Mouse Genome Resources
NCBI Web Resources:
BLAST. Compare your sequence to different mouse-derived sequences.
Clone Finder. Find clones based on BAC end sequence alignments.
Clone Registry. Find information about specific BAC clones, including sequencing status, end sequence and Fingerprint information.
dbSNP. Database of SNPs and other genetic variation.
e-PCR. Check your sequence and view in genomic context.
Entrez Gene. Focal point for genes and associated information
Full-Length cDNAs. Find info on various efforts to sequence entire genes.
Genome Project. Complete and in-progress large-scale sequencing, assembly, annotation and mapping projects.
GEO. Gene Expression Omnibus, a public repository for expression data.
HomoloGene. Putative homologies among human, mouse, rat, and zebrafish.
Homology Map. Blocks of conserved synteny between mouse and human.
MapViewer. Interactive viewer for genome maps, sequences, and genes.
RefSeq. Reference sequences of genomic contigs, mRNAs, and proteins.
SAGEmap. Gene expression results from SAGE tags mapped to sequences.
SPLIGN. A tool for aligning mRNAs to genomic sequence.
Trace Archive. Collection of raw sequence traces from various sequencing projects.
UniGene. Organization of transcribed sequences into gene-based clusters.
UniSTS. A non- redundant collection of STSs with links to maps and sequence.
FTP Sites:
dbSNP
Entrez Gene
Genomes
RefSeq
UniGene
UniSTS |
Genomic resources for the mouse are increasing at an astounding pace. The ability to manipulate the mouse genome coupled with the availability of genome sequence make the mouse a unique research tool.
This page is a gateway to mouse resources in and beyond NCBI.
Just In... 
- NCBI Build 37.1 released! Over 90% of the mouse genome in finished form. To see the data, click here.
- Current and previous builds available! The Map Viewer and organism specific BLAST pages now support access to the current and previous builds for the mouse genome.
- Celera assembly now available! The Celera mixed strain whole genome assembly is now available in the MapViewer. Currently, only NCBI annotation is provided. To see the Reference and Celera assemblies for Mmu1, click here.
- GENSAT! View images of gene expression in the central nervous system of the mouse. For more information, click here.
-GeneTrap clones are here! Alignment of sequences from Gene Trap clones to the genome are now available in the Map Viewer (view chr1). In addition, a BLASTable database of Gene Trap based sequences are available on the Mouse BLAST page.
-MICER is here! Alignment of sequences derived from the Bradley lab Mutagenic Insertion and Chromosome Engineering Resource are now available: view chr11.
- View alternative assemblies: Finished sequence from strains other than C57BL/6J is also assembled and annotated. Select the 'assembly' map to see alternate assemblies. Click here for an example.
BLAST curated BAC contigs, and mouse WGS shotgun assemblies.
Mouse Genome Monthly: a newsletter from the mouse genome sequencers to the mouse research community.
November 2001
December 2001
January 2002
April 2002
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Jump to the Genome:
NCBI Build 37
see build stats
More Pages:
Guides:
NIH Trans-Mouse
Glossary
Maps and Sequence:
MGI
Ensembl
UCSC
BAC Fingerprint
BAC end sequence
Jax Mapping Panels
Genoscope RH Map
EU RH Map
IGTC
MICER
Strain Resources:
IMSR
The Jackson Laboratory
Harwell Mouse Resource
EMMA
ORNL
Genealogy Wall Chart
MMRRC
Expression Resources
GXD
Edinburgh mouse atlas
Vancouver mouse atlas
Allen Institute for Brain Science: Allen Brain Atlas
Other Resources:
CIDR
MMDAP
FANTOM
I.M.A.G.E.
Mouse Genetics - online
NIA cDNA Project
The GeneNetwork |
Genomic Biology 