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| Year 2007 |
| Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, et al. Advancing Translational Research with the Semantic Web . BMC Bioinformatics 2007;8(Suppl 3):S2. |
| (Abstract) (PDF)
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| Simpson M, Ford G, Antani S, Demner-Fushman D, Thoma GR. A Lightweight Statistics Package for Interactive Publications . Poster at 20th NIH Research Festival (TECH-15), September 2007, National Institutes of Health |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O, Kantz N. Aligning Anatomical Ontologies: The Role of Complex Structural Rules . IIAS-Transactions on Systems Research and Cybernetics - Proceedings of the 18th International Conference on Systems Research, Informatics and Cybernetics (InterSymp 2006) 2006;VI(2):27-32. |
| (Abstract) (PDF)
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| Logan RA, Tse T. A Multidiscipline Conceptual Framework for Consumer Health Informatics . Medinfo 2007 12 (Pt2):1169-1173. |
| (Abstract) (PDF)
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| Marcelo AB, Fontelo P. An Evaluation of the Usability of Accessing MEDLINE over Short Messaging System . MEDINFO 2007:235-236 |
| (Abstract) (PDF)
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| Sahoo S, Bodenreider O, Zeng K, Sheth AP. An Experiment in Integrationg Large Biomedical Knowledge Resources with RDF: Application to Associating Genotype and Phenotype Information . Proceedings of the workshop on Health Care and Life Sciences Data Integration for the Semantic Web at the 16th International World Wide Web Conference (WWW2007) (electronic proceedings: http://www2007.org/workshops/paper_149.pdf) |
| (Abstract) (PDF)
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| Demner-Fushman D, Lin J. Answering Clinical Questions with Knowledge-based and Statistical Techniques. Computational Linguistics. 2007 Jan;33(1):63-103 |
| (Abstract) (PDF)
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| Misra D, Mao S, Rees J, Thoma GR. Archiving a Historic Medico-legal Collection: Automation and Workflow Customization . Proc. IS&T Archiving 2007. Arlington, Virginia, May 2007; 157-61. |
| (Abstract) (PDF)
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| Xu X, Lee DJ, Antani S, Long LR. A Spine X-ray Image Retrieval System using Partial Shape Matching. To appear in IEEE Transactions on Information Technology in Biomedicine. 2007 |
| (Abstract) (PDF)
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| Keselman A, Tse T, Crowell J et al. Assessing Consumer Health Vocabulary Familiarity: An Exploratory Study . J Med Internet Res. 2007 Mar 14;9(1):e5 |
| (Abstract) (PDF)
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| Tolentino HD, Matters MD, Walop W, Law B, Tong W, Liu F, Fontelo P, Kohl K, Payne DC. A UMLS-based Spell Checker for Natural Language Processing in Vaccine Safety . BMC Medical Informatics and Decision Making 2007, 7:3 |
| (Abstract) (PDF)
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| Demner-Fushman D, Antani S, Thoma GR. Automatically Finding Images for Clinical Decision Support . To appear in Proceedings of IEEE International Workshop on Data Mining in Medicine (DM-Med 2007). Omaha, NE, October 2007, pp. 139-144. |
| (Abstract) (PDF)
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| Lotenberg S, Gordon S, Long LR, Antani SK, Jeronimo J, Greenspan H. Automatic Evaluation of Uterine Cervix Segmentations . Proc. SPIE Medical Imaging 2007. Vol. 6515: 65151J-1-12. |
| (Abstract) (PDF)
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| Neveol A, Mork JG, Aronson R. Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific Document Representations. Proc BioNLP 2007 Workshop, 183-92. |
| (Abstract) (PDF)
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| Liu F, Fontelo P, Ackerman M. BabelMeSH2 and PICO Linguist2: Combined Language Search for MEDLINE/PubMed . AMIA Annu Symp Proc; 2007;1036 |
| (Abstract) (PDF)
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| Srinivasan Y, Nutter BS, Mitra SD, Yang S, Phillips B, Long LR. Challenges in Automated Detection of Cervical Intraepithelial Neoplasia . Proc. SPIE Medical Imaging 2007. Vol. 6514: 65140F-1-11. |
| (Abstract) (PDF)
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| Logan RA. Clinical, Classroom or Personal Education: Attitudes About Health Literacy . JMLA 95:2 (April 2007): 127-137. |
| (Abstract) (PDF)
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| Lussier YA, Bodenreider O. Clinical Ontologies for Discovery Applications . In: Baker CJO, Cheung K-H, editors. Semantic Web: Revolutionizing knowledge discovery in the life sciences. New York: Springer; 2007. p. 101-119. |
| (Abstract) (PDF)
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| Marino-Ramirez L, Bodenreider O, Kantz N, Jordan IK. Co-evolutionary Rates of Functionally Related Yeast Genes . Evolutionary Bioinformatics Online 2006;2:295-300. |
| (Abstract) (PDF)
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| Fung KW, Bodenreider O, Aronson AR, Hole WT, Srinivasan S. Combining Lexical and Semantic Methods of Inter-terminology Mapping Using the UMLS . Medinfo 2007:605-609. |
| (Abstract) (PDF)
(PMID: 17911788
) |
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| Demner-Fushman D, Humphrey SM, Ide NC, Loane RF, et al. Combining Resources to Find Answers to Biomedical Questions . Proc TREC 2007, 205-14 |
| (Abstract) (PDF)
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| Mao S, Mansukhani P, Thoma GR. Combining Static Classifiers and Class Syntax Models for Logical Entity Recognition in Scanned Historical Documents . Proc. IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), Minneapolis, Minnesota, June 2007, pp. 1-8. |
| (Abstract) (PDF)
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| Xue Z, Antani SK, Long LR, Thoma GR. Comparative Performance Analysis of Cervix ROI Extraction and Specular Reflection Removal Algorithms for Uterine Cervix Image Analysis . Proc. SPIE Medical Imaging 2007. Vol. 6512: 65124I-1-9. |
| (Abstract) (PDF)
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| Zheng S, Mork P, Bodenreider O, Bernstein PA. Comparing Two Approaches for Aligning Representations of Anatomy . Artificial Intelligence in Medicine 2007;39(3):227-236. |
| (Abstract) (PDF)
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| Jung B, Lee S, Fontelo P, Liu F, Kim S. Construction of Korean Version PICO Linguist and BabelMeSH . Korean Society of Medical Informatics (KOSMI) Fall Congress Proceedings 2007 |
| (Abstract) (PDF)
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| Bennett A, Liu J, Van Ryk D, Bliss D, Arthos J, Henderson RM, Subramaniam S. Cryoelectron Tomographic Analysis of an HIV-neutralizing Protein and Its Complex with Native Viral gp120 . J Biol Chem. 2007 Sep 21;282(38):27754-9. Epub 2007 Jun 28. |
| (Abstract) (PDF)
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| Tom O, Fontelo P, Liu F. Do Computer-generated Summaries, 'The Bottom Line (TBL)' Accurately Reflect Published Journal Abstracts? . AMIA Annu Symp Proc; 2007;1135 |
| (Abstract) (PDF)
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| Ide NC, Loane RF, Demner-Fushman D. Essie: A Concept-based Search Engine for Structured BiomedicalText . J Am Med Inform Assoc 2007;14(3):253-263. |
| (Abstract) (PDF)
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| Leon SA, Fontelo P, Green L, Ackerman M, Liu F. Evidence-based Medicine Among Internal Medicine Residents in a Community Hospital Program Using Smart Phones . BMC Medical Informatics and Decision Making 2007, 7:5 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. Experience in Aligning Anatomical Ontologies . International Journal on Semantic Web and Information Systems 2007;3(2):1-26. |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O. Experience in Integrating Large RDF-based Biomedical Knowledge Resources with Oracle. Proceedings of the 8th International Oracle Life Sciences User Group Meeting 2007:(electronic proceedings: http://www.olsug.org/wiki/images/d/d1/Kelly_Zheng.pdf) |
| (Abstract) (PDF)
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| Deserno TM, Antani SK, Long LR. Exploring Access to Scientific Literature Using Content-Based Image Retrieval . Proc. SPIE Medical Imaging 2007. Vol. 6516: 65160L-1-8. |
| (Abstract) (PDF)
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| Ahlers C, Fiszman M, Demner-Fushman D, Lang F, Rindflesch TC. Extracting Semantic Predications from MEDLINE Citations for Pharmacogenomics. Pacific Symposium on Biocomputing 2007 12:209-220 |
| (Abstract) (PDF)
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| Rosemblat G, Graham L, Tse T. Extractive Summarization in Clinical Trials Protocol Summaries: A Case Study . In: Proceedings, 3rd Indian International Conference on Artificial Intelligence (IICAI-2007), pp. 1824-1837 |
| (Abstract) (PDF)
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| Neveol A, Shooshan SE, Mork JG, Aronson AR. Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading Attachment for a MEDLINE Indexing Tool . AMIA Annu Symp Proc. 2007;:553-7 |
| (Abstract) (PDF)
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| Sahoo SS, Zeng K, Bodenreider O, Sheth A. From 'Glycosyltransferase' to 'Congenital Muscular Dystrophy': Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology . MEDINFO 2007:1260-1264 |
| (Abstract) (PDF)
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| Aronson AR, Bodenreider O, Demner-Fushman D, Fung KW, Lee VK, Mork JG, Neveol A, Peters L, Rogers WJ. From Indexing the Biomedical Literature to Coding Clinical Text: Experience with MTI and Machine Learning Approaches . Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 105-112, Prague, Czech Republic. |
| (Abstract) (PDF)
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| Deserno TM, Antani SK, Long LR. Gaps in Content-Based Image Retrieval . Proc. SPIE Medical Imaging 2007. Vol. 6516: 65160J-1-11. |
| (Abstract) (PDF)
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| Antani SK, Deserno TM, Leon S, Long LR, Thoma GR. Geographically Distributed Complementary Content-Based Image Retrieval Systems for Biomedical Image Informatics . MEDINFO August 2007, pp. 493:7 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. Hybrid Alignment Strategy for Anatomical Ontologies Results of the 2007 Ontology Alignment Contest . Proc. OAEI 2007:139-149. |
| (Abstract) (PDF)
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| Srinivasan B, Antani S, Demner-Fushman D, Thoma GR. Identification and Segmentation of Multi-Panel Images in Biomedical Journal Articles . Poster at 20th NIH Research Festival (BIOINFO-1), September 2007, National Institutes of Health |
| (Abstract) (PDF)
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| Kim IC, Le DX, Thoma GR. Identification of 'comment-on sentences' in Online Biomedical Documents Using Support Vector Machines. Proc. SPIE conference on Document Recognition and Retrieval, vol. 6500, pp.65000O-1-65000O-8, San Jose, CA, January 2007 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. Identifying Mismatches in Alignments of Large Anatomical Ontologies . Proc AMIA Annu Symp; 2007:851-855 |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O. Integrating the UMLS into an RDF-Based Biomedical Knowledge Repository . Proc AMIA Annu Symp; 2007:1170 |
| (Abstract) (PDF)
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| Antani SK, Deserno TM, Long LR, Guld MO, Neve L, Thoma GR. Interfacing Global and Local CBIR Systems for Medical Image Retrieval . Proc. Workshop on Medical Imaging Research (Bildverarbeitung fur die Medizin). March 2007; 166-71. |
| (Abstract) (PDF)
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| Jeronimo J, Massad S, Castle PE, Schiffman M, NIH/ASCCP Research Group. Inter-observer Agreement in the Evaluation of Digitized Cervical Images . American Journal of Obstetrics and Gynecology. Vol. 197, Issue 1, July 2007 |
| (Abstract) |
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| Fiszman M, Demner-Fushman D, Lang FM, Goetz P, Rindflesch TC. Interpreting Comparative Constructons in Biomedical Text. Proc. 2007 Workshop on Biomedical Natural Language Processing (BioNL'07), June 2007, pp. 137-144, Prague, Czech Republic. |
| (Abstract) (PDF)
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| Xue Z, Antani S, Long LR, Jeronimo J, Thoma GR. Investigating CBIR Techniques for Cervicographic Images . To appear in Proceedings of the 2007 Annual Symposium of the American Medical Information Association (AMIA 2007), Chicago, November 2007, pp. 826-830 |
| (Abstract) (PDF)
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| Bodenreider O, Smith B, Kumar A, Burgun A. Investigating Subsumption in SNOMED CT: An Exploration into Large Description Logic-based Biomedical Terminologies . Artificial Intelligence in Medicine 2007;39(3):183-195. |
| (Abstract) (PDF)
(PMID: 17241777
) |
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| Burgun A, Bodenreider O. Issues in Integrating Epidemiology and Research Information in Oncology: Experience with ICD-O3 and the NCI Thesaurus . Proc AMIA Annu Symp; 2007:pp 85-89. |
| (Abstract) (PDF)
(PMID: 18693803
) |
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| Zarin DA, Ide NC, Tse T, Harlan WR, West JC, Lindberg DAB. Issues in the Registration of Clinical Trials . JAMA 2007:297(19):2112-2120. |
| (Abstract) (PDF)
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| Gallagher ME. Keeping the Promises Associated with Your Digital Assets: Is it Possible?. In: Archiving 2007 Final Program and Proceedings, pp.146-149, 2007. |
| (Abstract) (PDF)
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| Sneiderman CA, Demner-Fushman D, Fiszman M, Ide NC, Rindflesch TC. Knowledge-Based Methods to Help Clinicians Find Answers in MEDLINE . 2007 Nov-Dec;14(6):772-80. Epub 2007 Aug 21 |
| (Abstract) (PDF)
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| Zhang S, Bodenreider O. Lessons Learned from Cross-Validating Alignments Between Large Anatomical Ontologies . MEDINFO 2007:822-826. |
| (Abstract) (PDF)
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| Li J, Demner-Fushman D, Thoma GR. Localizing Text and Symbols in Images from Biomedical Journal Articles . Poster at 20th NIH Research Festival (BIOINFO-6), September 2007, National Institutes of Health |
| (Abstract) (PDF)
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| Leon SA, Fontelo P. MedlinePlus en Espaniol and Spanish-Speakers . AMIA Annu Symp Proc; 2007;1028 |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Muin M, Ducut E, Ackerman A, Paalan-Vasquez F. MMSPix - A Multimedia Messaging Service (MMS) Medical Images Weblog . AMIA Annu Symp Proc; 2007;956 |
| (Abstract) (PDF)
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| Neveol A, Shooshan SE, Humphrey SM, Rindflesch TC, Aronson AR. Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature. Pacific Symposium on Biocomputing 2007 12:293-303 |
| (Abstract) (PDF)
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| Zweigenbaum P, Demner-Fushman D, Yu H, Cohen KB. New Frontiers in Biomedical Text Mining. Pacific Symposium on Biocomputing 12:205-208(2007) |
| (Abstract) (PDF)
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| Ackerman MJ. Next Generation Networking: Distributed Multimedia Information for Healthcare . Multimed. Tools Appl. 2007, 33:5-11. |
| (Abstract) (PDF)
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| Bodenreider O, Burgun A. Oncologic Pathology in Biomedical Terminologies: Challenges for Data Integration . Proc. of the APIII conference on "Anatomic Pathology Informatics and Imaging Support for Translational Medicine", Pittsburgh, Pennsylvania, September 9-12, 2007 2007:Abstract 342. |
| (Abstract) (PDF)
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| Zou J, Le DX, Thoma GR. Online Medical Journal Article Layout Analysis . Proc. SPIE-IS&T Electronic Imaging 2007, SPIE Vol. 6500: 65000V (1-12). |
| (Abstract) (PDF)
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| Walker FL, Gallagher ME, Thoma GR. PDF File Migration to PDF/A: Technical Considerations . Proc. IS&T Archiving 2007. Arlington, Virginia, May 2007; 6-11. |
| (Abstract) (PDF)
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| Locatis C. Performance, Instruction, and Technology in Health Care Education . In R. Reiser and J. Dempsey (Eds.) Trends and Issues in Instructional Design and Technology, (2nd Ed.) Merrill Prentice Hall: Upper Saddle River, NJ, 2007. |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Leon S, Anne A, Ackerman M. PICO Linguist and BabelMeSH: Development and Partial Evaluation of Evidence-based Multilanguage Search Tools for MEDLINE/PubMed . MEDINFO 2007, K. Kuhn et al. (Eds.) |
| (Abstract) (PDF)
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| Fontelo P, Liu F, Ackerman M. Potential Applications of RFID Technology in Medicine . Telemedicine and e-Health. Apr 2007, Vol. 13, No. 2: 176-177 |
| (Abstract) (PDF)
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| Zarin DA, Keselman A. Registering a Clinical Trial in ClinicalTrials.gov . Chest 2007;131;909-912; Prepublished online February 15, 2007; DOI10.1378/chest.06-2450 |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O, Kilbourne J, Nelson SJ. RxNav: An Integrated View on Drug Information . Proc AMIA Annu Symp; 2007:1202 |
| (Abstract) (PDF)
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| Zeng K, Bodenreider O, Kilbourne J, Nelson S. RxNav: Towards an Integrated View on Drug Information . MEDINFO 2007:386. |
| (Abstract) (PDF)
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| Drazen JM, Zarin DA. Salvation by Registration. N Engl J Med 356;2 |
| (Abstract) (PDF)
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| Tolentino H, Kamadjeu R, Fontelo P, Liu F et al.. Scanning the Emerging Infectious Diseases Horizon - Visualizing ProMED Emails Using EpiSPIDER . Advances in Disease Surveillance 2007;2:169 |
| (Abstract) (PDF)
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| Lin J, Demner-Fushman D. Semantic Clustering of Answers to Clinical Questions . To appear in Proceedings of the 2007 Annual Symposium of the American Medical Information Association (AMIA 2007), Chicago, November 2007, pp. 458-462 |
| (Abstract) (PDF)
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| Chen S, Mao S, Thoma GR. Simultaneous Layout Style and Logical Entity Recognition in a Heterogeneous Collection of Documents. Proceedings of 9th Int. Conf. on Document Analysis and Recognition (ICDAR2007). Curitiba, Brazil; September 2007, pp. 118-22 |
| (Abstract) (PDF)
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| Conran R, Fontelo P, Liu F, Fontelo M, White E. Slide2Go: A Virtual Slide Collection for Pathology Education . AMIA Annu Symp Proc; 2007;918 |
| (Abstract) (PDF)
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| Hsu W, Long LR, Antani SK. SPIRS: A Framework for Content-based Image Retrieval from Large Biomedical Databases . Proc. of MEDINFO August 2007. K. Kuhn etal. (Eds.). 188:92(2007) |
| (Abstract) (PDF)
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| Zou J, Le DX, Thoma GR. Structure and Content Analysis for HTML Medical Articles: A Hidden Markov Model Approach . Proc August 2007 ACM Symposium on Document Engineering. pp. 199-201. |
| (Abstract) (PDF)
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| Muin M, Fontelo P. Technical Development of PubMed Interact: an Improved Interface for MEDLINE/PubMed Searches . BMC Medical Informatics and Decision Making 2006, 6:36. |
| (Abstract) (PDF)
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| Zeng QT, Tse T, Divita G et al. Term Identification Methods for Consumer Health Vocabulary Development . J Med Internet Res. 2007 Feb 28;9(1):e4 |
| (Abstract) (PDF)
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| Rosemblat G, Logan R. The Consumers' Perspective: Text Features and Readability of Consumer Health Text . Mednet 2007: Germany. 12 Oct 2007. |
| (Abstract) |
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| Ruch P, Geissbuhler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A, Aronson AR. Using Discourse Analysis to Improve Text Categorization in MEDLINE . Medinfo 2007:710-715. |
| (Abstract) (PDF)
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| Hauser SE, Demner-Fushman D, Jacobs JL, Humphrey SM, Ford G, Thoma GR. Using Wireless Handheld Computers to Seek Information at the Point of Care: An Evaluation by Clinicians . J Am Med Inform Assoc 2007;14:807-814. DOI 10.1197/jamia.M2424. |
| (Abstract) (PDF)
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| Schardt C, Adams MB, Owens T, Jeitz S, Fontelo P. Utilization of the PICO Framework to Improve Searching PubMed for Clinical Questions . BMC Med Inform Decis Mak. 2007 Jun 15;7:16. |
| (Abstract) (PDF)
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| Jeronimo J, Massad LS, Schiffman M for the NIH-ASCCP Research Group. Visual Appearance of the Uterine Cervix: Correlation with Human Papillomavirus Detection and Type . Am J Obstet Gynecol 2007; 197:47.e1-47.e8. |
| (Abstract) (PDF)
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| Zhu Y, Long LR, Antani S, Xue Z, Thoma GR. Web-based STAPLE for Quality Estimation of Multiple image Segmentations . Poster at 20th NIH Research Festival (IMAG-12), September 2007, National Institutes of Health |
| (Abstract) (PDF)
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| Locatis C. Why Media Matter: Media Effectiveness from a Performance Perspective . Performance Improvement Quarterly, 20(1), 9-22. |
| (Abstract) (PDF)
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