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Volume 5(1);  February 2004
Research Articles
Identification and Analysis of Novel Tandem Repeats in the Cell Surface Proteins of Archaeal and Bacterial Genomes Using Computational Tools
S. Adindla, K. K. Inampudi, K. Guruprasad, and L. Guruprasad
Comp Funct Genomics. 2004 February; 5(1): 2–16. doi: 10.1002/cfg.358.
PMCID: PMC2447325
A Survey of Nucleotide Cyclases in Actinobacteria: Unique Domain Organization and Expansion of the Class III Cyclase Family in Mycobacterium tuberculosis
Avinash R. Shenoy, K. Sivakumar, A. Krupa, N. Srinivasan, and Sandhya S. Visweswariah
Comp Funct Genomics. 2004 February; 5(1): 17–38. doi: 10.1002/cfg.349.
PMCID: PMC2447327
ArraySolver: An Algorithm for Colour-Coded Graphical Display and Wilcoxon Signed-Rank Statistics for Comparing Microarray Gene Expression Data
Haseeb Ahmad Khan
Comp Funct Genomics. 2004 February; 5(1): 39–47. doi: 10.1002/cfg.369.
PMCID: PMC2447319
Modelling for Integration With Proteins, Networks and Signals
Ray Paton
Comp Funct Genomics. 2004 February; 5(1): 50–51. doi: 10.1002/cfg.361.
PMCID: PMC2447328
Enabling Proteomics: The Need for an Extendable ‘Workbench’ for User-Configurable Solutions
Robert J. Beynon
Comp Funct Genomics. 2004 February; 5(1): 52–55. doi: 10.1002/cfg.372.
PMCID: PMC2447322
UTOPIA—User-Friendly Tools for Operating Informatics Applications
S. R. Pettifer, J. R. Sinnott, and T. K. Attwood
Comp Funct Genomics. 2004 February; 5(1): 56–60. doi: 10.1002/cfg.359.
PMCID: PMC2447318
ProbSeq—A Fragmentation Model for Interpretation of Electrospray Tandem Mass Spectrometry Data
John Skilling, Richard Denny, Keith Richardson, Phillip Young, Thérèse McKenna, Iain Campuzano, and Mark Ritchie
Comp Funct Genomics. 2004 February; 5(1): 61–68. doi: 10.1002/cfg.370.
PMCID: PMC2447321
Signal Analysis on Strings for Immune-Type Pattern Recognition
Nikolaos D. Atreas, Costas Karanikas, and Persefoni Polychronidou
Comp Funct Genomics. 2004 February; 5(1): 69–74. doi: 10.1002/cfg.367.
PMCID: PMC2447330
MicroCore: Mapping Genome Expression to Cell Pathways and Networks
Manish Patel and Sylvia Nagl
Comp Funct Genomics. 2004 February; 5(1): 75–78. doi: 10.1002/cfg.362.
PMCID: PMC2447329
The Evolution of Protein Interaction Networks in Regulatory Proteins
Gregory D. Amoutzias, David L. Robertson, and Erich Bornberg-Bauer
Comp Funct Genomics. 2004 February; 5(1): 79–84. doi: 10.1002/cfg.365.
PMCID: PMC2447317
Computational Aspects of Protein Functionality
R. C. Paton and C.-H. Toh
Comp Funct Genomics. 2004 February; 5(1): 85–90. doi: 10.1002/cfg.360.
PMCID: PMC2447316
A Formal Language-Based Approach in Biology
Marian Gheorghe and Victor Mitrana
Comp Funct Genomics. 2004 February; 5(1): 91–94. doi: 10.1002/cfg.364.
PMCID: PMC2447320
Rewriting Systems and the Modelling of Biological Systems
Jean-Louis Giavitto, Grant Malcolm, and Olivier Michel
Comp Funct Genomics. 2004 February; 5(1): 95–99. doi: 10.1002/cfg.363.
PMCID: PMC2447326
Individual-Based Modelling of Bacterial Ecologies and Evolution
C. Vlachos, R. Gregory, R. C. Paton, J. R. Saunders, and Q. H. Wu
Comp Funct Genomics. 2004 February; 5(1): 100–104. doi: 10.1002/cfg.368.
PMCID: PMC2447324
Current Awareness on Comparative and Functional Genomics
Comp Funct Genomics. 2004 February; 5(1): 108–114. doi: 10.1002/cfg.350.
PMCID: PMC2447323
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