| | Articles Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells Frank Czauderna, Melanie Fechtner, Sibylle Dames, Hüseyin Aygün, Anke Klippel, Gijsbertus J. Pronk, Klaus Giese, and Jörg Kaufmann PMCID: PMC156727 Insight into the mechanism of the peptide-based gene delivery system MPG: implications for delivery of siRNA into mammalian cells Federica Simeoni, May C. Morris, Frederic Heitz, and Gilles Divita PMCID: PMC156720 Syntheses and structural studies of calix[4]arene–nucleoside and calix[4]arene–oligonucleotide hybrids Su Jeong Kim and Byeang Hyean Kim PMCID: PMC156725 Transcriptional regulation of the human MIP-1α promoter by RUNX1 and MOZ Claire A. P. Bristow and Paul Shore PMCID: PMC156734 Effect of DNA bases and backbone on σ70 holoenzyme binding and isomerization using fork junction probes Mike S. Fenton and Jay D. Gralla PMCID: PMC156733 The phage T4 restriction endoribonuclease RegB: a cyclizing enzyme that requires two histidines to be fully active Fakhri Saïda, Marc Uzan, and François Bontems PMCID: PMC156712 Steric inhibition of human immunodeficiency virus type-1 Tat-dependent trans-activation in vitro and in cells by oligonucleotides containing 2′-O-methyl G-clamp ribonucleoside analogues Stephen C. Holmes, Andrey A. Arzumanov, and Michael J. Gait PMCID: PMC156719 Overexpression of FABP7 in Down syndrome fetal brains is associated with PKNOX1 gene-dosage imbalance Ma Francisca Sánchez-Font, Anna Bosch-Comas, Roser Gonzàlez-Duarte, and Gemma Marfany PMCID: PMC156729 Domain mapping of Escherichia coli RecQ defines the roles of conserved N- and C-terminal regions in the RecQ family Douglas A. Bernstein and James L. Keck PMCID: PMC156711 UVA-induced cyclobutane pyrimidine dimers form predominantly at thymine–thymine dipyrimidines and correlate with the mutation spectrum in rodent cells Patrick J. Rochette, Jean-Philippe Therrien, Régen Drouin, Daniel Perdiz, Nathalie Bastien, Elliot A. Drobetsky, and Evelyne Sage PMCID: PMC156735 Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice Colin G. Miles, Lesley Rankin, Shirley I. Smith, Martina Niksic, Greg Elgar, and Nicholas D. Hastie PMCID: PMC156718 Purification and characterisation of a novel DNA methyltransferase, M.AhdI Phil Marks, John McGeehan, Geoff Wilson, Neil Errington, and Geoff Kneale PMCID: PMC156732 Using structural motif templates to identify proteins with DNA binding function Susan Jones, Jonathan A. Barker, Irene Nobeli, and Janet M. Thornton PMCID: PMC156721 Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase Chin-Ju Park, Sung-Hun Bae, Mi-Kyung Lee, Gabriele Varani, and Byong-Seok Choi PMCID: PMC156722 SPINE 2: a system for collaborative structural proteomics within a federated database framework Chern-Sing Goh, Ning Lan, Nathaniel Echols, Shawn M. Douglas, Duncan Milburn, Paul Bertone, Rong Xiao, Li-Chung Ma, Deyou Zheng, Zeba Wunderlich, Tom Acton, Gaetano T. Montelione, and Mark Gerstein PMCID: PMC156730 Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS Horst Wolff, Ruth Brack-Werner, Markus Neumann, Thomas Werner, and Ralf Schneider PMCID: PMC156724 The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity Janet Klass, Frank V. Murphy, IV, Susan Fouts, Melissa Serenil, Anita Changela, Jessica Siple, and Mair E. A. Churchill PMCID: PMC156723 Tertiary structure base pairs between D- and TψC-loops of Escherichia coli tRNALeu play important roles in both aminoacylation and editing Xing Du and En-Duo Wang PMCID: PMC156717 The Drosophila Corto protein interacts with Polycomb-group proteins and the GAGA factor Juliette Salvaing, Aurore Lopez, Antoine Boivin, Jean S. Deutsch, and Frédérique Peronnet PMCID: PMC156716 Optimisation of the 10–23 DNAzyme–substrate pairing interactions enhanced RNA cleavage activity at purine–cytosine target sites Murray J. Cairns, Andrew King, and Lun-Quan Sun PMCID: PMC156713 Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4 Jörg Vogel, Ilka M. Axmann, Hanspeter Herzel, and Wolfgang R. Hess PMCID: PMC156731 ZBP-89 represses vimentin gene transcription by interacting with the transcriptional activator, Sp1 Xueping Zhang, Iman H. Diab, and Zendra E. Zehner PMCID: PMC156715 A new member of the MCM protein family encoded by the human MCM8 gene, located contrapodal to GCD10 at chromosome band 20p12.3–13 Edward M. Johnson, Yayoi Kinoshita, and Dianne C. Daniel PMCID: PMC156728 Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design Hin Hark Gan, Samuela Pasquali, and Tamar Schlick PMCID: PMC156709 Specific interactions of distamycin with G-quadruplex DNA Melanie J. Cocco, L. A. Hanakahi, Michael D. Huber, and Nancy Maizels PMCID: PMC156726 A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells Jean-Charles Epinat, Sylvain Arnould, Patrick Chames, Pascal Rochaix, Dominique Desfontaines, Clémence Puzin, Amélie Patin, Alexandre Zanghellini, Frédéric Pâques, and Emmanuel Lacroix PMCID: PMC156710 Efficient clustering of large EST data sets on parallel computers Anantharaman Kalyanaraman, Srinivas Aluru, Suresh Kothari, and Volker Brendel PMCID: PMC156714 NAR Methods Online A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein R. Arjen Kramer, Freek Cox, Marieke van der Horst, Sonja van den Oudenrijn, Pieter C. M. Res, Judith Bia, Ton Logtenberg, and John de Kruif PMCID: PMC156736 Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility Martin J. Hessner, Xujing Wang, Shehnaz Khan, Lisa Meyer, Michael Schlicht, Jennifer Tackes, Milton W. Datta, Howard J. Jacob, and Soumitra Ghosh PMCID: PMC156737 Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age Francis J. Miller, Franklin L. Rosenfeldt, Chunfang Zhang, Anthony W. Linnane, and Phillip Nagley PMCID: PMC156738 A novel multiplex quantitative DNA array based PCR (MQDA-PCR) for quantification of transgenic maize in food and feed Knut Rudi, Ida Rud, and Askild Holck PMCID: PMC156739 MALDI mass spectrometry analysis of single nucleotide polymorphisms by photocleavage and charge-tagging Sascha Sauer, Hans Lehrach, and Richard Reinhardt PMCID: PMC156740 In vitro analysis of nuclear mRNA export using molecular beacons for target detection Ralph H. Kehlenbach PMCID: PMC156741 An automated microplate-based method for monitoring DNA strand breaks in plasmids and bacterial artificial chromosomes Cassandra Rock, Parviz Ayazi Shamlou, and M. Susana Levy PMCID: PMC156742 Genotyping single nucleotide polymorphisms directly from genomic DNA by invasive cleavage reaction on microspheres Kakuturu V. N. Rao, Priscilla Wilkins Stevens, Jeff G. Hall, Victor Lyamichev, Bruce P. Neri, and David M. Kelso PMCID: PMC156743 |
