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AFNI/SUMA Documentation

History of AFNI updates

RSS feed for all documentation types

Suggested reading for beginners

ReadMe

Attributes in the AFNI Dataset Header

Compressed Dataset .BRIK Files

Driving AFNI from a Plugout or a Startup Script

Unix Environment Variables Used by AFNI

Major portions of this software are Copyright 1994-2000

Program Help

1dcat: Usage: 1dcat a.1D b.1D ...

1ddot: Usage: 1ddot [options] 1Dfile 1Dfile ...

1deval: Usage: 1deval [options] -expr 'expression'

1dfft: Usage: 1dfft [options] infile outfile

1dgrayplot: Usage: 1dgrayplot [options] tsfile

All Program Help ...

Reference Manuals

1dplot: Graph columns of *.1D type time series to screen

24swap: Swaps byte pairs and/or quadruples on listed files

2dImReg: Slice-by-slice image registration of FMRI 3D datasets

2swap: Swap byte pairs for inter-operating system compatibility

3daxialize

All Reference Manuals ...

Instructional Videos

Video Demo: Image Projection

Video Demo: Threshold and Pbar Locking

Video Demo: Threshold and Pbar Locking - MPEG

Video Demo: Image and Graph Viewers

Video Demo: Grayscale Adjustment

All Instructional Videos ...

HowTo Packages

HowTo 00 : Installing AFNI

HowTo 01 : Processing Block Design Data with AFNI

HowTo 02 : Regression Analysis with AFNI '3dDeconvolve'

HowTo 03 : Stimulus Timing Design (intro to AFNI 'RSFgen')

HowTo 05 : Analysis of Variance with AFNI '3dANOVA' programs

All HowTo Packages ...

Class Handouts

AFNI Regression

Unix Essentials

Introduction and Overview of AFNI

Image Input to AFNI - to3d and other data formats

Using AFNI Interactively

All Class Handouts ...

FAQs

What does the word AFNI mean?

When will you port AFNI to Windows?

What do I do if AFNI crashes?

Can I use AFNI on a 24-bit X server?

What do I do if I run out of colors?

Misc Items

Basis Function Suggestions

Notes on Parallelizing AFNI Programs (3dDeconvolve On FreeBSD)

3dDeconvolve Upgrades - Summer 2004

Mapping Data to the Talairach Atlas

FMRI Analysis - NIH Presentation - 31 Mar 2004

All Misc Items ...

Links

Mike Beauchamp's AFNI Plugin Page

An evaluation of thresholding techniques in fMRI analysis

Error References

Command Not Found

All Error References ...

Glossary Definitions

FMRI

FDR

All Glossary Definitions ...

Tutorials

Classroom Setup

All Tutorials ...

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