| | Other Issues: previous | next | latest | archiveComment The wisdom, and madness, of crowds Gregory A Petsko Genome Biol. 2008; 9(11): 112. Published online 2008 December 1. doi: 10.1186/gb-2008-9-11-112.PMCID: PMC2614482 Minireviews Network-based approaches for linking metabolism with environment Sarath Chandra Janga and M Madan Babu Genome Biol. 2008; 9(11): 239. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-239.PMCID: PMC2614483 Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis Robert P Zinzen and Eileen EM Furlong Genome Biol. 2008; 9(11): 240. Published online 2008 November 4. doi: 10.1186/gb-2008-9-11-240.PMCID: PMC2614484 Protein Family Review The Hedgehog protein family Thomas R Bürglin Genome Biol. 2008; 9(11): 241. Published online 2008 November 19. doi: 10.1186/gb-2008-9-11-241.PMCID: PMC2614485 Meeting Reports A new era for proteomics research? Mathias Uhlen Genome Biol. 2008; 9(11): 325. Published online 2008 November 4. doi: 10.1186/gb-2008-9-11-325.PMCID: PMC2614486 From sequence to structure to networks Nir Yosef and Lukas Käll Genome Biol. 2008; 9(11): 326. Published online 2008 November 4. doi: 10.1186/gb-2008-9-11-326.PMCID: PMC2614487 Bacterial networking Kathleen Marchal and Sigrid CJ De Keersmaecker Genome Biol. 2008; 9(11): 327. Published online 2008 November 12. doi: 10.1186/gb-2008-9-11-327.PMCID: PMC2614488 Method Whole genome transcriptome polymorphisms in Arabidopsis thaliana Xu Zhang, Jake K Byrnes, Thomas S Gal, Wen-Hsiung Li, and Justin O Borevitz Genome Biol. 2008; 9(11): R165. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-r165.PMCID: PMC2614497 Software ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets Patrick J Killion and Vishwanath R Iyer Genome Biol. 2008; 9(11): R159. Published online 2008 November 12. doi: 10.1186/gb-2008-9-11-r159.PMCID: PMC2614491 Correspondence Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection? Yasser Riazalhosseini and Jörg D Hoheisel Genome Biol. 2008; 9(11): 405. Published online 2008 November 26. doi: 10.1186/gb-2008-9-11-405.PMCID: PMC2614489 Research A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans Mircea Podar, Iain Anderson, Kira S Makarova, James G Elkins, Natalia Ivanova, Mark A Wall, Athanasios Lykidis, Kostantinos Mavromatis, Hui Sun, Matthew E Hudson, Wenqiong Chen, Cosmin Deciu, Don Hutchison, Jonathan R Eads, Abraham Anderson, Fillipe Fernandes, Ernest Szeto, Alla Lapidus, Nikos C Kyrpides, Milton H Saier, Jr, Paul M Richardson, Reinhard Rachel, Harald Huber, Jonathan A Eisen, Eugene V Koonin, Martin Keller, and Karl O Stetter Genome Biol. 2008; 9(11): R158. Published online 2008 November 10. doi: 10.1186/gb-2008-9-11-r158.PMCID: PMC2614490 Characterization of the differentially methylated region of the Impact gene that exhibits Glires-specific imprinting Kohji Okamura, Richard F Wintle, and Stephen W Scherer Genome Biol. 2008; 9(11): R160. Published online 2008 November 13. doi: 10.1186/gb-2008-9-11-r160.PMCID: PMC2614492 Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1 Jimmy H Saw, Bruce W Mountain, Lu Feng, Marina V Omelchenko, Shaobin Hou, Jennifer A Saito, Matthew B Stott, Dan Li, Guang Zhao, Junli Wu, Michael Y Galperin, Eugene V Koonin, Kira S Makarova, Yuri I Wolf, Daniel J Rigden, Peter F Dunfield, Lei Wang, and Maqsudul Alam Genome Biol. 2008; 9(11): R161. Published online 2008 November 17. doi: 10.1186/gb-2008-9-11-r161.PMCID: PMC2614493 Proteomics studies confirm the presence of alternative protein isoforms on a large scale Michael L Tress, Bernd Bodenmiller, Ruedi Aebersold, and Alfonso Valencia Genome Biol. 2008; 9(11): R162. Published online 2008 November 18. doi: 10.1186/gb-2008-9-11-r162.PMCID: PMC2614494 Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases Eri Fukuda, Katarzyna H Kaminska, Janusz M Bujnicki, and Ichizo Kobayashi Genome Biol. 2008; 9(11): R163. Published online 2008 November 21. doi: 10.1186/gb-2008-9-11-r163.PMCID: PMC2614495 Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata Gaëlle Lelandais, Véronique Tanty, Colette Geneix, Catherine Etchebest, Claude Jacq, and Frédéric Devaux Genome Biol. 2008; 9(11): R164. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-r164.PMCID: PMC2614496 Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip Shilpi Arora, Yipeng Wang, Zhenyu Jia, Saynur Vardar-Sengul, Ayla Munawar, Kutbuddin S Doctor, Michael Birrer, Michael McClelland, Eileen Adamson, and Dan Mercola Genome Biol. 2008; 9(11): R166. Published online 2008 November 25. doi: 10.1186/gb-2008-9-11-r166.PMCID: PMC2614498 Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment Anna Shevchenko, Assen Roguev, Daniel Schaft, Luke Buchanan, Bianca Habermann, Cagri Sakalar, Henrik Thomas, Nevan J Krogan, Andrej Shevchenko, and A Francis Stewart Genome Biol. 2008; 9(11): R167. Published online 2008 November 28. doi: 10.1186/gb-2008-9-11-r167.PMCID: PMC2614481 |