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Volume 5;  2008
Commentary
Fractal parameters and vascular networks: facts & artifacts
Daniele Mancardi, Gianfranco Varetto, Enrico Bucci, Fabrizio Maniero, and Caterina Guiot
Theor Biol Med Model. 2008; 5: 12. Published online 2008 July 17. doi: 10.1186/1742-4682-5-12.
PMCID: PMC2490683
Research
A mathematical model of venous neointimal hyperplasia formation
Paula Budu-Grajdeanu, Richard C Schugart, Avner Friedman, Christopher Valentine, Anil K Agarwal, and Brad H Rovin
Theor Biol Med Model. 2008; 5: 2. Published online 2008 January 23. doi: 10.1186/1742-4682-5-2.
PMCID: PMC2263040
Variance in multiplex suspension array assays: A distribution generation machine for multiplex counts
Brian P Hanley
Theor Biol Med Model. 2008; 5: 3. Published online 2008 January 28. doi: 10.1186/1742-4682-5-3.
PMCID: PMC2267777
Scaling, growth and cyclicity in biology: a new computational approach
Pier Paolo Delsanto, Antonio S Gliozzi, and Caterina Guiot
Theor Biol Med Model. 2008; 5: 5. Published online 2008 February 29. doi: 10.1186/1742-4682-5-5.
PMCID: PMC2289804
Functional mapping imprinted quantitative trait loci underlying developmental characteristics
Yuehua Cui, Shaoyu Li, and Gengxin Li
Theor Biol Med Model. 2008; 5: 6. Published online 2008 March 17. doi: 10.1186/1742-4682-5-6.
PMCID: PMC2324076
A statistical model for the identification of genes governing the incidence of cancer with age
Kiranmoy Das and Rongling Wu
Theor Biol Med Model. 2008; 5: 7. Published online 2008 April 16. doi: 10.1186/1742-4682-5-7.
PMCID: PMC2365934
A mathematical model of glutathione metabolism
Michael C Reed, Rachel L Thomas, Jovana Pavisic, S Jill James, Cornelia M Ulrich, and H Frederik Nijhout
Theor Biol Med Model. 2008; 5: 8. Published online 2008 April 28. doi: 10.1186/1742-4682-5-8.
PMCID: PMC2391141
Probability landscapes for integrative genomics
Annick Lesne and Arndt Benecke
Theor Biol Med Model. 2008; 5: 9. Published online 2008 May 20. doi: 10.1186/1742-4682-5-9.
PMCID: PMC2409305
Origin of the blood hyperserotonemia of autism
Skirmantas Janušonis
Theor Biol Med Model. 2008; 5: 10. Published online 2008 May 22. doi: 10.1186/1742-4682-5-10.
PMCID: PMC2488334
Introduction of an agent-based multi-scale modular architecture for dynamic knowledge representation of acute inflammation
Gary An
Theor Biol Med Model. 2008; 5: 11. Published online 2008 May 27. doi: 10.1186/1742-4682-5-11.
PMCID: PMC2442588
Heterogeneity in multistage carcinogenesis and mixture modeling
Sandro Gsteiger and Stephan Morgenthaler
Theor Biol Med Model. 2008; 5: 13. Published online 2008 July 21. doi: 10.1186/1742-4682-5-13.
PMCID: PMC2515834
Correlation between nucleotide composition and folding energy of coding sequences with special attention to wobble bases
Jan C Biro
Theor Biol Med Model. 2008; 5: 14. Published online 2008 July 29. doi: 10.1186/1742-4682-5-14.
PMCID: PMC2515297
The velocity of the arterial pulse wave: a viscous-fluid shock wave in an elastic tube
Page R Painter
Theor Biol Med Model. 2008; 5: 15. Published online 2008 July 29. doi: 10.1186/1742-4682-5-15.
PMCID: PMC2527553
Does codon bias have an evolutionary origin?
Jan C Biro
Theor Biol Med Model. 2008; 5: 16. Published online 2008 July 30. doi: 10.1186/1742-4682-5-16.
PMCID: PMC2519059
The hyperbolic effect of density and strength of inter beta-cell coupling on islet bursting: a theoretical investigation
Aparna Nittala and Xujing Wang
Theor Biol Med Model. 2008; 5: 17. Published online 2008 August 3. doi: 10.1186/1742-4682-5-17.
PMCID: PMC2538510
Identification of restriction endonuclease with potential ability to cleave the HSV-2 genome: Inherent potential for biosynthetic versus live recombinant microbicides
Misaki Wayengera, Henry Kajumbula, and Wilson Byarugaba
Theor Biol Med Model. 2008; 5: 18. Published online 2008 August 7. doi: 10.1186/1742-4682-5-18.
PMCID: PMC2526989
Utility of a single adjusting compartment: a novel methodology for whole body physiologically-based pharmacokinetic modelling
Hirotaka Ando, Shigeru Izawa, Wataru Hori, and Ippei Nakagawa
Theor Biol Med Model. 2008; 5: 19. Published online 2008 August 8. doi: 10.1186/1742-4682-5-19.
PMCID: PMC2542356
Feature context-dependency and complexity-reduction in probability landscapes for integrative genomics
Annick Lesne and Arndt Benecke
Theor Biol Med Model. 2008; 5: 21. Published online 2008 September 10. doi: 10.1186/1742-4682-5-21.
PMCID: PMC2559821
Analysis of novel geometry-independent method for dialysis access pressure-flow monitoring
William F Weitzel, Casey L Cotant, Zhijie Wen, Rohan Biswas, Prashant Patel, Harsha Panduranga, Yogesh B Gianchandani, and Jonathan M Rubin
Theor Biol Med Model. 2008; 5: 22. Published online 2008 November 5. doi: 10.1186/1742-4682-5-22.
PMCID: PMC2586012
Transient antiretroviral therapy selecting for common HIV-1 mutations substantially accelerates the appearance of rare mutations
Tinevimbo Shiri and Alex Welte
Theor Biol Med Model. 2008; 5: 25. Published online 2008 November 14. doi: 10.1186/1742-4682-5-25.
PMCID: PMC2605440
Reviews
The Peter Pan paradigm
J Craig Cohen and Janet E Larson
Theor Biol Med Model. 2008; 5: 1. Published online 2008 January 8. doi: 10.1186/1742-4682-5-1.
PMCID: PMC2249573
Extracting key information from historical data to quantify the transmission dynamics of smallpox
Hiroshi Nishiura, Stefan O Brockmann, and Martin Eichner
Theor Biol Med Model. 2008; 5: 20. Published online 2008 August 20. doi: 10.1186/1742-4682-5-20.
PMCID: PMC2538509
Mitochondrial concept of leukemogenesis: key role of oxygen-peroxide effects
Boris N Lyu, Sanzhar B Ismailov, Bolat Ismailov, and Marina B Lyu
Theor Biol Med Model. 2008; 5: 23. Published online 2008 November 11. doi: 10.1186/1742-4682-5-23.
PMCID: PMC2614412
Activation instead of blocking mesolimbic dopaminergic reward circuitry is a preferred modality in the long term treatment of reward deficiency syndrome (RDS): a commentary
Kenneth Blum, Amanda Lih Chuan Chen, Thomas JH Chen, Eric R Braverman, Jeffrey Reinking, Seth H Blum, Kimberly Cassel, Bernard W Downs, Roger L Waite, Lonna Williams, Thomas J Prihoda, Mallory M Kerner, Tomas Palomo, David E Comings, Howard Tung, Patrick Rhoades, and Marlene Oscar-Berman
Theor Biol Med Model. 2008; 5: 24. Published online 2008 November 12. doi: 10.1186/1742-4682-5-24.
PMCID: PMC2615745
Software
Sampling and sensitivity analyses tools (SaSAT) for computational modelling
Alexander Hoare, David G Regan, and David P Wilson
Theor Biol Med Model. 2008; 5: 4. Published online 2008 February 27. doi: 10.1186/1742-4682-5-4.
PMCID: PMC2292159
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