| | Articles Poly(ADP-ribose) polymerase (PARP-1) has a controlling role in homologous recombination Niklas Schultz, Elena Lopez, Nasrollah Saleh-Gohari, and Thomas Helleday Nucleic Acids Res. 2003 September 1; 31(17): 4959–4964. doi: 10.1093/nar/gkg703.PMCID: PMC212803 Differences in replication of a DNA template containing an ethyl phosphotriester by T4 DNA polymerase and Escherichia coli DNA polymerase I Laura Tsujikawa, Michael Weinfield, and Linda J. Reha-Krantz Nucleic Acids Res. 2003 September 1; 31(17): 4965–4972. doi: 10.1093/nar/gkg722.PMCID: PMC212818 Developmental defects by antisense-mediated inactivation of micro-RNAs 2 and 13 in Drosophila and the identification of putative target genes Alexandra Boutla, Christos Delidakis, and Martin Tabler Nucleic Acids Res. 2003 September 1; 31(17): 4973–4980. doi: 10.1093/nar/gkg707.PMCID: PMC212806 Ribozyme-mediated REV1 inhibition reduces the frequency of UV-induced mutations in the human HPRT gene Denise R. Clark, Wolfgang Zacharias, Luminita Panaitescu, and W. Glenn McGregor Nucleic Acids Res. 2003 September 1; 31(17): 4981–4988. doi: 10.1093/nar/gkg725.PMCID: PMC212819 Thermodynamic criteria for high hit rate antisense oligonucleotide design O. V. Matveeva, D. H. Mathews, A. D. Tsodikov, S. A. Shabalina, R. F. Gesteland, J. F. Atkins, and S. M. Freier Nucleic Acids Res. 2003 September 1; 31(17): 4989–4994. doi: 10.1093/nar/gkg710.PMCID: PMC212809 Functional conservation of Dhh1p, a cytoplasmic DExD/H-box protein present in large complexes Stephanie S.-I Tseng-Rogenski, Jean-Leon Chong, Christopher B. Thomas, Shinichiro Enomoto, Judith Berman, and Tien-Hsien Chang Nucleic Acids Res. 2003 September 1; 31(17): 4995–5002. doi: 10.1093/nar/gkg712.PMCID: PMC212811 Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean Geneviève Girard, Andreas Roussis, Alexander P. Gultyaev, Cornelis W. A. Pleij, and Herman P. Spaink Nucleic Acids Res. 2003 September 1; 31(17): 5003–5015. doi: 10.1093/nar/gkg721.PMCID: PMC212817 Elongation by RNA polymerase II on chromatin templates requires topoisomerase activity Neelima Mondal, Ye Zhang, Zophonias Jonsson, Suman Kumar Dhar, Madhu Kannapiran, and Jeffrey D. Parvin Nucleic Acids Res. 2003 September 1; 31(17): 5016–5024. doi: 10.1093/nar/gkg705.PMCID: PMC212805 Construction and analysis of cells lacking the HMGA gene family Brett Beitzel and Frederic Bushman Nucleic Acids Res. 2003 September 1; 31(17): 5025–5032. doi: 10.1093/nar/gkg684.PMCID: PMC212792 Promoter choice affects the potency of HIV-1 specific RNA interference Daniel Boden, Oliver Pusch, Fredrick Lee, Lynne Tucker, Peter R. Shank, and Bharat Ramratnam Nucleic Acids Res. 2003 September 1; 31(17): 5033–5038. doi: 10.1093/nar/gkg704.PMCID: PMC212804 Import of mitochondrial transcription factor A (TFAM) into rat liver mitochondria stimulates transcription of mitochondrial DNA Heike L. Garstka, Wolfgang E. Schmitt, Jeanette Schultz, Bettina Sogl, Barbara Silakowski, Acisclo Pérez-Martos, Julio Montoya, and Rudolf J. Wiesner Nucleic Acids Res. 2003 September 1; 31(17): 5039–5047. doi: 10.1093/nar/gkg717.PMCID: PMC212813 Enzymatic repair of an expanded genetic information system Michael J. Moser and James R. Prudent Nucleic Acids Res. 2003 September 1; 31(17): 5048–5053. doi: 10.1093/nar/gkg709.PMCID: PMC212808 Fission yeast Rhp51 is required for the maintenance of telomere structure in the absence of the Ku heterodimer Tatsuya Kibe, Kazunori Tomita, Akira Matsuura, Daisuke Izawa, Tsutomu Kodaira, Takashi Ushimaru, Masahiro Uritani, and Masaru Ueno Nucleic Acids Res. 2003 September 1; 31(17): 5054–5063. doi: 10.1093/nar/gkg718.PMCID: PMC212814 Nuclear factories for signalling and repairing DNA double strand breaks in living fission yeast Peter Meister, Mickaël Poidevin, Stefania Francesconi, Isabelle Tratner, Patrick Zarzov, and Giuseppe Baldacci Nucleic Acids Res. 2003 September 1; 31(17): 5064–5073. doi: 10.1093/nar/gkg719.PMCID: PMC212815 Effect of polyamines on the inhibition of peptidyltransferase by antibiotics: revisiting the mechanism of chloramphenicol action Maria A. Xaplanteri, Athanasios Andreou, George P. Dinos, and Dimitrios L. Kalpaxis Nucleic Acids Res. 2003 September 1; 31(17): 5074–5083. doi: 10.1093/nar/gkg686.PMCID: PMC212793 Determination of DNA minor groove width in distamycin-DNA complexes by solid-state NMR Greg L. Olsen, Elizabeth A. Louie, Gary P. Drobny, and Snorri Th. Sigurdsson Nucleic Acids Res. 2003 September 1; 31(17): 5084–5089. doi: 10.1093/nar/gkg720.PMCID: PMC212816 Analysis of the DNA joining repertoire of Chlorella virus DNA ligase and a new crystal structure of the ligase–adenylate intermediate Mark Odell, Lucy Malinina, Verl Sriskanda, Marianna Teplova, and Stewart Shuman Nucleic Acids Res. 2003 September 1; 31(17): 5090–5100. doi: 10.1093/nar/gkg665.PMCID: PMC212790 Mg2+-induced triplex formation of an equimolar mixture of poly(rA) and poly(rU) Besik I. Kankia Nucleic Acids Res. 2003 September 1; 31(17): 5101–5107. doi: 10.1093/nar/gkg698.PMCID: PMC212798 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures Xiang-Jun Lu and Wilma K. Olson Nucleic Acids Res. 2003 September 1; 31(17): 5108–5121. doi: 10.1093/nar/gkg680.PMCID: PMC212791 Novel chimeric immunomodulatory compounds containing short CpG oligodeoxyribonucleotides have differential activities in human cells Jason D. Marshall, Edith M. Hessel, Josh Gregorio, Christina Abbate, Priscilla Yee, Mabel Chu, Gary Van Nest, Robert L. Coffman, and Karen L. Fearon Nucleic Acids Res. 2003 September 1; 31(17): 5122–5133. doi: 10.1093/nar/gkg700.PMCID: PMC212800 Solution measurement of DNA curvature in papillomavirus E2 binding sites Jeff M. Zimmerman and L. James Maher, III Nucleic Acids Res. 2003 September 1; 31(17): 5134–5139. doi: 10.1093/nar/gkg697.PMCID: PMC212797 Activation of site-specific DNA integration in human cells by a single chain integration host factor Teresa Corona, Qiuye Bao, Nicole Christ, Thomas Schwartz, Jinming Li, and Peter Dröge Nucleic Acids Res. 2003 September 1; 31(17): 5140–5148. doi: 10.1093/nar/gkg711.PMCID: PMC212810 Clerocidin alkylates DNA through its epoxide function: evidence for a fine tuned mechanism of action Sara Richter, Barbara Gatto, Daniele Fabris, Ken-ichi Takao, Susumu Kobayashi, and Manlio Palumbo Nucleic Acids Res. 2003 September 1; 31(17): 5149–5156. doi: 10.1093/nar/gkg696.PMCID: PMC212796 Simultaneous gene expression analysis of steady-state and actively translated mRNA populations from osteosarcoma MG-63 cells in response to IL-1α via an open expression analysis platform Jingfang Ju, Chunli Huang, Stacey A. Minskoff, Jane E. Mayotte, Bruce E. Taillon, and Jan F. Simons Nucleic Acids Res. 2003 September 1; 31(17): 5157–5166. doi: 10.1093/nar/gkg702.PMCID: PMC212802 A positively charged side chain at position 154 on the β8–αE loop of HIV-1 RT is required for stable ternary complex formation Bechan Sharma, Neerja Kaushik, Alok Upadhyay, Snehlata Tripathi, Kamalendra Singh, and Virendra N. Pandey Nucleic Acids Res. 2003 September 1; 31(17): 5167–5174. doi: 10.1093/nar/gkg708.PMCID: PMC212807 MFP1 is a thylakoid-associated, nucleoid-binding protein with a coiled-coil structure Sun Yong Jeong, Annkatrin Rose, and Iris Meier Nucleic Acids Res. 2003 September 1; 31(17): 5175–5185. doi: 10.1093/nar/gkg693.PMCID: PMC212795 On the importance of the primer activation signal for initiation of tRNAlys3-primed reverse transcription of the HIV-1 RNA genome Hendrik Huthoff, Katarzyna Bugala, Jan Barciszewski, and Ben Berkhout Nucleic Acids Res. 2003 September 1; 31(17): 5186–5194. doi: 10.1093/nar/gkg714.PMCID: PMC212812 Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes Yoshihito Niimura, Mahito Terabe, Takashi Gojobori, and Kin-ichiro Miura Nucleic Acids Res. 2003 September 1; 31(17): 5195–5201. doi: 10.1093/nar/gkg701.PMCID: PMC212801 Phosphorylation of the PCNA binding domain of the large subunit of replication factor C on Thr506 by cyclin-dependent kinases regulates binding to PCNA Isabelle Salles-Passador, Anil Munshi, Dominique Cannella, Vincent Pennaneach, Stephane Koundrioukoff, Michel Jacquinod, Eric Forest, Vladimir Podust, Arun Fotedar, and Rati Fotedar Nucleic Acids Res. 2003 September 1; 31(17): 5202–5211. doi: 10.1093/nar/gkg692.PMCID: PMC212794 Isochores and tissue-specificity Alexander E. Vinogradov Nucleic Acids Res. 2003 September 1; 31(17): 5212–5220. doi: 10.1093/nar/gkg699.PMCID: PMC212799 NAR Methods Online An enhanced U6 promoter for synthesis of short hairpin RNA Xu Gang Xia, Hongxia Zhou, Hongliu Ding, El Bashir Affar, Yang Shi, and Zuoshang Xu Nucleic Acids Res. 2003 September 1; 31(17): e100. doi: 10.1093/nar/gng098.PMCID: PMC212820 Improved generation of recombinant baculovirus genomes in Escherichia coli Kari J. Airenne, Erik Peltomaa, Vesa P. Hytönen, Olli H. Laitinen, and Seppo Ylä-Herttuala Nucleic Acids Res. 2003 September 1; 31(17): e101. doi: 10.1093/nar/gng102.PMCID: PMC212821 mRNA fusion constructs serve in a general cell-based assay to profile oligonucleotide activity Dieter Hüsken, Fred Asselbergs, Bernd Kinzel, Francois Natt, Jan Weiler, Pierre Martin, Robert Häner, and Jonathan Hall Nucleic Acids Res. 2003 September 1; 31(17): e102. doi: 10.1093/nar/gng103.PMCID: PMC212822 Parallel gene analysis with allele-specific padlock probes and tag microarrays Johan Banér, Anders Isaksson, Erik Waldenström, Jonas Jarvius, Ulf Landegren, and Mats Nilsson Nucleic Acids Res. 2003 September 1; 31(17): e103. doi: 10.1093/nar/gng104.PMCID: PMC212823 Quantitation of intracellular NAD(P)H can monitor an imbalance of DNA single strand break repair in base excision repair deficient cells in real time Jun Nakamura, Shoji Asakura, Susan D. Hester, Gilbert de Murcia, Keith W. Caldecott, and James A. Swenberg Nucleic Acids Res. 2003 September 1; 31(17): e104. doi: 10.1093/nar/gng105.PMCID: PMC212824 Kinetic Outlier Detection (KOD) in real-time PCR Tzachi Bar, Anders Ståhlberg, Anders Muszta, and Mikael Kubista Nucleic Acids Res. 2003 September 1; 31(17): e105. doi: 10.1093/nar/gng106.PMCID: PMC212825 MGView: an alignment and visualization tool to enhance gap closure of microbial genomes Lisa Herron-Olson, John Freeman, Qing Zhang, Ernest F. Retzel, and Vivek Kapur Nucleic Acids Res. 2003 September 1; 31(17): e106. doi: 10.1093/nar/gng107.PMCID: PMC212826 |