| | Commentaries An immune reaction may be necessary for cancer development Richmond T Prehn Theor Biol Med Model. 2006; 3: 6. Published online 2006 February 3. doi: 10.1186/1742-4682-3-6.PMCID: PMC1373614 Distinguishing between linear and exponential cell growth during the division cycle: Single-cell studies, cell-culture studies, and the object of cell-cycle research Stephen Cooper Theor Biol Med Model. 2006; 3: 10. Published online 2006 February 23. doi: 10.1186/1742-4682-3-10.PMCID: PMC1402260 Cancer initiation and progression: an unsimplifiable complexity Fabio Grizzi, Antonio Di Ieva, Carlo Russo, Eldo E Frezza, Everardo Cobos, Pier Carlo Muzzio, and Maurizio Chiriva-Internati Theor Biol Med Model. 2006; 3: 37. Published online 2006 October 17. doi: 10.1186/1742-4682-3-37.PMCID: PMC1621057 Research Common angiotensin receptor blockers may directly modulate the immune system via VDR, PPAR and CCR2b Trevor G Marshall, Robert E Lee, and Frances E Marshall Theor Biol Med Model. 2006; 3: 1. Published online 2006 January 10. doi: 10.1186/1742-4682-3-1.PMCID: PMC1360063 Memory in astrocytes: a hypothesis Robert M Caudle Theor Biol Med Model. 2006; 3: 2. Published online 2006 January 18. doi: 10.1186/1742-4682-3-2.PMCID: PMC1360660 Developing a realistic sexual network model of chlamydia transmission in Britain Katherine ME Turner, Elisabeth J Adams, Nigel Gay, Azra C Ghani, Catherine Mercer, and W John Edmunds Theor Biol Med Model. 2006; 3: 3. Published online 2006 January 20. doi: 10.1186/1742-4682-3-3.PMCID: PMC1388195 Identification of metabolic system parameters using global optimization methods Pradeep K Polisetty, Eberhard O Voit, and Edward P Gatzke Theor Biol Med Model. 2006; 3: 4. Published online 2006 January 27. doi: 10.1186/1742-4682-3-4.PMCID: PMC1413512 A stochastic model of oncogene expression and the relevance of this model to cancer therapy Francis D Alfano Theor Biol Med Model. 2006; 3: 5. Published online 2006 January 31. doi: 10.1186/1742-4682-3-5.PMCID: PMC1373613 A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies Benjamin Ribba, Thierry Colin, and Santiago Schnell Theor Biol Med Model. 2006; 3: 7. Published online 2006 February 10. doi: 10.1186/1742-4682-3-7.PMCID: PMC1388194 Sepsis progression and outcome: a dynamical model Sergey M Zuev, Stephen F Kingsmore, and Damian DG Gessler Theor Biol Med Model. 2006; 3: 8. Published online 2006 February 15. doi: 10.1186/1742-4682-3-8.PMCID: PMC1420276 Computer simulation analysis of normal and abnormal development of the mammalian diaphragm Jason C Fisher and Lawrence Bodenstein Theor Biol Med Model. 2006; 3: 9. Published online 2006 February 17. doi: 10.1186/1742-4682-3-9.PMCID: PMC1434728 Number of active transcription factor binding sites is essential for the Hes7 oscillator Stefan Zeiser, H Volkmar Liebscher, Hendrik Tiedemann, Isabel Rubio-Aliaga, Gerhard KH Przemeck, Martin Hrabé de Angelis, and Gerhard Winkler Theor Biol Med Model. 2006; 3: 11. Published online 2006 February 23. doi: 10.1186/1742-4682-3-11.PMCID: PMC1402261 A model for generating circadian rhythm by coupling ultradian oscillators Verner Paetkau, Roderick Edwards, and Reinhard Illner Theor Biol Med Model. 2006; 3: 12. Published online 2006 February 23. doi: 10.1186/1742-4682-3-12.PMCID: PMC1402262 A method for the generation of standardized qualitative dynamical systems of regulatory networks Luis Mendoza and Ioannis Xenarios Theor Biol Med Model. 2006; 3: 13. Published online 2006 March 16. doi: 10.1186/1742-4682-3-13.PMCID: PMC1440308 Effect of transverse gap-junction channels on transverse propagation in an enlarged PSpice model of cardiac muscle Lakshminarayanan Ramasamy and Nicholas Sperelakis Theor Biol Med Model. 2006; 3: 14. Published online 2006 March 16. doi: 10.1186/1742-4682-3-14.PMCID: PMC1440307 Amino acid size, charge, hydropathy indices and matrices for protein structure analysis JC Biro Theor Biol Med Model. 2006; 3: 15. Published online 2006 March 22. doi: 10.1186/1742-4682-3-15.PMCID: PMC1450267 The time-profile of cell growth in fission yeast: model selection criteria favoring bilinear models over exponential ones Peter Buchwald and Akos Sveiczer Theor Biol Med Model. 2006; 3: 16. Published online 2006 March 27. doi: 10.1186/1742-4682-3-16.PMCID: PMC1444923 Binary gene induction and protein expression in individual cells Qiang Zhang, Melvin E Andersen, and Rory B Conolly Theor Biol Med Model. 2006; 3: 18. Published online 2006 April 5. doi: 10.1186/1742-4682-3-18.PMCID: PMC1488830 A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data Wenhong Fan, Najma Khalid, Andrew R Hallahan, James M Olson, and Lue Ping Zhao Theor Biol Med Model. 2006; 3: 19. Published online 2006 April 7. doi: 10.1186/1742-4682-3-19.PMCID: PMC1502129 Explaining individual variation in patterns of mass loss in breeding birds Sean A Rands, Innes C Cuthill, and Alasdair I Houston Theor Biol Med Model. 2006; 3: 20. Published online 2006 May 16. doi: 10.1186/1742-4682-3-20.PMCID: PMC1481530 Stochastic modeling of oligodendrocyte generation in cell culture: model validation with time-lapse data Ollivier Hyrien, Ibro Ambeskovic, Margot Mayer-Proschel, Mark Noble, and Andrei Yakovlev Theor Biol Med Model. 2006; 3: 21. Published online 2006 May 17. doi: 10.1186/1742-4682-3-21.PMCID: PMC1481529 Free radical theory of autoimmunity Subburaj Kannan Theor Biol Med Model. 2006; 3: 22. Published online 2006 June 7. doi: 10.1186/1742-4682-3-22.PMCID: PMC1508139 A simplified method for power-law modelling of metabolic pathways from time-course data and steady-state flux profiles Tomoya Kitayama, Ayako Kinoshita, Masahiro Sugimoto, Yoichi Nakayama, and Masaru Tomita Theor Biol Med Model. 2006; 3: 24. Published online 2006 July 17. doi: 10.1186/1742-4682-3-24.PMCID: PMC1550393 Parameter estimation in biochemical systems models with alternating regression I-Chun Chou, Harald Martens, and Eberhard O Voit Theor Biol Med Model. 2006; 3: 25. Published online 2006 July 19. doi: 10.1186/1742-4682-3-25.PMCID: PMC1586003 Redox-mediated bypass of restriction point via skipping of G1pm Arnold Hoffman, James J Greene, Lee M Spetner, and Michael Burke Theor Biol Med Model. 2006; 3: 26. Published online 2006 July 25. doi: 10.1186/1742-4682-3-26.PMCID: PMC1557840 Kinetic modeling of tricarboxylic acid cycle and glyoxylate bypass in Mycobacterium tuberculosis, and its application to assessment of drug targets Vivek Kumar Singh and Indira Ghosh Theor Biol Med Model. 2006; 3: 27. Published online 2006 August 3. doi: 10.1186/1742-4682-3-27.PMCID: PMC1563452 Indications that "codon boundaries" are physico-chemically defined and that protein-folding information is contained in the redundant exon bases Jan Charles Biro Theor Biol Med Model. 2006; 3: 28. Published online 2006 August 7. doi: 10.1186/1742-4682-3-28.PMCID: PMC1560374 Propagation velocity profile in a cross-section of a cardiac muscle bundle from PSpice simulation Nicholas Sperelakis and Lakshminarayanan Ramasamy Theor Biol Med Model. 2006; 3: 29. Published online 2006 August 15. doi: 10.1186/1742-4682-3-29.PMCID: PMC1578564 CapZ-lipid membrane interactions: a computer analysis James Smith, Gerold Diez, Anna H Klemm, Vitali Schewkunow, and Wolfgang H Goldmann Theor Biol Med Model. 2006; 3: 30. Published online 2006 August 16. doi: 10.1186/1742-4682-3-30.PMCID: PMC1564000 Pulsatile blood flow, shear force, energy dissipation and Murray's Law Page R Painter, Patrik Edén, and Hans-Uno Bengtsson Theor Biol Med Model. 2006; 3: 31. Published online 2006 August 21. doi: 10.1186/1742-4682-3-31.PMCID: PMC1590016 Moderate exercise and chronic stress produce counteractive effects on different areas of the brain by acting through various neurotransmitter receptor subtypes: A hypothesis Suptendra N Sarbadhikari and Asit K Saha Theor Biol Med Model. 2006; 3: 33. Published online 2006 September 23. doi: 10.1186/1742-4682-3-33.PMCID: PMC1592480 Predicting iron and folate deficiency anaemias from standard blood testing: the mechanism and implications for clinical medicine and public health in developing countries Alan E Dugdale Theor Biol Med Model. 2006; 3: 34. Published online 2006 October 9. doi: 10.1186/1742-4682-3-34.PMCID: PMC1626451 A model of gene-gene and gene-environment interactions and its implications for targeting environmental interventions by genotype Helen M Wallace Theor Biol Med Model. 2006; 3: 35. Published online 2006 October 9. doi: 10.1186/1742-4682-3-35.PMCID: PMC1629012 Identification of biomolecule mass transport and binding rate parameters in living cells by inverse modeling Kouroush Sadegh Zadeh, Hubert J Montas, and Adel Shirmohammadi Theor Biol Med Model. 2006; 3: 36. Published online 2006 October 11. doi: 10.1186/1742-4682-3-36.PMCID: PMC1635038 Key transmission parameters of an institutional outbreak during the 1918 influenza pandemic estimated by mathematical modelling Gabriel Sertsou, Nick Wilson, Michael Baker, Peter Nelson, and Mick G Roberts Theor Biol Med Model. 2006; 3: 38. Published online 2006 November 30. doi: 10.1186/1742-4682-3-38.PMCID: PMC1693548 The mechanism for stochastic resonance enhancement of mammalian auditory information processing Dawei Hong, Joseph V Martin, and William M Saidel Theor Biol Med Model. 2006; 3: 39. Published online 2006 December 1. doi: 10.1186/1742-4682-3-39.PMCID: PMC1698913 In silico experimentation with a model of hepatic mitochondrial folate metabolism H Frederik Nijhout, Michael C Reed, Shi-Ling Lam, Barry Shane, Jesse F Gregory, III, and Cornelia M Ulrich Theor Biol Med Model. 2006; 3: 40. Published online 2006 December 6. doi: 10.1186/1742-4682-3-40.PMCID: PMC1713227 Bringing metabolic networks to life: convenience rate law and thermodynamic constraints Wolfram Liebermeister and Edda Klipp Theor Biol Med Model. 2006; 3: 41. Published online 2006 December 15. doi: 10.1186/1742-4682-3-41.PMCID: PMC1781438 Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data Wolfram Liebermeister and Edda Klipp Theor Biol Med Model. 2006; 3: 42. Published online 2006 December 15. doi: 10.1186/1742-4682-3-42.PMCID: PMC1781439 The biological sense of cancer: a hypothesis Raúl A Ruggiero and Oscar D Bustuoabad Theor Biol Med Model. 2006; 3: 43. Published online 2006 December 15. doi: 10.1186/1742-4682-3-43.PMCID: PMC1764731 Reviews Protein-lipid interactions: correlation of a predictive algorithm for lipid-binding sites with three-dimensional structural data David L Scott, Gerold Diez, and Wolfgang H Goldmann Theor Biol Med Model. 2006; 3: 17. Published online 2006 March 28. doi: 10.1186/1742-4682-3-17.PMCID: PMC1523333 The paradoxical effects of splenectomy on tumor growth Richmond T Prehn Theor Biol Med Model. 2006; 3: 23. Published online 2006 June 26. doi: 10.1186/1742-4682-3-23.PMCID: PMC1538594 Software An object simulation model for modeling hypothetical disease epidemics – EpiFlex Brian Hanley Theor Biol Med Model. 2006; 3: 32. Published online 2006 August 23. doi: 10.1186/1742-4682-3-32.PMCID: PMC1570461 |