 |
| Year 2008 |
| Leroy G, Miller T, Rosemblat G, Browne A. A Balanced Approach to Health Information Evaluation: A Vocabulary-based Naive Bayes Classifier and Readability Formulas . In Journal of the American Society for Information Science and Technology (JASIST), 59(9):1409-1419, 2008 |
| (Abstract) |
|
| Burgun A, Bodenreider O. Accessing and Integrating Data and Knowledge for Biomedical Research . Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):91-99 |
| (Abstract) (PDF)
(PMID: 18660883
) |
|
| Sharp M, Bodenreider O, Wacholder N. A Framework for Characterizing Drug Information Sources . AMIA Annu Symp Proc 2008:662-666 |
| (Abstract) (PMID: 18999182
) |
|
| Lu CJ, Humphrey SM, Browne AC. A Method for Verifying a Vector-Based Text Classification System . AMIA Annu Symp Proc. 2008 Nov 6 |
| (Abstract) |
|
| Kho AN, Dexter PR, Warvel JS, Belsito AW, Commiskey M, Wilson SJ, Hui SL, McDonald CJ. An Effective Computerized Reminder for Contact Isolation of Patients Colonized or Infected with Resistant Organisms . ijmedinf 77 (2008) 194-198 |
| (Abstract) (PMID: 17398145
) |
|
| Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP. An Ontology-driven Semantic Mash-up of Gene and Biological pathway information: Application to the domain of nicotine dependence . Journal of Biomedical Informatics 2008 |
| (Abstract) (PMID: 18395495
) |
|
| Bashyam V, Bennett DB, Browne AC, Taira RK. A Normalized Lexical Lookup Approach to Identifying UMLS Concepts in Free Text . Stud Health Technol Inform. 2007;129(Pt 1):545-9 |
| (Abstract) (PMID: 17911776
) |
|
| Ducut E, Liu F, Fontelo P. An Update on Uniform Resource Locator (URL) Decay in MEDLINE Abstracts and Measures for Its Mitigation . BMC Med Inform Decis Mak. 2008 Jun 11;8:23 |
| (Abstract) (PMID: 18547428
) |
|
| Xu X, Lee DJ, Antani S, Long LR. A Spine X-Ray Image Retrieval System Using Partial Shape Matching . IEEE Transactions on Information Technology in Biomedicine. January 2008;12(1):100-8 |
| (Abstract) (PMID: 18270042
) |
|
| Liu J, Subramanian K, Yoo T, Van Uitert R. A Stable Optic-flow Based Method for Tracking Colonoscopy Images . Proc. of MMBIA 2008: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, W. Wells, T. Syeda-Mahmood, B. Vemuri, and F. Wang, eds. (27-28 June 2008, Anchorage, AK) |
| (Abstract) |
|
| Mougin F, Bodenreider O. Auditing the NCI Thesaurus with Semantic Web Technologies . Auditing the NCI thesaurus with Semantic Web technologies |
| (Abstract) (PDF)
(PMID: 18999265
) |
|
| Bangalore AK, Divita G, Humphrey SM, Browne AC, Thorn KE. Automatic Categorization of Google Search Results for Medical Queries using JDI . Medinfo 2007: Proc. of the 11th World Congress on Health (Medical) Informatics |
| (Abstract) |
|
| Neveol A, Shooshan SE, Claveau V. Automatic Inference of Indexing Rules for MEDLINE . BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S11 |
| (Abstract) (PMID: 19025687
) |
|
| Mougin F, Burgun A, Bodenreider O, Chabalier J, Loreal O, Le Beux P. Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System . Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008). Berlin Heidelberg New York: Springer; 2008. p. 61-76 |
| (Abstract) (PDF)
|
|
| Fiszman M, Demner-Fushman D, Kilicoglu H, Rindflesch TC. Automatic Summarization of MEDLINE Citations for Evidence-based Medical Treatment: A Topic-oriented Evaluation . J Biomed Inform. 2008 Nov 5 |
| (Abstract) (PMID: 19022398
) |
|
| Xue Z, Long R, Antani SK, Thoma GR. A Web-accessible Content-based Cervicographic Image Retrieval System . Proc. SPIE Medical Imaging 2008. April 2008;6919:691907-1-9 |
| (Abstract) |
|
| Zhu Y, Huang X, Wang W, et al. Balancing the Role of Priors in Multi-Observer Segmentation Evaluation . J Sign Process Syst. New York, NY. May 2008 |
| (Abstract) |
|
| Kim H, Goryachev S, Rosemblat G, Browne A, Keselman A, Zeng-Treitler Q. Beyond Surface Characteristics: A New Health Text-specific Readability Measurement . AMIA Annu Symp Proc. 2007 Oct 11:418-22 |
| (Abstract) (PMID: 18693870
) |
|
| He Y, Kayaalp M. Biological Entity Recognition with Conditional Random Fields . AMIA Annu Symp Proc. 2008 Nov 6:293-7 |
| (Abstract) (PMID: 18999272
) |
|
| Bodenreider O. Biomedical Ontologies in Action: Role in Knowledge Management, Data Integration and Decision Support . Geissbuhler A, Kulikowski C, editors. IMIA Yearbook of Medical Informatics 2008. Methods Inf Med 2008;47(Suppl 1):67-79 |
| (Abstract) (PMID: 18660879
) |
|
| Antani S, Long LR, Thoma GR. Bridging the Gap: Enabling CBIR in Medical Applications . Proc. 21st IEEE International Symposium on Computer-Based Medical Systems (CBMS). Jyvaskyla, Finland. June 2008:4-6 |
| (Abstract) (PDF)
|
|
| Chang Y, Antani S, Lee DJ, et al. CBIR of Spine X-ray Images on Inter-vertebral Disc Space and Shape Profiles . Proc. 21st IEEE International Symposium on Computer-Based Medical Systems (CBMS). Jyvaskyla, Finland. June 2008:224-9. |
| (Abstract) (PDF)
|
|
| Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Combining Medical Domain Ontological Knowledge and Low-level Image Features for Multimedia Indexing . Proceedings of 2nd International Language Resources for Content-Based Image Retrieval Workshop (OntoImage 2008), part of 6th Language Resources and Evaluation Conference (LREC 2008). Marrakech, Morrocco. May 2008:CDROM Proceedings |
| (Abstract) (PDF)
|
|
| Demner-Fushman D, Antani SK, Simpson M, Thoma GR. Combining Medical Domain Ontological Knowledge and Low-level Image Features for Multimedia Indexing . Proc. 2nd Int'l Language Resources for Content-Based Image Retrieval Workshop (OntoImage 2008), part of 6th Language Resources and Evaluation Conference (LREC 2008). Marrakech, Morrocco. May 2008:CDROM Proceedings |
| (Abstract) |
|
| Bodenreider O. Comparing SNOMED CT and the NCI Thesaurus through Semantic Web Technologies. Proc. KR-MED 2008 |
| (Abstract) |
|
| Zeng K, Bodenreider O, Nelson SJ. Design and Implementation of a Personal Medication Record - MyMedicationList . AMIA Annu Symp Proc 2008:844-848 |
| (Abstract) (PDF)
(PMID: 18998962
) |
|
| Tom O, Fontelo P, Liu F. Do Computer-generated Summaries, 'The Bottom Line (TBL)' Accurately Reflect Published Journal Abstracts? . AMIA Annu Symp Proc. 2007 Oct 11:1135 |
| (Abstract) (PMID: 18694232
) |
|
| Ide NC, Loane RF, Demner-Fushman D. Essie: a concept-based search engine for structured biomedical text . J Am Med Inform Assoc. 2007 May-Jun;14(3):253-63. Epub 2007 Feb 28 |
| (Abstract) (PMID: 17329729
) |
|
| Jeronimo J, Wentzensen N, Long R, et al. Evaluation of Linear Array Human Papillomavirus Genotyping Using Automatic Optical Imaging Software . Journal of Clinical Microbiology. August 2008;46(8):2759-65 |
| (Abstract) (PMID: 18550741
) |
|
| Antani SK, Demner-Fushman D, Li J, Srinivasan BV, Thoma GR. Exploring use of Images in Clinical Articles for Decision Support in Evidence-Based Medicine . Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150Q(1-10) |
| (Abstract) (PDF)
|
|
| Fontelo P, Liu F, Zhang K, Ackerman M. Extending the Benefits of One Laptop per Child to Health . BMJ. 2008 Dec 1;337:a2459. doi: 10.1136/bmj.a2459 |
|
|
| Zou J, Le DX, Thoma GR. Extracting a Sparsely-Located Named Entity from Online HTML Medical Articles Using Support Vector Machine . Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:6815OP(1-10) |
| (Abstract) |
|
| Richesson RL, Fung KW, Krischer JP. Heterogeneous but 'Standard' Coding Systems for Adverse Events: Issues in Achieving Interoperability Between Apples and Oranges . Contemp Clin Trials. 2008 Sep;29(5):635-45. Epub 2008 Mar 5 |
| (Abstract) (PMID: 18406213
) |
|
| Kim IC, Le DX, Thoma GR. Hybrid Approach Combining Contextual and Statistical Information for Identifying MEDLINE Citation Terms . Proc. SPIE-IS/T Electronic Imaging. San Jose, CA. January 2008;6815:68150P(1-9) |
| (Abstract) (PDF)
|
|
| Fiszman M, Rosemblat G, AhlersCB, Rindflesch TC. Identifying Risk Factors for Metabolic Syndrome in Biomedical Text . AMIA Annu Symp Proc. 2007 Oct 11:249-53 |
| (Abstract) (PMID: 18693836
) |
|
| Bodenreider O. Issues in Mapping LOINC Laboratory Tests to SNOMED CT . AMIA Annu Symp Proc 2008:51-55 |
| (Abstract) (PMID: 18999311
) |
|
| Hurdle JF, Botkin J, Rindflesch TC. Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science . AMIA Annu Symp Proc. 2007 Oct 11:349-53 |
| (Abstract) (PMID: 18693856
) |
|
| Seetharaman S, Stanley RJ, De S, et al. Live Wire Segmentation Tool for Osteophyte Detection in Lumbar Spine X-Ray Images . Proc of 1st IEEE International Conference on Emerging Trends in Engineering and Technology (ICETET 2008). Nagpur, India. July 2008:715-20 |
| (Abstract) |
|
| Aronson AR, Mork JG, Shooshan SE, Demner-Fushman D. Methodology for Creating UMLS Content Views Appropriate for Biomedical Natural Language Processing . AMIA Annu Symp Proc. 2008 Nov 6:21-5 |
| (Abstract) (PMID: 18998883
) |
|
| Ducut E, Fontelo P. Mobile Devices in Health Education: Current Use and Practice . J Computing in Higher Education, Fall 2008 |
| (Abstract) |
|
| Zarin DA, Tse T. Moving Towards Transparency of Clinical trials . Science. 2008 Mar 7;319(5868):1340-2 |
| (Abstract) |
|
| Nelson SJ, Zeng K, Bodenreider O. MyMedicationList: Integrating Personal Medication Records with Resources . AMIA Annu Symp Proc 2008:1228 |
| (Abstract) (PDF)
(PMID: 18998987
) |
|
| Kim J, Le DX, Thoma GR. Naive Bayes Classifier for Extracting Bibliographic Information From Biomedical Online Articles . Proc. of the 2008 International Conference on Data Mining. Las Vegas, Nevada, USA. July 2008;II:373-8 |
| (Abstract) |
|
| Neveol A, Deserno TM, Darmoni SJ, Guld MO, Aronson AR. Natural Language Processing Versus Content-Based Image Analysis for Medical Document Retrieval . Journal of the American Society for Information Science and Technology 60(1):123-134, 2009 |
| (Abstract) |
|
| Bodenreider O. Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues. In: Bairoch A, Cohen-Boulakia S, Froidevaux C, editors. Proceedings of the Fifth International Workshop on Data Integration in the Life Sciences (DILS 2008); Berlin Heidelberg New York: Springer; 2008. p. 1-4 |
| (Abstract) (PDF)
|
|
| Deserno TM, Antani SK, Long LR. Ontology of Gaps in Content-Based Image Retrieval . Journal of Digital Imaging. February 2008 |
| (Abstract) (PMID: 18239964
) |
|
| Hensel BK, Fontelo P. Physician Attitudes Toward SMS/Text Messaging in Medicine . AMIA Annu Symp Proc. 2008 Nov 6:965 |
| (Abstract) (PMID: 18999193
) |
|
| Fontelo P, Liu F, Ducut EG. QR Code for Medical Information Uses . AMIA Annu Symp Proc. 2008 Nov 6:945 |
| (Abstract) (PMID: 18998785
) |
|
| Fung KW, McDonald CJ, Bray BE. RxTerms a Drug Interface Terminology Derived from RxNorm . AMIA Annu Symp Proc. 2008 Nov 6:227-31 |
| (Abstract) (PMID: 18998891
) |
|
| Kilicoglu H, Fiszman M, Rodriguez A, Shin D, Ripple AM, Rindflesch TC. Semantic MEDLINE: A Web Application for Managing the Results of PubMed Searches . Proc. Third Int'l Symposium for Semantic Mining in Biomedicine, 69-76 |
| (Abstract) |
|
| Fiszman M, Ortiz E, Bray BE, Rindflesch TC. Semantic Processing to Support Clinical Guideline Development . AMIA Annu Symp Proc. 2008 Nov 6:187-91 |
| (Abstract) (PMID: 18999127
) |
|
| Bodenreider O. Semantic Web for Translational Biomedicine: Two Pilot Experiments. Proc. MIA Summit on Translational Bioinformatics 2008:141 |
| (Abstract) (PDF)
|
|
| Stanley RJ, Antani S, Long LR, Thoma GR, Gupta K, Das M. Size-invariant Descriptors for Detecting Regions of Abnormal Growth in Cervical Vertebrae . Computerized Medical Imaging and Graphics 32 (2008) 44-52 |
| (Abstract) (PMID: 17949946
) |
|
| Rogers J, Bodenreider O. SNOMED CT: Browsing the Browsers . Proc of the Third International Conference on Knowledge Representation in Medicine (KR-MED 2008) 2008:30-36 |
| (Abstract) |
|
| Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. Standards, Security and Usability: Experience with MyMedicationList . Proc. AMIA Spring Congress 2008 |
| (PDF)
|
|
| Gavino AI, Tolentino PA, Bernal AB, Fontelo P, Marcelo Ade B. Telemedicine via Short Messaging System (SMS) in Rural Philippines . AMIA Annu Symp Proc. 2008 Nov 6:952 |
| (Abstract) (PMID: 18998858
) |
|
| Misra D, Seamans J, Thoma GR. Testing the Scalability of a DSpace-based Archive . Proc. IS&T Archiving 2008. Bern, Switzerland. June 2008:36-40 |
| (Abstract) (PDF)
|
|
| Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Marino-Ramirez. The Biological Function of Some Human Transcription Factor Binding Motifs Varies with Position Relative to the Transcription Start Site . Nucleic Acids Res 2008;36(8):2777-2786 |
| (Abstract) (PMID: 18367472
) |
|
| Ducut EG, Liu F, Fontelo P. The Cost of Being Wireless: A Usage Analysis of the PubMed for Handhelds Portal at the Point-of-Care . AMIA Annu Symp Proc. 2008 Nov 6:936 |
| (Abstract) (PMID: 18998780
) |
|
| Leroy G, Fiszman M, Rindflesch TC. The Impact of Directionality in Predications on Text Mining . Hawaii International Conference on System Sciences (HICSS-41), January 2008 |
| (Abstract) |
|
| Huang X, Wang W, Xue Z, Antani SK, et al. Tissue Classification using Cluster Features for Lesion Detection in Digital Cervigrams . Proc. SPIE Medical Imaging 2008. April 2008;6914:69141Z-1-8 |
| (Abstract) (PDF)
|
|
| Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Toward Automatic Recognition of High Quality Clinical Evidence. . AMIA Annu Symp Proc. 2008 Nov 6:368 |
| (Abstract) (PMID: 18998881
) |
|
| Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB. Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence . J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. Epub 2008 Oct 24 |
| (Abstract) (PMID: 18952929
) |
|
| Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC. Using the Literature-based Discovery Paradigm to Investigate Drug Mechanisms . AMIA Annu Symp Proc. 2007 Oct 11:6-10 |
| (Abstract) (PMID: 18693787
) |
|
| Peters L, Bodenreider O. Using the RxNorm Web Services API for Quality Assurance Purposes . AMIA Annu Symp Proc 2008:591-595 |
| (Abstract) (PMID: 18999038
) |
|
| Zhu Y, Huang X, Lopresti D, Long R, et al. Web-based Multi-observer Segmentation Evaluation Tool . Proc. 21st IEEE International Symposium on Computer-Based Medical Systems (CBMS). Jyvaskyla, Finland. June 2008:167-9 |
| (Abstract) |
|
