| | Articles Identification of functionally relevant histidine residues in the apoptotic nuclease CAD Gregor Meiss, Sebastian Richard Scholz, Christian Korn, Oleg Gimadutdinow, and Alfred Pingoud Nucleic Acids Res. 2001 October 1; 29(19): 3901–3909. PMCID: PMC60245 Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation Carmen Burkhardt and Martin Zacharias Nucleic Acids Res. 2001 October 1; 29(19): 3910–3918. PMCID: PMC60250 Characterisation of PAUSE-1, a powerful silencer in the human plasminogen activator inhibitor type 2 gene promoter Steven M. Ogbourne and Toni M. Antalis Nucleic Acids Res. 2001 October 1; 29(19): 3919–3927. PMCID: PMC60233 A computational approach to identify genes for functional RNAs in genomic sequences Richard J. Carter, Inna Dubchak, and Stephen R. Holbrook Nucleic Acids Res. 2001 October 1; 29(19): 3928–3938. PMCID: PMC60242 PNRC2 is a 16 kDa coactivator that interacts with nuclear receptors through an SH3-binding motif Dujin Zhou and Shiuan Chen Nucleic Acids Res. 2001 October 1; 29(19): 3939–3948. PMCID: PMC60244 Crystallographic studies on damaged DNAs IV. N 4-methoxycytosine shows a second face for Watson–Crick base-pairing, leading to purine transition mutagenesis M. Tofazzal Hossain, Tomoko Sunami, Masaru Tsunoda, Takaaki Hikima, Toshiyuki Chatake, Yoshihito Ueno, Akira Matsuda, and Akio Takénaka Nucleic Acids Res. 2001 October 1; 29(19): 3949–3954. PMCID: PMC60249 Protein and DNA requirements of the bacteriophage HP1 recombination system: a model for intasome formation Dominic Esposito, Julia S. Thrower, and John J. Scocca Nucleic Acids Res. 2001 October 1; 29(19): 3955–3964. PMCID: PMC60247 Nuclear antisense effects of neutral, anionic and cationic oligonucleotide analogs Peter Sazani, Shin-Hong Kang, Martin A. Maier, Changfu Wei, Jennifer Dillman, James Summerton, Muthiah Manoharan, and Ryszard Kole Nucleic Acids Res. 2001 October 1; 29(19): 3965–3974. PMCID: PMC60237 Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA Yunfu Lin and Alan S. Waldman Nucleic Acids Res. 2001 October 1; 29(19): 3975–3981. PMCID: PMC60240 Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition Alim Seit-Nebi, Ludmila Frolova, Just Justesen, and Lev Kisselev Nucleic Acids Res. 2001 October 1; 29(19): 3982–3987. PMCID: PMC60236 PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches Wataru Fujibuchi, John S. J. Anderson, and David Landsman Nucleic Acids Res. 2001 October 1; 29(19): 3988–3996. PMCID: PMC60241 Methylation of the nucleobases in RNA oligonucleotides mediates duplex–hairpin conversion Ronald Micura, Werner Pils, Claudia Höbartner, Karl Grubmayr, Marc-Olivier Ebert, and Bernhard Jaun Nucleic Acids Res. 2001 October 1; 29(19): 3997–4005. PMCID: PMC115353 A computational scan for U12-dependent introns in the human genome sequence Aaron Levine and Richard Durbin Nucleic Acids Res. 2001 October 1; 29(19): 4006–4013. PMCID: PMC60238 An active retrotransposon in Candida albicans Nicholas J. Holton, Timothy J. D. Goodwin, Margaret I. Butler, and Russell T. M. Poulter Nucleic Acids Res. 2001 October 1; 29(19): 4014–4024. PMCID: PMC60234 Covalent capture of a human O6-alkylguanine alkyltransferase–DNA complex using N1,O6-ethanoxanthosine, a mechanism-based crosslinker David M. Noll and Neil D. Clarke Nucleic Acids Res. 2001 October 1; 29(19): 4025–4034. PMCID: PMC60232 Suppression of sterol 12α-hydroxylase transcription by the short heterodimer partner: insights into the repression mechanism Antonio del Castillo-Olivares and Gregorio Gil Nucleic Acids Res. 2001 October 1; 29(19): 4035–4042. PMCID: PMC60248 Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin Ilya Freidkin and Don J. Katcoff Nucleic Acids Res. 2001 October 1; 29(19): 4043–4051. PMCID: PMC60231 Psoralen-modified clamp-forming antisense oligonucleotides reduce cellular c-Myc protein expression and B16-F0 proliferation Delisha A. Stewart, Shelia D. Thomas, Charles A. Mayfield, and Donald M. Miller Nucleic Acids Res. 2001 October 1; 29(19): 4052–4061. PMCID: PMC60243 New chemically reactive dsDNAs containing single internucleotide monophosphoryldithio links: reactivity of 5′-mercapto-oligodeoxyribonucleotides Valeri G. Metelev, Oxana A. Borisova, Eugene M. Volkov, Tatiana S. Oretskaya, and Nina G. Dolinnaya Nucleic Acids Res. 2001 October 1; 29(19): 4062–4069. PMCID: PMC60246 Activation of the human PAX6 gene through the exon 1 enhancer by transcription factors SEF and Sp1 Jessica B. Zheng, Yi-Hong Zhou, Tapati Maity, Warren S.-L. Liao, and Grady F. Saunders Nucleic Acids Res. 2001 October 1; 29(19): 4070–4078. PMCID: PMC60230 Identification and characterisation of a developmentally regulated mammalian gene that utilises –1 programmed ribosomal frameshifting Kazuhiro Shigemoto, Jane Brennan, Elizabeth Walls, Christine J. Watson, David Stott, Peter W. J. Rigby, and Alastair D. Reith Nucleic Acids Res. 2001 October 1; 29(19): 4079–4088. PMCID: PMC60235 Comparison between CUUG and UUCG tetraloops: thermodynamic stability and structural features analyzed by UV absorption and vibrational spectroscopy Vladimir Baumruk, Catherine Gouyette, Tam Huynh-Dinh, Jian-Sheng Sun, and Mahmoud Ghomi Nucleic Acids Res. 2001 October 1; 29(19): 4089–4096. PMCID: PMC60239 NAR Methods Online Sugar additives for MALDI matrices improve signal allowing the smallest nucleotide change (A:T) in a DNA sequence to be resolved Mona Shahgholi, Benjamin A. Garcia, Norman H. L. Chiu, Paul J. Heaney, and Kai Tang Nucleic Acids Res. 2001 October 1; 29(19): e91. PMCID: PMC60251 DNA microarrays with stem–loop DNA probes: preparation and applications Natalia E. Broude, Karen Woodward, Robert Cavallo, Charles R. Cantor, and David Englert Nucleic Acids Res. 2001 October 1; 29(19): e92. PMCID: PMC60252 Quantitative detection of single nucleotide polymorphisms for a pooled sample by a bioluminometric assay coupled with modified primer extension reactions (BAMPER) Guo-hua Zhou, Masao Kamahori, Kazunori Okano, Gao Chuan, Kunio Harada, and Hideki Kambara Nucleic Acids Res. 2001 October 1; 29(19): e93. PMCID: PMC60253 C-SPACE (cleavage-specific amplification of cDNA ends): a novel method of ribozyme-mediated gene identification Martin Krüger, Carmela Beger, Peter J. Welch, Jack R. Barber, and Flossie Wong-Staal Nucleic Acids Res. 2001 October 1; 29(19): e94. PMCID: PMC60254 Molecular indexing of human genomic DNA D. Ross Sibson and Fiona E. M. Gibbs Nucleic Acids Res. 2001 October 1; 29(19): e95. PMCID: PMC60255 |