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Scientific Databases
Sorted by Database Name /type /format

Database Type Available formats Location on the Helix Systems Accessible via Last updated

Cambridge Structural Database
Crystal structure information for over 165,000 organic and organometallic compounds. More info at CCDC. 		3-D CSD /local/csd Quest 02 Apr 2008

(Updated every 3 months
Source:CCDC)


Chicken Genome
May 2006 assembly from WUSTL. 		Nuc MySQL NIH mirror of UCSC Genome Browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC Genome Browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC Genome Browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )


Cow Genome
Aug 2006 assembly from the Baylor Sequencing Center 		Nuc MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		24 Mar 2008

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		24 Mar 2008

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		24 Mar 2008

(Updated weekly
Source:UCSC )


Dog Genome
May 2005 assembly from the Broad Institute 		Nuc MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )


Drosophila
Drosophila sequences 		Nuc Blast /fdb/blastdb/drosoph.nt Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/drosoph.nt.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/drosoph.nt WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )

Prot Blast /fdb/blastdb/drosoph.aa Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/drosoph.aa.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/drosoph.aa WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )


Drosophila genome
April 2006 assembly 		Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC)


E.Coli
E.Coli sequences 		Nuc Blast /fdb/blastdb/ecoli.nt Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/ecoli.nt.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/ecoli.nt WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )

Blast /fdb/blastdb/ecoli.nt Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Prot Blast /fdb/blastdb/ecoli.aa Blast (Helix)
Blast (Biowulf)		 19 Mar 2006

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/ecoli.aa.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/ecoli.aa WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )


EST
EST division of Genbank 		Nuc EMBOSS /fdb/embossdb/est.new EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated bimonthly after Genbank release
Source:NCBI )


EST - human
Human sequences from the EST division of Genbank 		Nuc Blast /fdb/blastdb/est_human Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/est_human WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/est_human.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )


EST - mouse
Mouse sequences from the EST division of Genbank. 		Nuc Blast /fdb/blastdb/est_mouse Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/est_mouse WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/est_mouse.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )


EST - others
Non-human, non-mouse sequences from the EST division of Genbank 		Nuc Blast /fdb/blastdb/est_others Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )


Gb_New
All sequences added to Genbank since last major release 		Nuc EMBOSS /fdb/embossdb/gbnew.new EMBOSS web interface
& EMBOSS command-line		 27 Jan 2009

(Updated daily
Source:NCBI )


Genbank
The NIH Genetic Sequence Database, an annotated collection of all publicly available DNA sequences. More information at NCBI. 		Nuc EMBOSS /fdb/embossdb/genbank.new EMBOSS web interface
& EMBOSS command-line		 16 Dec 2008

(Updated bimonthly after Genbank release
Source:NCBI )


GenPept
GenPept is produced by parsing the corresponding GenBank release for translated coding regions of GenBank sequences. More information at NCI, Frederick 		Prot EMBOSS /fdb/embossdb/genpept.new EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated bimonthly after Genbank release
Source:NCIFCRF)


GP_New
All sequences added to GenPept since last major release 		Prot EMBOSS /fdb/embossdb/gpnew.new EMBOSS web interface
& EMBOSS command-line		 27 Jan 2009

(Updated daily
Source:NCIFCRF )


HTGs
High throughput genome sequences 		Nuc Blast /fdb/blastdb/htgs Blast (Helix)
Blast (Biowulf)		 27 Nov 2008

(Updated weekly
Source:NCBI )


Human Genome
Build 36, hg18 (April 2006) from the International Human Genome Consortium 		Nuc Blast /fdb/blastdb/hs_genome Blast (Helix)
Blast (Biowulf)		 01 May 2006

(Updated after new build release
Source:UCSC )

Fasta /fdb/genome/human-apr2006/ Fasta, BLAT. User programs. 01 May 2006

(Updated after new build release
Source:UCSC)

MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC )

WU-Blast /fdb/wublastdb/hs_genome WU-Blast 01 May 2006

(Updated weekly
Source:UCSC)

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC)


Human Genome Proteins
Build 36, hg18 (April 2006) from the International Human Genome Consortium 		Prot Fasta /fdb/fastadb/hs_genome.protein.fas Fasta, BLAT. User programs. 28 Apr 2006

(Updated after build release
Source:NCBI )

WU-Blast /fdb/wublastdb/hs_genome.protein WU-Blast 01 May 2006

(Updated after build release
Source:NCBI )

Blast /fdb/blastdb/hs_genome.protein Blast (Helix)
Blast (Biowulf)		 29 Mar 2008

(Updated after build release
Source:NCBI )


Human Genome RNA
Build 36, hg18 (April 2006) from the International Human Genome Consortium 		Nuc Fasta /fdb/fastadb/hs_genome.rna.fas Fasta, BLAT. User programs. 28 Apr 2006

(Updated after build release
Source:NCBI )

Blast /fdb/blastdb/hs_genome.rna Blast (Helix)
Blast (Biowulf)		 29 Mar 2008

(Updated after build release
Source:NCBI )

WU-Blast /fdb/wublastdb/hs_genome.rna WU-Blast 01 May 2006

(Updated after build release
Source:NCBI )


Mito
Mitochondrial sequences 		Nuc Blast /fdb/blastdb/mito.nt Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/mito.nt.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/mito.nt WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )

Prot Blast /fdb/blastdb/mito.aa Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/mito.aa.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/mito.aa WU-Blast 29 Oct 2008

(Updated weekly
Source:NCBI )


Mouse Genome
Build 37, mm9, Jul 2007 from the Mouse Genome Consortium 		Nuc Blast /fdb/blastdb/mouse_genome Blast (Helix)
Blast (Biowulf)		 25 Mar 2008

(Updated after new build release
Source:UCSC )

WU-Blast /fdb/wublastdb/mouse_genome WU-Blast 25 Mar 2008

(Updated after new build release
Source:UCSC )

Fasta /fdb/genome/mouse-mar2006/ Fasta, BLAT. User programs. 26 Mar 2008

(Updated after new build release
Source:UCSC )

MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		25 Nov 2008

(Updated weekly
Source:UCSC )


Mouse Genome Proteins
Build 37, mm9, Jul 2007 from the Mouse Genome Consortium 		Prot Blast /fdb/blastdb/mouse_genome.protein Blast (Helix)
Blast (Biowulf)		 26 Mar 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/mouse_genome.protein.fas Fasta, BLAT. User programs. 25 Mar 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/mouse_genome.protein WU-Blast 25 Mar 2008

(Updated weekly
Source:NCBI )


Mouse Genome RNA
Build 37, mm9, Jul 2007 from the Mouse Genome Consortium 		Nuc Blast /fdb/blastdb/mouse_genome.rna Blast (Helix)
Blast (Biowulf)		 26 Mar 2008

(Updated after release
Source:NCBI )

Fasta /fdb/fastadb/mouse_genome.rna.fas Fasta, BLAT. User programs. 25 Mar 2008

(Updated after release
Source:NCBI )

WU-Blast /fdb/wublastdb/mouse.rna WU-Blast 25 Mar 2008

(Updated after release
Source:NCBI )


MSDB
A nonredundant protein sequence database designed specifically for mass-spec applications. 		Prot Mascot biospec.nih.gov Mascot search engine 20 Jun 2008

(Updated weekly
Source:NCBI )


NCBI nr
NCBI's nonredundant Genbank CDS translations + PDB + SwissProt 		Prot Blast /fdb/blastdb/nr Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/nr.aa.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )

Mascot biospec.nih.gov Mascot search engine 15 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/nr WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )


NCBI nt
All GenBank+EMBL+DDBJ (but no EST, STS, GSS, HTG). No longer nonredundant. 		Nuc Blast /fdb/blastdb/nt Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/nt WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/nt.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )


NIH-Specific
A collection of NIH-specific databases requested by NIH Mascot users. 		Prot Mascot biospec.nih.gov Mascot search engine 05 Jan 2009

(Updated as requested
Source:NIH)


PFAM
A collection of multiple sequence alignments and hidden Markov models. More information at PFAM home page 		Families PFAM /fdb/fastadb/pfam HMMER (Biowulf, Helix) 04 Jan 2007

(Updated every 3 months
Source:PFAM )


Prints
Protein fingerprints, groups of conserved motifs used to characterize a protein family. 		Patterns EMBOSS used internally by Emboss EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated after new Prints release
Source:EBI)


Prosite
A database/dictionary of protein sites and patterns. More information at Expasy. 		Patterns EMBOSS used internally by Emboss EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated every 2 months
Source:Expasy )


Protein Data Bank
An archive of experimentally determined three-dimensional strtures of biological macromolecules. More information at the PDB. 		Nuc Blast /fdb/blastdb/pdbnt Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/pdb.nt.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/pdb.nt WU-Blast 15 Dec 2008

(Updated weeekly
Source:NCBI )

Prot Blast /fdb/blastdb/pdbaa Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/pdb.aa.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/pdb.aa WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )

3-D PDB /pdb/pdb Molecules R Us or direct access to coordinate files.
NIH users can NFS-mount the PDB databases on their own machines -- contact staff@helix.nih.gov for more info. 		30 Jan 2009

(Updated daily
Source:PDB )


Rat Genome
May 2006 build, rn4, from the Rat Genome Sequencing Consortium 		Nuc MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		29 Dec 2007

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		29 Dec 2007

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		29 Dec 2007

(Updated weekly
Source:UCSC )


REBASE
About restriction enzymes, recognition sequences, cleavage sites... More information at REBASE. 		Enzymes EMBOSS used internally by Emboss EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated every month
Source:REBASE )


Refseq Human Genomic
Refseq Human (NC_######) chromosome records with gap adjusted concatenated NT_ contigs 		Nuc Blast /fdb/blastdb/human_genomic Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/ref.human.genomic.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseq Human Proteins
A comprehensive, integrated, non-redundant set of sequences. More info at NCBI 		Prot Blast /fdb/blastdb/human.protein Blast (Helix)
Blast (Biowulf)		 15 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/ref.human.protein.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)

WU-Blast /fdb/wublastdb/ref.human.protein WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseq Human RNA
A comprehensive, integrated, non-redundant set of sequences. More info at NCBI 		Nuc Blast /fdb/blastdb/human.rna Blast (Helix)
Blast (Biowulf)		 15 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/ref.human.rna.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)

WU-Blast /fdb/wublastdb/ref.human.rna WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseq Mouse Proteins
A comprehensive, integrated, non-redundant set of sequences. More info at NCBI 		Prot Blast /fdb/blastdb/mouse.protein Blast (Helix)
Blast (Biowulf)		 15 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/ref.mouse.protein.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)

WU-Blast /fdb/wublastdb/ref.mouse.protein WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseq Mouse RNA
A comprehensive, integrated, non-redundant set of sequences. More info at NCBI 		Nuc Blast /fdb/blastdb/mouse.rna Blast (Helix)
Blast (Biowulf)		 15 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/ref.mouse.rna.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)

WU-Blast /fdb/wublastdb/ref.mouse.rna WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseq Other Genomic
RefSeq chromosome records (NC_######) for organisms other than human 		Nuc Blast /fdb/blastdb/other_genomic Blast (Helix)
Blast (Biowulf)		 03 Dec 2008

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/ref.other.genomic.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI)


Refseqaa
NCBI's comprehensive, integrated, non-redundant set of protein sequences for major research organisms. 		Prot EMBOSS /fdb/embossdb/refseqaa.new EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated weekly
Source:NCBI)


Refseqnt
NCBI's comprehensive, integrated, non-redundant set of sequences, including genomic DNA, transcript (RNA) for major research organisms. 		Nuc EMBOSS /fdb/embossdb/refseqnt.new EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated weekly
Source:NCBI)


Rhesus genome
Jan 2006 assembly from the Baylor Sequencing Center. 		Nuc MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		26 Aug 2008

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		26 Aug 2008

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		26 Aug 2008

(Updated weekly
Source:UCSC )


Sp_Trembl
SwissProt + Trembl (a computer-annotated supplement of SwissProt) 		Prot Mascot biospec.nih.gov Mascot search engine 25 Jan 2009

(Updated weekly
Source:Expasy )


SwissProt
A highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. More information at Expasy 		Prot Blast /fdb/blastdb/swissprot Blast (Helix)
Blast (Biowulf)		 04 Dec 2008

(Updated weekly
Source:NCBI)

Fasta /fdb/fastadb/swissprot.aa.fas Fasta, BLAT. User programs. 15 Dec 2008

(Updated weekly
Source:NCBI )

Mascot biospec.nih.gov Mascot search engine 25 Jan 2009

(Updated weekly
Source:Expasy )

WU-Blast /fdb/wublastdb/swissprot.aa WU-Blast 15 Dec 2008

(Updated weekly
Source:NCBI )


Transfac
Transcription factor database, most recent version from www.biobase.de. 		Info EMBOSS used internally by Emboss EMBOSS web interface
& EMBOSS command-line		 24 Nov 2008

(Updated with new Transfac release.
Source:Biobase )


UniProt
(Swissprot + Trembl) A highly-annotated, curated protein sequence database. Minimal redundancy and high level of integration with other databases. More information at Expasy 		Prot EMBOSS /fdb/embossdb/uniprot EMBOSS web interface
& EMBOSS command-line		 23 Jan 2009

(Updated weekly
Source:Uniprot)


UniVec Core
A non-redundant database of sequences commonly attached to cDNA or genomic DNA during the cloning process. Includes only oligonucleotides and vectors consisting of bacterial, phage, viral, yeast or synthetic sequences, but not vectors that include sequences of mammalian origin. 		Nuc Blast /fdb/blastdb/univec_core Blast (Helix)
Blast (Biowulf)		 28 Apr 2008

(Updated once
Source:NCBI)


Yeast
Yeast sequences 		Nuc Blast /fdb/blastdb/yeast.nt Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/yeast.nt.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/yeast.nt WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )

Prot Blast /fdb/blastdb/yeast.aa Blast (Helix)
Blast (Biowulf)		 25 Jul 2005

(Updated weekly
Source:NCBI )

Fasta /fdb/fastadb/yeast.aa.fas Fasta, BLAT. User programs. 25 Jul 2005

(Updated weekly
Source:NCBI )

WU-Blast /fdb/wublastdb/yeast.aa WU-Blast 10 Nov 2008

(Updated weekly
Source:NCBI )


Zebrafish genome
Mar 2006 assembly from the Sanger Center. 		Nuc MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Prot MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

Annotations MySQL NIH mirror of UCSC genome browser NIH mirror of UCSC Genome Browser
Also available for direct MySQL queries from the Biowulf cluster nodes. 		30 Dec 2007

(Updated weekly
Source:UCSC )

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