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| Year 2006 |
| Locatis C, Gaines C, Liu W, Gill MJ, Carney J, Foster J, McCall V, Woods M. A Blended Training Approach Using Videoconferencing for Distance Education. Journal of the Medical Library Association, October 2006, 94(4):464-8 |
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| Ackerman MJ. Anatomy in the Digital Age. In: Rifkin, B.A., M.J. Ackerman, J. Folkenberg. Human Anatomy (From the Renaissance to the Digital Age), Abrams, New York, NY, 318-329, 2006. |
| (Abstract) (PDF)
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| Demner-Fushman D, Lin J. Answer Extraction, Semantic Clustering, and Extractive Summarization for Clinical Question Answering. Proceedings of the 21th International Conference on Computational Linguistics and 44th Annual Meeting of the Association for Computational Linguistics (COLING/ACL 2006), July 2006, Sydney, Australia |
| (Abstract) (PDF)
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| Rosemblat G, Graham L. A Pragmatic Approach to Summary Extraction in Clinical Trials. In Proceedings of the BioNLP Workshop on Linking Natural Language Processing and Biology at HLT-NAACL 06, pages 124-125, New York City, June 2006. |
| (Abstract) (PDF)
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| Ruch P, Tbahriti I, Bobeill J, Aronson AR. Argumentative Feedback: A Linguistically-motivated Term Expansion for Information Retrieval. Proc. COLING/ACL 2006, 675-82 |
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| Masseroli M, Kilicoglu H, Lang F-M, Loane RF, Rindflesch TC. Argument-predicate Distance as a Filter for Enhancing Precision in Extracting Predications on the Genetic Etiology of Disease. BMC Bioinformatics 2006; 7:291 |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Ackerman MJ, Schardt CM, Keitz SA. askMEDLINE: a Report on a Year-long Experience. AMIA Annu Symp Proc. 2006;923. |
| (Abstract) (PDF)
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| Keselman A, Tse T, Crowell J, Browne A, Ngo L, Zeng Q. Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study. Mednet 2006 |
| (Abstract) (PDF)
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| Demner-Fushman D, Few B, Hauser SE, Thoma GR. Automatically Identifying Health Outcome Information in MEDLINE Records . J Am Med Inform Assoc. 2006 Jan-Feb;13(1):52-60 |
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| Kim J, Le DX, Thoma GR. Automatic Extraction of Bibliographic Information from Biomedical Online Journal Articles Using a String Matching Algorithm . Proc. 19th IEEE International Symposium on Computer-Based Medical Systems, June 2006, Salt Lake City, Utah; 905-10 |
| (Abstract) (PDF)
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| Yao J, Antani S, Long LR, Thoma GR, Zhang Z. Automatic Medical Image Annotation and Retrieval Using SECC . Proc. 19th International Symposium on Computer-Based Medical Systems (CBMS 2006), June 2006, Salt Lake City, Utah; 105-10 |
| (Abstract) (PDF)
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| Liu F, Fontelo P, Ackerman MJ. BabelMeSH: Development of a Cross-Language Tool for MEDLINE/PubMed. Proc. AMIA 2006, American Medical Informatics Association, Bethesda, MD, pg. 1012, 2006 |
| (Abstract) (PDF)
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| Neveol A, Zeng K, Bodenreider O. Besides Precision and Recall: Exploring Alternative Approaches to Evaluating an Automatic Indexing Tool for MEDLINE. Proc AMIA Symp 2006:589-593 |
| (Abstract) (PDF)
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| Bodenreider O, Stevens R. Bio-ontologies: Current Trends and Future Directions. Briefings in Bioinformatics 2006;7(3):256-274 |
| (Abstract) (PDF)
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| Mitchell JA, Fomous C, Fun J. Challenges and Strategies of the Genetics Home Reference. Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
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| Zou J, Le DX, Thoma GR. Combining DOM Tree and Geometric Layout Analysis for Online Medical Journal Article Segmentation . Proc. Joint Conference on Digital Libraries (JCDL), June 2006, Chapel Hill, NC; 119-28 |
| (Abstract) (PDF)
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| Bodenreider O, Zhang S. Comparing the Representation of Anatomy in the FMA and SNOMED CT. Proc AMIA Symp 2006:46-50 |
| (Abstract) (PDF)
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| Mougin F, Bodenreider O. Comparing Two Approaches to Eliminating Cycles in Terminological Systems. Proceedings of the 15th conference on Pattern Recognition and Artificial Intelligence (RFIA 2006)(electronic proceedings) |
| (Abstract) (PDF)
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| Ackerman MJ. Computer Briefs: Mac versus PC. J. Med. Pract. Manag., 21(6):329-330, 2006 |
| (Abstract) (PDF)
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| Ackerman MJ. Computer Briefs: The Open Triangle. J. Med. Pract. Manag., 22(2):105-106, 2006 |
| (Abstract) (PDF)
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| Tolentino H, Matters M, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne D. Concept Negation in Free Text Components of Vaccine Safety Reports. AMIA Annu Symp Proc. 2006;1122 |
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| Gordon S, Zimmerman G, Long LR, Antani S, Jeronimo J, Greenspan H. Content Analysis of Uterine Cervix Images: Initial Steps Towards Content Based Indexing and Retrieval of Cervigrams. Proc. of SPIE Vol. 6144 61444U-7 |
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| Rosemblat G, Graham L. Cross-Language Search in a Monolingual Health Information System: Flexible Designs and Lexical Processes. In Proceedings of the 9th ISKO Conference, pages 173-182, Vienna, Austria, July 2006. |
| (Abstract) (PDF)
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| Mougin F, Burgun A, Bodenreider O. Data Integration Through Data Elements: Mapping Data Elements to Terminological Resources . Proceedings of the Second Interntional Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:52-59 |
| (Abstract) (PDF)
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| Thoma GR, Mao S, Misra D, Rees J. Design of a Digital Library for Early 20th Century Medico-legal Documents. Proc. ECDL 2006. Eds: Gonzalo J et al. Berlin: Springer-Verlag; LNCS 4172: 147-57. |
| (Abstract) (PDF)
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| Jeronimo J, Long R, Neve L, Bopf M, Antani K, Schiffman M. Digital Tools for Collecting Data from Cervigrams for Research and Training in Colposcopy. Journal of Lower Genital Tract Disease, 2006, 10(1):16-25. |
| (Abstract) (PDF)
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| Divita G, Browne AC, Loanne R. dTagger: A POS Tagger. AMIA 2006 Symposium Proceedings pp 201-203 |
| (Abstract) (PDF)
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| Bodenreider O, Peters L, McCray A. Enhancing Biomedical Ontologies through Alignment of Semantic Relationships: Exploratory Approaches. Proc AMIA Symp 2006:804-808 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O, Golbreich C. Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. In: Altman RB, Dunker AK, Hunter L, Murray TA, Klein TE, editors. Pacific Symposium on Biocomputing 2006: World Scientific; 2006. p. 200-211. |
| (Abstract) (PDF)
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| Hristovski D, Friedman C, Rindflesch TC. Exploiting Semantic Relations for Literature-Based Discovery . AMIA Annu Symp Proc. 2006; 349-53 |
| (Abstract) (PDF)
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| Zeng QT, Tse T. Exploring and Developing Consumer Health Vocabularies. Journal of the American Medical Informatics Association. 2006 Jan/Feb;(1)24-9. |
| (Abstract) (PDF)
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| Graham L, Tse T, Keselman A. Exploring User Navigation during Online Health Information Seeking. Proc. AMIA 2006 |
| (Abstract) (PDF)
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| Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, Ruch P, Ruiz ME, Smith LH, Tanabe LK, Wilbur WJ, Aronson AR. Finding Relevant Passages in Scientific Articles: Fusion of Automatic Approaches vs. an Interactive Team Effort. Proc TREC 2006, 569-76 |
| (Abstract) (PDF)
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| Lin J, Karakos D, Demner-Fushman D, Khudanpur S. Generative Content Models for Structural Analysis of Medical Abstracts. Proceedings of the 2006 Workshop on Biomedical Natural Language Processing (BioNLP'06), June 2006, New York City, New York |
| (Abstract) (PDF)
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| Fomous C, Mitchell JA, McCray A. Genetics Home Reference: Helping Patients Understand the Role of Genetics in Health and Disease. Community Genet 2006;9:274-278 |
| (Abstract) (PDF)
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| Tsaparas P, Marino-Ramirez L, Bodenreider O. Global Similarity and Local Divergence in Human and Mouse Gene Co-expression Networks . BMC Evol Biol 2006;6(1):70 |
| (Abstract) (PDF)
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| Sabir TF, Hauser SE, Thoma GR. Historical Author Affiliations Assist Verification of Automatically Generated MEDLINE Citations . Proc AMIA 2006 |
| (Abstract) (PDF)
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| Siegel ER, Logan RA, Harnsberger RL, Cravedi K, Krause JA, Lyon B, Hajarian K, Uhl J, Ruffin A, Lindberg DA. Information Rx: Evaluation of a New Informatics Tool for Physicians, Patients, and Libraries . Information Services and Use. 2006: 16(1): 1-10 |
| (Abstract) (PDF)
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| Thoma GR, Ford G, Chung M, Vasudevan K, Antani S. Interactive Publications: Creation and Usage . Proc. IS and T/SPIE Electronic Imaging 2006: Digital Publishing. San Jose, CA. Jan 15-19, 2006. |
| (Abstract) (PDF)
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| He Y, Kayaalp M. Interpretation of Data and Identification of Information are Sine Qua Non for Modern Digital Information Services . Proceedings of AMIA Symposium, 2006 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. Law and Order: Assessing and Enforcing Compliance with Ontological Modeling Principles in the Foundational Model of Anatomy . Computers in Biology and Medicine 2006; 36(6-7):674-693 |
| (Abstract) (PDF)
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| Bodenreider O. Lexical, Terminological and Ontological Resources for Biological Text Mining . Ananiadou S, McNaught J, editors. Text mining for biology and biomedicine: Artech House; 2006. p. 43-66. |
| (Abstract) (PDF)
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| Mougin F, Burgun A, Bodenreider O. Mapping Data Elements to Terminological Resources for Integrating Biomedical Data Sourcse. BMC Bioinformatics 2006;7(Suppl 3):S6 |
| (Abstract) (PDF)
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| Antani S, Cheng J, Long J, Long LR, Thoma GR. Medical Validation and CBIR of Spine X-ray Images over the Internet . Proc. ISandT/SPIE Electronic Imaging Science and Technology 2006: Internet Imaging VII. San Jose. CA Jan 15-19, 2006, SPIE Vol. 6061 pp. 60610J (1-9). |
| (Abstract) (PDF)
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| Demner-Fushman D, Hauser SE, Humphrey SM, Ford GM, Jacobs JL, Thoma GR. MEDLINE as a Source of Just-in-Time Answers to Clinical Questions. Proceeding of the 2006 Annual Symposium of the American Medical Informatics Association (AMIA 2006) |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. NLM Anatomical Ontology Alignment system: Results of the 2006 ontology alignment contest. Proceedings of the Ontology Alignment Evaluation Initiative 2006 Campaign (OAEI 2006) 2006:145-156 |
| (Abstract) (PDF)
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| Locatis C. Performance, Instruction, and Technology in Health Care . In: Reiser R, Dempsey J, editors. Trends and Issues in Instructional Design and Technology. New Jersey: Merrill/Prentice-Hall:2006. p. 197-208 |
| (Abstract) (PDF)
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| Huang X, Lin J, Demner-Fushman D. PICO as a Knowledge Representation for Clinical Questions. Proceeding of the 2006 Annual Symposium of the American Medical Informatics Association (AMIA 2006) |
| (Abstract) (PDF)
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| Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau A. Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. In: Proceedings of IEEE International Conference on Data Mining (ICDM) 2006, Workshop on Data Mining in Bioinformatics: IEEE Computer Society Press; 2006. p. 114 - 119 |
| (Abstract) (PDF)
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| Xu X, Lee DJ, Antani S, Long RL. Pre-Indexing for Fast Partial Shape Matching of Vertebrae Images . Proc. 19th International Symposium on Computer-Based Medical Systems (CBMS 2006), June 2006, Salt Lake City, Utah; 105-10 |
| (Abstract) (PDF)
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| Hauser SE, Demner-Fushman D, Ford GM, Jacobs JL, Thoma GR. Preliminary Comparison of Three Search Engines for Point of Care Access to MEDLINE Citations. Proceeding of the 2006 Annual Symposium of the American Medical Informatics Association (AMIA 2006) |
| (Abstract) (PDF)
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| Jeronimo J, Long R, Neve L, Ferris D, Noller K, Spitzer M, Mitra S, Guo J, Nutter B, Castle P, Herrero R, Rodriguez AC, Schiffman M. Preparing Digitized Cervigrams for Colposcopy Research and Education: Determination of Optimal Resolution and Compression Parameters . Journal of Lower Genital Tract Disease, Jan 2006, 10(1):39-44. |
| (Abstract) (PDF)
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| Muin M, Fontelo P, Ackerman MJ. PubMed Interact: an Interactive Search Application for MEDLINE/PubMed. Proc. AMIA 2006, American Medical Informatics Association, Bethesda, MD, pg. 1039, 2006 |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: A Web Service for Standard Drug Information. Proc AMIA Symp 2006:1198 |
| (Abstract) (PDF)
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| Sneiderman, C, Demner-Fushman D, Fiszman M, Rosemblat G, Lang FM, Norwood D, Rindflesch TC. Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. Proceeding of the 2006 Annual Symposium of the American Medical Informatics Association (AMIA 2006) |
| (Abstract) (PDF)
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| Slaughter LA, Soergel D, Rindflesch TC. Semantic Representation of Consumer Questions and Physician Answers. Int J Med Inform. 2006;75(7):513-29 |
| (Abstract) (PDF)
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| Demner-Fushman D, Lin J. Situated Question Answering in the Clinical Domain: Selecting the Best Drug Treatment for Diseases. Proceedings of COLING/ACL 2006 Workshop on Task-Focused Summarization and Question Answering, July 2006, Sydney, Australia |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Ackerman MJ. SMS (Short Message Service) for Medline/Pubmed Access at the Point-of Care. Telemed. and e-Health, 12(2):237, 2006 |
| (Abstract) (PDF)
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| Fiszman M, Rindflesch TC, Kilicoglu H. Summarizing Drug Information in Medline Citations. AMIA Annu Symp Proc. 2006; 254-8 |
| (Abstract) (PDF)
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| Gallagher ME, Moffatt C. Surviving Change: The First Step Toward Sustaining Your Digital Library . J. Trant and D. Bearman (eds.). Museums and the Web 2006: Proceedings, Toronto: Archives and Museum Informatics, published 2006 Mar. |
| (Abstract) (PDF)
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| Muin M, Fontelo P. Technical Development of PubMed Interact: an Improved Interface for MEDLINE/PubMed Searches. BMC Med Inform Decis Mak. 2006 Nov 3;6:36 |
| (Abstract) (PDF)
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| Long RL, Antani S, Jeronimo J, Schiffman M, Bopf M, Neve L, Cornwall C, Budihas SC, Thoma GR. Technology for Medical Education, Research, and Disease Screening by Exploitation of Biomarkers in a Large Collection of Uterine Cervix Images. Proc. 19th International Symposium on Computer-Based Medical Systems (CBMS 2006), June 2006, Salt Lake City, Utah; 826-31 |
| (Abstract) (PDF)
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| Rosemblat G, Logan R, Tse T, Graham L. Text Features and Readability: Expert Evaluation of Consumer Health Text . Mednet 2006: 11th World Congress on Internet in Medicine the Society for Internet in Medicine. October 14-16, 2006. Toronto, Canada. |
| (Abstract) (PDF)
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| Keselman A, Massengale L, Ngo L, Browne A, Zeng Q. The Effect of User Factors on Consumer Familiarity with Health Terms: Using Gender as a Proxy for Background Knowledge about Gender-Specific Illnesses. ISBMDA 2006: 472-481 |
| (Abstract) (PDF)
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| Golbreich C, Zhang S, Bodenreider O. The Foundational Model of Anatomy in OWL: Experience and Perspectives. Journal of Web Semantics: Science, Services and Agents on the World Wide Web 2006;4(3):181-195. |
| (Abstract) (PDF)
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| Lin J, Demner-Fushman D. The Role of Knowledge in Conceptual Retrieval: A Study in the Domain of Clinical Medicine. Proceedings of the 29th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR 2006), pages 99-106, August 2006, Seattle, Washington |
| (Abstract) (PDF)
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| Fomous C, Miller N. The Role of the National Library of Medicine Web Sites in Newborn Screening Education. Ment Retard Dev Disabil Res Rev. 2006;12(4):305-12 |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Muin M, Tolentino H, Ackerman MJ. Txt2MEDLINE: Text-Messaging Access to MEDLINE/PubMed. Proc.AMIA Annu Symp Proc. 2006;:259-63. |
| (Abstract) (PDF)
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| Rosemblat G, Tse T. User Study of a Spanish-language ClinicalTrials.gov Prototype System. To appear in Proceedings of the American Medical Informatics Association Annual Conference (AMIA 2006), Washington, DC, November 2006 pp 659-664. |
| (Abstract) (PDF)
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| Vizenor L, Bodenreider O. Using Dependence Relations in MeSH as a Framework for the Analysis of Disease Information in Medline . Proceddings of the Second International Symposium on Semantic Mining in Biomedicine (SMBM-2006) 2006:76-83 |
| (Abstract) (PDF)
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| Woods JW, Sneiderman CA, Hameed K, Ackerman MJ, Hatton C. Using UMLS Metathesaurus Concepts to Describe Medical Images: Dermatology Vocabulary. Comput Biol Med. 2006 Jan;36(1):89-100. |
| (Abstract) (PDF)
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| Mougin F, Burgun A, Bodenreider O. Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. Proc AMIA Symp 2006:574-578. |
| (Abstract) (PDF)
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| Humphrey SM, Rogers WJ, Kilicoglu H, Demner-Fushman D, Rindflesch TC. Word Sense Disambiguation by Selecting the Best Semantic Type Based on Journal Descriptor Indexing: Preliminary Experiment . Journal of the American Society for Information Science and Technology. 2006 Jan 1;57(1):96-113. |
| (Abstract) (PDF)
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