| | Survey and Summary Exon–intron organization of genes in the slime mold Physarum polycephalum Joanna Trzcinska-Danielewicz and Jan Fronk Nucleic Acids Res. 2000 September 15; 28(18): 3411–3416. PMCID: PMC110748 Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories L. Aravind, Kira S. Makarova, and Eugene V. Koonin Nucleic Acids Res. 2000 September 15; 28(18): 3417–3432. PMCID: PMC110722 Articles Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter Magali Roux-Rouquie and Monique Marilley Nucleic Acids Res. 2000 September 15; 28(18): 3433–3441. PMCID: PMC110736 STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene B. Snel, G. Lehmann, P. Bork, and M. A. Huynen Nucleic Acids Res. 2000 September 15; 28(18): 3442–3444. PMCID: PMC110752 The human tRNA(m22G26)dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene Jianming Liu and Kerstin B. Stråby Nucleic Acids Res. 2000 September 15; 28(18): 3445–3451. PMCID: PMC110725 The 28S–18S rDNA intergenic spacer from Crithidia fasciculata: repeated sequences, length heterogeneity, putative processing sites and potential interactions between U3 small nucleolar RNA and the ribosomal RNA precursor Murray N. Schnare, James C. Collings, David F. Spencer, and Michael W. Gray Nucleic Acids Res. 2000 September 15; 28(18): 3452–3461. PMCID: PMC110749 Interaction of the U3-55k protein with U3 snoRNA is mediated by the Box B/C motif of U3 and the WD repeats of U3-55k Andrew A. Lukowiak, Sander Granneman, Sharon A. Mattox, Wayne A. Speckmann, Kevin Jones, Helma Pluk, Walther J. van Venrooij, Rebecca M. Terns, and Michael P. Terns Nucleic Acids Res. 2000 September 15; 28(18): 3462–3471. PMCID: PMC110750 Structure and dynamics of three-way DNA junctions: atomic force microscopy studies Luda S. Shlyakhtenko, Vladimir N. Potaman, Richard R. Sinden, Alexander A. Gall, and Yuri L. Lyubchenko Nucleic Acids Res. 2000 September 15; 28(18): 3472–3477. PMCID: PMC110733 RBT1, a novel transcriptional co-activator, binds the second subunit of Replication Protein A John M. Cho, Daniel J. Song, Josee Bergeron, Naciba Benlimame, Marc S. Wold, and Moulay A. Alaoui-Jamali Nucleic Acids Res. 2000 September 15; 28(18): 3478–3485. PMCID: PMC110737 Web-based visualization tools for bacterial genome alignments Liliana Florea, Cathy Riemer, Scott Schwartz, Zheng Zhang, Nikola Stojanovic, Webb Miller, and Michael McClelland Nucleic Acids Res. 2000 September 15; 28(18): 3486–3496. PMCID: PMC110741 Competition among seven Escherichia coli σ subunits: relative binding affinities to the core RNA polymerase Hiroto Maeda, Nobuyuki Fujita, and Akira Ishihama Nucleic Acids Res. 2000 September 15; 28(18): 3497–3503. PMCID: PMC110723 H-NS mediated compaction of DNA visualised by atomic force microscopy Remus Thei Dame, Claire Wyman, and Nora Goosen Nucleic Acids Res. 2000 September 15; 28(18): 3504–3510. PMCID: PMC110753 Parallel intramolecular DNA triple helix with G and T bases in the third strand stabilized by Zn2+ ions E. B. Khomyakova, H. Gousset, J. Liquier, T. Huynh-Dinh, C. Gouyette, M. Takahashi, V. L. Florentiev, and E. Taillandier Nucleic Acids Res. 2000 September 15; 28(18): 3511–3516. PMCID: PMC110744 Gradients in nucleotide and codon usage along Escherichia coli genes Sean D. Hooper and Otto G. Berg Nucleic Acids Res. 2000 September 15; 28(18): 3517–3523. PMCID: PMC110745 Complete deletion of yeast chromosomal rDNA repeats and integration of a new rDNA repeat: use of rDNA deletion strains for functional analysis of rDNA promoter elements in vivo Hobert H. Wai, Loan Vu, Melanie Oakes, and Masayasu Nomura Nucleic Acids Res. 2000 September 15; 28(18): 3524–3534. PMCID: PMC110729 Covalent attachment of oligodeoxyribonucleotides to amine-modified Si (001) surfaces Todd Strother, Robert J. Hamers, and Lloyd M. Smith Nucleic Acids Res. 2000 September 15; 28(18): 3535–3541. PMCID: PMC110746 Transcriptional activation by the PHD finger is inhibited through an adjacent leucine zipper that binds 14-3-3 proteins Thorsten Halbach, Nico Scheer, and Wolfgang Werr Nucleic Acids Res. 2000 September 15; 28(18): 3542–3550. PMCID: PMC110726 Prod is a novel DNA-binding protein that binds to the 1.686 g/cm3 10 bp satellite repeat of Drosophila melanogaster Tibor Török, Mátyás Gorjánácz, Peter J. Bryant, and István Kiss Nucleic Acids Res. 2000 September 15; 28(18): 3551–3557. PMCID: PMC110743 The DNA ligase III zinc finger stimulates binding to DNA secondary structure and promotes end joining Richard M. Taylor, Claire J. Whitehouse, and Keith W. Caldecott Nucleic Acids Res. 2000 September 15; 28(18): 3558–3563. PMCID: PMC110727 Requirement for Phe36 for DNA binding and mismatch repair by Escherichia coli MutS protein Akira Yamamoto, Mark J. Schofield, Indranil Biswas, and Peggy Hsieh Nucleic Acids Res. 2000 September 15; 28(18): 3564–3569. PMCID: PMC110738 PSI-BLAST searches using hidden Markov models of structural repeats: prediction of an unusual sliding DNA clamp and of β-propellers in UV-damaged DNA-binding protein Andrew F. Neuwald and Aleksandar Poleksic Nucleic Acids Res. 2000 September 15; 28(18): 3570–3580. PMCID: PMC110734 MDM2 interacts with the C-terminus of the catalytic subunit of DNA polymerase Nikolina Vlatkovic, Stephanie Guerrera, Ying Li, Stuart Linn, Dale S. Haines, and Mark T. Boyd Nucleic Acids Res. 2000 September 15; 28(18): 3581–3586. PMCID: PMC110721 Role of FXR and FTF in bile acid-mediated suppression of cholesterol 7α-hydroxylase transcription Antonio del Castillo-Olivares and Gregorio Gil Nucleic Acids Res. 2000 September 15; 28(18): 3587–3593. PMCID: PMC110735 Examination of the DNA substrate selectivity of DNA cytosine methyltransferases using mass tagging Valaiporn Rusmintratip, Arthur D. Riggs, and Lawrence C. Sowers Nucleic Acids Res. 2000 September 15; 28(18): 3594–3599. PMCID: PMC110732 A functional assay in Escherichia coli to detect non-assisted interaction between galactose repressor dimers N. Perez, M. Rehault, and M. Amouyal Nucleic Acids Res. 2000 September 15; 28(18): 3600–3604. PMCID: PMC110724 Stable expression and cell-specific chromatin structure of human α1-antitrypsin cosmid transgenes in rat hepatoma cells Pierre Rollini, Lianjun Xu, and R. E. K. Fournier Nucleic Acids Res. 2000 September 15; 28(18): 3605–3614. PMCID: PMC110740 Decoding of tandem quadruplets by adjacent tRNAs with eight-base anticodon loops Barry Moore, Chad C. Nelson, Britt C. Persson, Raymond F. Gesteland, and John F. Atkins Nucleic Acids Res. 2000 September 15; 28(18): 3615–3624. PMCID: PMC110719 2′-Deoxy-2′-fluoro-β-d-arabinonucleosides and oligonucleotides (2′F-ANA): synthesis and physicochemical studies Christopher J. Wilds and Masad J. Damha Nucleic Acids Res. 2000 September 15; 28(18): 3625–3635. PMCID: PMC110742 Anchoring of rice BAC clones to the rice genetic map in silico Qiaoping Yuan, Feng Liang, Joseph Hsiao, Victoria Zismann, Maria-Ines Benito, John Quackenbush, Rod Wing, and Robin Buell Nucleic Acids Res. 2000 September 15; 28(18): 3636–3641. PMCID: PMC110739 Telomere repeat DNA forms a large non-covalent complex with unique cohesive properties which is dissociated by Werner syndrome DNA helicase in the presence of replication protein A Itaru Ohsugi, Yoshiki Tokutake, Noriyuki Suzuki, Toshinori Ide, Masanobu Sugimoto, and Yasuhiro Furuichi Nucleic Acids Res. 2000 September 15; 28(18): 3642–3648. PMCID: PMC110730 Mutational spectrum analysis of RNase H(35) deficient Saccharomyces cerevisiae using fluorescence-based directed termination PCR Junjian Z. Chen, Junzhuan Qiu, Binghui Shen, and Gerald P. Holmquist Nucleic Acids Res. 2000 September 15; 28(18): 3649–3656. PMCID: PMC110751 An optimized protocol for analysis of EST sequences Feng Liang, Ingeborg Holt, Geo Pertea, Svetlana Karamycheva, Steven L. Salzberg, and John Quackenbush Nucleic Acids Res. 2000 September 15; 28(18): 3657–3665. PMCID: PMC110731 Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants Jong-Wook Kim, Hyung-Cheol Kim, Gyoung-Mi Kim, Jun-Mo Yang, Jef D. Boeke, and Kiebang Nam Nucleic Acids Res. 2000 September 15; 28(18): 3666–3673. PMCID: PMC110720 Eukaryotic ribonucleases HI and HII generate characteristic hydrolytic patterns on DNA–RNA hybrids: further evidence that mitochondrial RNase H is an RNase HII Frédéric Pileur, Jean-Jacques Toulme, and Christian Cazenave Nucleic Acids Res. 2000 September 15; 28(18): 3674–3683. PMCID: PMC110728 Two novel human and mouse DNA polymerases of the polX family Said Aoufouchi, Eric Flatter, Auriel Dahan, Ahmad Faili, Barbara Bertocci, Sebastien Storck, Frédéric Delbos, Laurentiu Cocea, Neetu Gupta, Jean-Claude Weill, and Claude-Agnès Reynaud Nucleic Acids Res. 2000 September 15; 28(18): 3684–3693. PMCID: PMC110747 NAR Methods Online Analysis of short tandem repeat polymorphisms by electrospray ion trap mass spectrometry S. Hahner, A. Schneider, A. Ingendoh, and J. Mosner Nucleic Acids Res. 2000 September 15; 28(18): e82. PMCID: PMC110754 Psoralen photo-crosslinked mRNA–puromycin conjugates: a novel template for the rapid and facile preparation of mRNA–protein fusions Markus Kurz, Ke Gu, and Peter A. Lohse Nucleic Acids Res. 2000 September 15; 28(18): e83. PMCID: PMC110755 Engineering EGFP reporter constructs into a 200 kb human β-globin BAC clone using GET Recombination Michael Orford, Mikhail Nefedov, Jim Vadolas, Faten Zaibak, Robert Williamson, and Panayiotis A. Ioannou Nucleic Acids Res. 2000 September 15; 28(18): e84. PMCID: PMC110756 |