| | Articles The Molecular Biology Database Collection: an online compilation of relevant database resources Andreas D. Baxevanis Nucleic Acids Res. 2000 January 1; 28(1): 1–7. PMCID: PMC102497 DBcat: a catalog of 500 biological databases Claude Discala, Xavier Benigni, Emmanuel Barillot, and Guy Vaysseix Nucleic Acids Res. 2000 January 1; 28(1): 8–9. PMCID: PMC102454 Database resources of the National Center for Biotechnology Information David L. Wheeler, Colombe Chappey, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Gregory D. Schuler, Tatiana A. Tatusova, and Barbara A. Rapp Nucleic Acids Res. 2000 January 1; 28(1): 10–14. PMCID: PMC102437 GenBank Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Barbara A. Rapp, and David L. Wheeler Nucleic Acids Res. 2000 January 1; 28(1): 15–18. PMCID: PMC102453 The EMBL Nucleotide Sequence Database Wendy Baker, Alexandra van den Broek, Evelyn Camon, Pascal Hingamp, Peter Sterk, Guenter Stoesser, and Mary Ann Tuli Nucleic Acids Res. 2000 January 1; 28(1): 19–23. PMCID: PMC102461 DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, and Takashi Gojobori Nucleic Acids Res. 2000 January 1; 28(1): 24–26. PMCID: PMC102400 KEGG: Kyoto Encyclopedia of Genes and Genomes Minoru Kanehisa and Susumu Goto Nucleic Acids Res. 2000 January 1; 28(1): 27–30. PMCID: PMC102409 The Genome Sequence DataBase C. Harger, G. Chen, A. Farmer, W. Huang, J. Inman, D. Kiphart, F. Schilkey, M. P. Skupski, and J. Weller Nucleic Acids Res. 2000 January 1; 28(1): 31–32. PMCID: PMC102463 The COG database: a tool for genome-scale analysis of protein functions and evolution Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, and Eugene V. Koonin Nucleic Acids Res. 2000 January 1; 28(1): 33–36. PMCID: PMC102395 MIPS: a database for genomes and protein sequences H. W. Mewes, D. Frishman, C. Gruber, B. Geier, D. Haase, A. Kaps, K. Lemcke, G. Mannhaupt, F. Pfeiffer, C. Schüller, S. Stocker, and B. Weil Nucleic Acids Res. 2000 January 1; 28(1): 37–40. PMCID: PMC102494 The Protein Information Resource (PIR) Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, and Cathy Wu Nucleic Acids Res. 2000 January 1; 28(1): 41–44. PMCID: PMC102418 The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 Amos Bairoch and Rolf Apweiler Nucleic Acids Res. 2000 January 1; 28(1): 45–48. PMCID: PMC102476 ProtoMap: automatic classification of protein sequences and hierarchy of protein families Golan Yona, Nathan Linial, and Michal Linial Nucleic Acids Res. 2000 January 1; 28(1): 49–55. PMCID: PMC102438 The EcoCyc and MetaCyc databases Peter D. Karp, Monica Riley, Milton Saier, Ian T. Paulsen, Suzanne M. Paley, and Alida Pellegrini-Toole Nucleic Acids Res. 2000 January 1; 28(1): 56–59. PMCID: PMC102475 EcoGene: a genome sequence database for Escherichia coli K-12 Kenneth E. Rudd Nucleic Acids Res. 2000 January 1; 28(1): 60–64. PMCID: PMC102481 RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12 Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Frederick R. Blattner, and Julio Collado-Vides Nucleic Acids Res. 2000 January 1; 28(1): 65–67. PMCID: PMC102478 EMGLib: the Enhanced Microbial Genomes Library (update 2000) Guy Perrière, Philippe Bessières, and Bernard Labedan Nucleic Acids Res. 2000 January 1; 28(1): 68–71. PMCID: PMC102414 CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000 Yasukazu Nakamura, Takakazu Kaneko, and Satoshi Tabata Nucleic Acids Res. 2000 January 1; 28(1): 72. PMCID: PMC102459 The Yeast Proteome Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information Maria C. Costanzo, Jennifer D. Hogan, Michael E. Cusick, Brian P. Davis, Ann M. Fancher, Peter E. Hodges, Pinar Kondu, Carey Lengieza, Jodi E. Lew-Smith, Carol Lingner, Kevin J. Roberg-Perez, Michael Tillberg, Joan E. Brooks, and James I. Garrels Nucleic Acids Res. 2000 January 1; 28(1): 73–76. PMCID: PMC102421 Integrating functional genomic information into the Saccharomyces Genome Database Catherine A. Ball, Kara Dolinski, Selina S. Dwight, Midori A. Harris, Laurie Issel-Tarver, Andrew Kasarskis, Charles R. Scafe, Gavin Sherlock, Gail Binkley, Heng Jin, Mira Kaloper, Sidney D. Orr, Mark Schroeder, Shuai Weng, Yan Zhu, David Botstein, and J. Michael Cherry Nucleic Acids Res. 2000 January 1; 28(1): 77–80. PMCID: PMC102447 TRIPLES: a database of gene function in Saccharomyces cerevisiae Anuj Kumar, Kei-Hoi Cheung, Petra Ross-Macdonald, Paulo S. R. Coelho, Perry Miller, and Michael Snyder Nucleic Acids Res. 2000 January 1; 28(1): 81–84. PMCID: PMC102388 YIDB: the Yeast Intron DataBase Pascal J. Lopez and Bertrand Séraphin Nucleic Acids Res. 2000 January 1; 28(1): 85–86. PMCID: PMC102386 The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research Mark Waugh, Peter Hraber, Jennifer Weller, Yihe Wu, Guonghong Chen, Jeff Inman, Don Kiphart, and Bruno Sobral Nucleic Acids Res. 2000 January 1; 28(1): 87–90. PMCID: PMC102488 The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans W. James Kent and Alan M. Zahler Nucleic Acids Res. 2000 January 1; 28(1): 91–93. PMCID: PMC102389 Gene discovery using the maize genome database ZmDB Xiaowu Gai, Shailesh Lal, Liqun Xing, Volker Brendel, and Virginia Walbot Nucleic Acids Res. 2000 January 1; 28(1): 94–96. PMCID: PMC102455 INE: a rice genome database with an integrated map view Katsumi Sakata, Baltazar A. Antonio, Yoshiyuki Mukai, Hideki Nagasaki, Yasumichi Sakai, Kazuyoshi Makino, and Takuji Sasaki Nucleic Acids Res. 2000 January 1; 28(1): 97–101. PMCID: PMC102484 DAtA: Database of Arabidopsis thaliana Annotation Curtis J. Palm, Nancy A. Federspiel, and Ronald W. Davis Nucleic Acids Res. 2000 January 1; 28(1): 102–103. PMCID: PMC102487 UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics Jo Dicks, Mary Anderson, Linda Cardle, Sam Cartinhour, Matthew Couchman, Guy Davenport, Jeremy Dickson, Mike Gale, David Marshall, Sean May, Hamish McWilliam, Andrew O’Malia, Helen Ougham, Martin Trick, Sean Walsh, and Robbie Waugh Nucleic Acids Res. 2000 January 1; 28(1): 104–107. PMCID: PMC102397 The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse Judith A. Blake, Janan T. Eppig, Joel E. Richardson, Muriel T. Davisson, and the Mouse Genome Database Group Nucleic Acids Res. 2000 January 1; 28(1): 108–111. PMCID: PMC102449 Mouse Tumor Biology Database (MTB): enhancements and current status Carol J. Bult, Debra M. Krupke, John P. Sundberg, and Janan T. Eppig Nucleic Acids Res. 2000 January 1; 28(1): 112–114. PMCID: PMC102417 GXD: a Gene Expression Database for the laboratory mouse: current status and recent enhancements Martin Ringwald, Janan T. Eppig, James A. Kadin, Joel E. Richardson, and the Gene Expression Database Group Nucleic Acids Res. 2000 January 1; 28(1): 115–119. PMCID: PMC102464 XREFdb: cross-referencing the genetics and genes of mammals and model organisms R. Ploger, J. Zhang, D. Bassett, R. Reeves, P. Hieter, M. Boguski, and F. Spencer Nucleic Acids Res. 2000 January 1; 28(1): 120–122. PMCID: PMC102470 WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction Ross Overbeek, Niels Larsen, Gordon D. Pusch, Mark D’Souza, Evgeni Selkov Jr, Nikos Kyrpides, Michael Fonstein, Natalia Maltsev, and Evgeni Selkov Nucleic Acids Res. 2000 January 1; 28(1): 123–125. PMCID: PMC102471 NCBI’s LocusLink and RefSeq Donna R. Maglott, Kenneth S. Katz, Hugues Sicotte, and Kim D. Pruitt Nucleic Acids Res. 2000 January 1; 28(1): 126–128. PMCID: PMC102393 Human BAC Ends Shaying Zhao Nucleic Acids Res. 2000 January 1; 28(1): 129–132. PMCID: PMC102394 MAGEST: MAboya Gene Expression patterns and Sequence Tags Takeshi Kawashima, Shuichi Kawashima, Minoru Kanehisa, Hiroki Nishida, and Kazuhiro W. Makabe Nucleic Acids Res. 2000 January 1; 28(1): 133–135. PMCID: PMC102485 BodyMap: a human and mouse gene expression database Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita, and Kousaku Okubo Nucleic Acids Res. 2000 January 1; 28(1): 136–138. PMCID: PMC102396 Axeldb: a Xenopus laevis database focusing on gene expression Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, and Christof Niehrs Nucleic Acids Res. 2000 January 1; 28(1): 139–140. PMCID: PMC102398 The TIGR Gene Indices: reconstruction and representation of expressed gene sequences John Quackenbush, Feng Liang, Ingeborg Holt, Geo Pertea, and Jonathan Upton Nucleic Acids Res. 2000 January 1; 28(1): 141–145. PMCID: PMC102391 RHdb: the Radiation Hybrid database Patricia Rodriguez-Tomé and Philip Lijnzaad Nucleic Acids Res. 2000 January 1; 28(1): 146–147. PMCID: PMC102439 MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status M. Attimonelli, N. Altamura, R. Benne, A. Brennicke, J. M. Cooper, D. D’Elia, A. de Montalvo, B. de Pinto, M. De Robertis, P. Golik, V. Knoop, C. Lanave, J. Lazowska, F. Licciulli, B. S. Malladi, F. Memeo, M. Monnerot, R. Pasimeni, S. Pilbout, A. H. V. Schapira, P. Sloof, and C. Saccone Nucleic Acids Res. 2000 January 1; 28(1): 148–152. PMCID: PMC102423 Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences Cecilia Lanave, Sabino Liuni, Flavio Licciulli, and Marcella Attimonelli Nucleic Acids Res. 2000 January 1; 28(1): 153–154. PMCID: PMC102422 MITOP, the mitochondrial proteome database: 2000 update C. Scharfe, P. Zaccaria, K. Hoertnagel, M. Jaksch, T. Klopstock, M. Dembowski, R. Lill, H. Prokisch, K. D. Gerbitz, W. Neupert, H. W. Mewes, and T. Meitinger Nucleic Acids Res. 2000 January 1; 28(1): 155–158. PMCID: PMC102491 PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating Vito Volpetti, Raffaele Gallerani, Caterina De Benedetto, Sabino Liuni, Flavio Licciulli, and Luigi R. Ceci Nucleic Acids Res. 2000 January 1; 28(1): 159–162. PMCID: PMC102413 MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins Graziano Pesole, Carmela Gissi, Domenico Catalano, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marcella Attimonelli, and Cecilia Saccone Nucleic Acids Res. 2000 January 1; 28(1): 163–165. PMCID: PMC102385 5S ribosomal RNA database Y2K Maciej Szymanski, Miroslawa Z. Barciszewska, Jan Barciszewski, and Volker A. Erdmann Nucleic Acids Res. 2000 January 1; 28(1): 166–167. PMCID: PMC102473 The tmRNA Website Kelly P. Williams Nucleic Acids Res. 2000 January 1; 28(1): 168. PMCID: PMC102480 tmRDB (tmRNA database) Christian Zwieb and Jacek Wower Nucleic Acids Res. 2000 January 1; 28(1): 169–170. PMCID: PMC102404 SRPDB (Signal Recognition Particle Database) Christian Zwieb and Tore Samuelsson Nucleic Acids Res. 2000 January 1; 28(1): 171–172. PMCID: PMC102405 The RDP (Ribosomal Database Project) continues Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr, Paul R. Saxman, Jason M. Stredwick, George M. Garrity, Bing Li, Gary J. Olsen, Sakti Pramanik, Thomas M. Schmidt, and James M. Tiedje Nucleic Acids Res. 2000 January 1; 28(1): 173–174. PMCID: PMC102428 The European Small Subunit Ribosomal RNA database Yves Van de Peer, Peter De Rijk, Jan Wuyts, Tina Winkelmans, and Rupert De Wachter Nucleic Acids Res. 2000 January 1; 28(1): 175–176. PMCID: PMC102429 The European Large Subunit Ribosomal RNA database Peter De Rijk, Jan Wuyts, Yves Van de Peer, Tina Winkelmans, and Rupert De Wachter Nucleic Acids Res. 2000 January 1; 28(1): 177–178. PMCID: PMC102430 The database of the smallest known auto-replicable RNA species: viroids and viroid-like RNAs Martin Pelchat, Patrick Deschênes, and Jean-Pierre Perreault Nucleic Acids Res. 2000 January 1; 28(1): 179–180. PMCID: PMC102402 The IDB and IEDB: intron sequence and evolution databases Nicholas J. Schisler and Jeffrey D. Palmer Nucleic Acids Res. 2000 January 1; 28(1): 181–184. PMCID: PMC102469 EID: the Exon–Intron Database—an exhaustive database of protein-coding intron-containing genes Serge Saxonov, Iraj Daizadeh, Alexei Fedorov, and Walter Gilbert Nucleic Acids Res. 2000 January 1; 28(1): 185–190. PMCID: PMC102483 ExInt: an Exon/Intron database M. Sakharkar, M. Long, T. W. Tan, and S. J. de Souza Nucleic Acids Res. 2000 January 1; 28(1): 191–192. PMCID: PMC102468 UTRdb and UTRsite: specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs Graziano Pesole, Sabino Liuni, Giorgio Grillo, Flavio Licciulli, Alessandra Larizza, Wojciech Makalowski, and Cecilia Saccone Nucleic Acids Res. 2000 January 1; 28(1): 193–196. PMCID: PMC102415 Non-coding, mRNA-like RNAs database Y2K Volker A. Erdmann, Maciej Szymanski, Abraham Hochberg, Nathan de Groot, and Jan Barciszewski Nucleic Acids Res. 2000 January 1; 28(1): 197–200. PMCID: PMC102406 PseudoBase: a database with RNA pseudoknots F. H. D. van Batenburg, A. P. Gultyaev, C. W. A. Pleij, J. Ng, and J. Oliehoek Nucleic Acids Res. 2000 January 1; 28(1): 201–204. PMCID: PMC102383 SELEX_DB: an activated database on selected randomized DNA/RNA sequences addressed to genomic sequence annotation Julia V. Ponomarenko, Galina V. Orlova, Mikhail P. Ponomarenko, Sergey V. Lavryushev, Anatoly S. Frolov, Svetlana V. Zybova, and Nikolay A. Kolchanov Nucleic Acids Res. 2000 January 1; 28(1): 205–208. PMCID: PMC102392 The RESID Database of protein structure modifications: 2000 update John S. Garavelli Nucleic Acids Res. 2000 January 1; 28(1): 209–211. PMCID: PMC102419 The Prostate Expression Database (PEDB): status and enhancements in 2000 Peter S. Nelson, Nigel Clegg, Burak Eroglu, Victoria Hawkins, Roger Bumgarner, Todd Smith, and Leroy Hood Nucleic Acids Res. 2000 January 1; 28(1): 212–213. PMCID: PMC102457 Kabat Database and its applications: 30 years after the first variability plot George Johnson and Tai Te Wu Nucleic Acids Res. 2000 January 1; 28(1): 214–218. PMCID: PMC102431 IMGT, the international ImMunoGeneTics database Manuel Ruiz, Véronique Giudicelli, Chantal Ginestoux, Peter Stoehr, James Robinson, Julia Bodmer, Steven G. E. Marsh, Ronald Bontrop, Marc Lemaitre, Gérard Lefranc, Denys Chaume, and Marie-Paule Lefranc Nucleic Acids Res. 2000 January 1; 28(1): 219–221. PMCID: PMC102442 FIMM, a database of functional molecular immunology Christian Schönbach, Judice L.Y. Koh, Xin Sheng, Limsoon Wong, and Vladimir Brusic Nucleic Acids Res. 2000 January 1; 28(1): 222–224. PMCID: PMC102489 PRINTS-S: the database formerly known as PRINTS T. K. Attwood, M. D. R. Croning, D. R. Flower, A. P. Lewis, J. E. Mabey, P. Scordis, J. N. Selley, and W. Wright Nucleic Acids Res. 2000 January 1; 28(1): 225–227. PMCID: PMC102408 Increased coverage of protein families with the Blocks Database servers Jorja G. Henikoff, Elizabeth A. Greene, Shmuel Pietrokovski, and Steven Henikoff Nucleic Acids Res. 2000 January 1; 28(1): 228–230. PMCID: PMC102407 SMART: a web-based tool for the study of genetically mobile domains Jörg Schultz, Richard R. Copley, Tobias Doerks, Chris P. Ponting, and Peer Bork Nucleic Acids Res. 2000 January 1; 28(1): 231–234. PMCID: PMC102444 The Protein Data Bank Helen M. Berman, John Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, and Philip E. Bourne Nucleic Acids Res. 2000 January 1; 28(1): 235–242. PMCID: PMC102472 MMDB: 3D structure data in Entrez Yanli Wang, Kenneth J. Addess, Lewis Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, and Stephen H. Bryant Nucleic Acids Res. 2000 January 1; 28(1): 243–245. PMCID: PMC102448 The IMB Jena Image Library of Biological Macromolecules Jan Reichert, Andreas Jabs, Peter Slickers, and Jürgen Sühnel Nucleic Acids Res. 2000 January 1; 28(1): 246–249. PMCID: PMC102466 ModBase, a database of annotated comparative protein structure models Roberto Sánchez, Ursula Pieper, Neboja Mirkovi, Paul I. W. de Bakker, Edward Wittenstein, and Andrej ali Nucleic Acids Res. 2000 January 1; 28(1): 250–253. PMCID: PMC102433 The ASTRAL compendium for protein structure and sequence analysis Steven E. Brenner, Patrice Koehl, and Michael Levitt Nucleic Acids Res. 2000 January 1; 28(1): 254–256. PMCID: PMC102434 SCOP: a Structural Classification of Proteins database Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, and Cyrus Chothia Nucleic Acids Res. 2000 January 1; 28(1): 257–259. PMCID: PMC102479 The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments János Murvai, Kristian Vlahovicek, Endre Barta, Bruno Cataletto, and Sándor Pongor Nucleic Acids Res. 2000 January 1; 28(1): 260–262. PMCID: PMC102474 The Pfam Protein Families Database Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, and Erik L. L. Sonnhammer Nucleic Acids Res. 2000 January 1; 28(1): 263–266. PMCID: PMC102420 ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons Florence Corpet, Florence Servant, Jérôme Gouzy, and Daniel Kahn Nucleic Acids Res. 2000 January 1; 28(1): 267–269. PMCID: PMC102458 The SYSTERS protein sequence cluster set A. Krause, J. Stoye, and M. Vingron Nucleic Acids Res. 2000 January 1; 28(1): 270–272. PMCID: PMC102384 ProClass protein family database Hongzhan Huang, Chunlin Xiao, and Cathy H. Wu Nucleic Acids Res. 2000 January 1; 28(1): 273–276. PMCID: PMC102450 Assigning genomic sequences to CATH Frances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, and Christine A. Orengo Nucleic Acids Res. 2000 January 1; 28(1): 277–282. PMCID: PMC102424 ProTherm, version 2.0: thermodynamic database for proteins and mutants M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, P. Prabakaran, and Akinori Sarai Nucleic Acids Res. 2000 January 1; 28(1): 283–285. PMCID: PMC102403 The 1999 SWISS-2DPAGE database update Christine Hoogland, Jean-Charles Sanchez, Luisa Tonella, Pierre-Alain Binz, Amos Bairoch, Denis F. Hochstrasser, and Ron D. Appel Nucleic Acids Res. 2000 January 1; 28(1): 286–288. PMCID: PMC102456 DIP: the Database of Interacting Proteins Ioannis Xenarios, Danny W. Rice, Lukasz Salwinski, Marisa K. Baron, Edward M. Marcotte, and David Eisenberg Nucleic Acids Res. 2000 January 1; 28(1): 289–291. PMCID: PMC102387 Codon usage tabulated from international DNA sequence databases: status for the year 2000 Yasukazu Nakamura, Takashi Gojobori, and Toshimichi Ikemura Nucleic Acids Res. 2000 January 1; 28(1): 292. PMCID: PMC102460 Transterm: a database of messenger RNA components and signals Grant H. Jacobs, Peter A. Stockwell, Mark J. Schrieber, Warren P. Tate, and Chris M. Brown Nucleic Acids Res. 2000 January 1; 28(1): 293–295. PMCID: PMC102492 ASDB: database of alternatively spliced genes I. Dralyuk, M. Brudno, M. S. Gelfand, M. Zorn, and I. Dubchak Nucleic Acids Res. 2000 January 1; 28(1): 296–297. PMCID: PMC102426 Transcription Regulatory Regions Database (TRRD): its status in 2000 N. A. Kolchanov, O. A. Podkolodnaya, E. A. Ananko, E. V. Ignatieva, I. L. Stepanenko, O. V. Kel-Margoulis, A. E. Kel, T. I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, N. L. Podkolodny, A. N. Naumochkin, I. M. Korostishevskaya, A. G. Romashchenko, and G. C. Overton Nucleic Acids Res. 2000 January 1; 28(1): 298–301. PMCID: PMC102412 The Eukaryotic Promoter Database (EPD) Rouaïda Cavin Périer, Viviane Praz, Thomas Junier, Claude Bonnard, and Philipp Bucher Nucleic Acids Res. 2000 January 1; 28(1): 302–303. PMCID: PMC102462 The ENZYME database in 2000 Amos Bairoch Nucleic Acids Res. 2000 January 1; 28(1): 304–305. PMCID: PMC102465 REBASE – restriction enzymes and methylases Richard J. Roberts and Dana Macelis Nucleic Acids Res. 2000 January 1; 28(1): 306–307. PMCID: PMC102482 Object-oriented Transcription Factors Database (ooTFD) David Ghosh Nucleic Acids Res. 2000 January 1; 28(1): 308–310. PMCID: PMC102451 COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation Olga V. Kel-Margoulis, Aida G. Romashchenko, Nikolay A. Kolchanov, Edgar Wingender, and Alexander E. Kel Nucleic Acids Res. 2000 January 1; 28(1): 311–315. PMCID: PMC102399 TRANSFAC: an integrated system for gene expression regulation E. Wingender, X. Chen, R. Hehl, H. Karas, I. Liebich, V. Matys, T. Meinhardt, M. Prüß, I. Reuter, and F. Schacherer Nucleic Acids Res. 2000 January 1; 28(1): 316–319. PMCID: PMC102445 The Histone Database: a comprehensive WWW resource for histones and histone fold-containing proteins Steven A. Sullivan, L. Aravind, Izabela Makalowska, Andreas D. Baxevanis, and David Landsman Nucleic Acids Res. 2000 January 1; 28(1): 320–322. PMCID: PMC102427 MEROPS: the peptidase database Neil D. Rawlings and Alan J. Barrett Nucleic Acids Res. 2000 January 1; 28(1): 323–325. PMCID: PMC102440 Aminoacyl-tRNA synthetases database Y2K Maciej Szymanski and Jan Barciszewski Nucleic Acids Res. 2000 January 1; 28(1): 326–328. PMCID: PMC102446 The Homeodomain Resource: a prototype database for a large protein family Sharmila Banerjee-Basu, Joseph F. Ryan, and Andreas D. Baxevanis Nucleic Acids Res. 2000 January 1; 28(1): 329–330. PMCID: PMC102490 HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project Reiko Kikuno, Takahiro Nagase, Mikita Suyama, Mina Waki, Makoto Hirosawa, and Osamu Ohara Nucleic Acids Res. 2000 January 1; 28(1): 331–332. PMCID: PMC102416 The DExH/D protein family database Eckhard Jankowsky and Anja Jankowsky Nucleic Acids Res. 2000 January 1; 28(1): 333–334. PMCID: PMC102432 SENTRA, a database of signal transduction proteins Mark D’Souza, Margaret F. Romine, and Natalia Maltsev Nucleic Acids Res. 2000 January 1; 28(1): 335–336. PMCID: PMC102390 HOX Pro: a specialized database for clusters and networks of homeobox genes Alexander V. Spirov, Timothy Bowler, and John Reinitz Nucleic Acids Res. 2000 January 1; 28(1): 337–340. PMCID: PMC102436 Olfactory Receptor Database: a sensory chemoreceptor resource Emmanouil Skoufos, Luis Marenco, Prakash M. Nadkarni, Perry L. Miller, and Gordon M. Shepherd Nucleic Acids Res. 2000 January 1; 28(1): 341–343. PMCID: PMC102443 InBase, the Intein Database Francine B. Perler Nucleic Acids Res. 2000 January 1; 28(1): 344–345. PMCID: PMC102441 Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database Robert W. Shafer, Duane R. Jung, Bradley J. Betts, Yinong Xi, and Matthew J. Gonzales Nucleic Acids Res. 2000 January 1; 28(1): 346–348. PMCID: PMC102477 Atlas of Genetics and Cytogenetics in Oncology and Haematology, an Interactive Database Jean-Loup Huret, Sylvaine Le Minor, Franck Dorkeld, Philippe Dessen, and Alain Bernheim Nucleic Acids Res. 2000 January 1; 28(1): 349–351. PMCID: PMC102493 dbSNP: a database of single nucleotide polymorphisms Elizabeth M. Smigielski, Karl Sirotkin, Minghong Ward, and Stephen T. Sherry Nucleic Acids Res. 2000 January 1; 28(1): 352–355. PMCID: PMC102496 HGBASE: a database of SNPs and other variations in and around human genes Anthony J. Brookes, Heikki Lehväslaiho, Marianne Siegfried, Jana G. Boehm, Yan P. Yuan, Chandra M. Sarkar, Peer Bork, and Flavio Ortigao Nucleic Acids Res. 2000 January 1; 28(1): 356–360. PMCID: PMC102467 ALFRED: an allele frequency database for diverse populations and DNA polymorphisms Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, and Kenneth K. Kidd Nucleic Acids Res. 2000 January 1; 28(1): 361–363. PMCID: PMC102486 Keio Mutation Database (KMDB) for human disease gene mutations Shinsei Minoshima, Susumu Mitsuyama, Saho Ohno, Takashi Kawamura, and Nobuyoshi Shimizu Nucleic Acids Res. 2000 January 1; 28(1): 364–368. PMCID: PMC102495 KinMutBase, a database of human disease-causing protein kinase mutations Kaj A. E. Stenberg, Pentti T. Riikonen, and Mauno Vihinen Nucleic Acids Res. 2000 January 1; 28(1): 369–371. PMCID: PMC102425 Update of KEYnet: a gene and protein names database for biosequences functional organisation D. Catalano, F. Licciulli, D. D’Elia, and M. Attimonelli Nucleic Acids Res. 2000 January 1; 28(1): 372–373. PMCID: PMC102452 AAindex: Amino Acid index database Shuichi Kawashima and Minoru Kanehisa Nucleic Acids Res. 2000 January 1; 28(1): 374. PMCID: PMC102411 Database of non-canonical base pairs found in known RNA structures Uma Nagaswamy, Neil Voss, Zhengdong Zhang, and George E. Fox Nucleic Acids Res. 2000 January 1; 28(1): 375–376. PMCID: PMC102435 The University of Minnesota Biocatalysis/Biodegradation Database: microorganisms, genomics and prediction Lynda B. M. Ellis, C. Douglas Hershberger, and Lawrence P. Wackett Nucleic Acids Res. 2000 January 1; 28(1): 377–379. PMCID: PMC102401 LIGAND: chemical database of enzyme reactions Susumu Goto, Takaaki Nishioka, and Minoru Kanehisa Nucleic Acids Res. 2000 January 1; 28(1): 380–382. PMCID: PMC102410 |