| | This journal provides immediate access to some articles. Other Issues: previous | next | latest | archiveLetters Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, Francisco M. de la Vega, Andrew G. Clark, and Rasmus Nielsen PMCID: PMC2493391 Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions Stefan Kirsch, Claudia Münch, Zhaoshi Jiang, Ze Cheng, Lin Chen, Christiane Batz, Evan E. Eichler, and Werner Schempp PMCID: PMC2493392 A diversity profile of the human skin microbiota Elizabeth A. Grice, Heidi H. Kong, Gabriel Renaud, Alice C. Young, Gerard G. Bouffard, Robert W. Blakesley, Tyra G. Wolfsberg, Maria L. Turner, Julia A. Segre, and NISC Comparative Sequencing Program PMCID: PMC2493393 A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A. Malek, Gina Costa, Kevin McKernan, Arend Sidow, Andrew Fire, and Steven M. Johnson PMCID: PMC2493394 A high-resolution map of nucleosome positioning on a fission yeast centromere Jun S. Song, Xingkun Liu, X. Shirley Liu, and Xiangwei He PMCID: PMC2493395 A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, and B. Franklin Pugh PMCID: PMC2493396 Two strategies for gene regulation by promoter nucleosomes Itay Tirosh and Naama Barkai PMCID: PMC2493397 The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast Gabriel Musso, Michael Costanzo, ManQin Huangfu, Andrew M. Smith, Jadine Paw, Bryan-Joseph San Luis, Charles Boone, Guri Giaever, Corey Nislow, Andrew Emili, and Zhaolei Zhang PMCID: PMC2493398 The amphioxus genome illuminates vertebrate origins and cephalochordate biology Linda Z. Holland, Ricard Albalat, Kaoru Azumi, Èlia Benito-Gutiérrez, Matthew J. Blow, Marianne Bronner-Fraser, Frederic Brunet, Thomas Butts, Simona Candiani, Larry J. Dishaw, David E.K. Ferrier, Jordi Garcia-Fernàndez, Jeremy J. Gibson-Brown, Carmela Gissi, Adam Godzik, Finn Hallböök, Dan Hirose, Kazuyoshi Hosomichi, Tetsuro Ikuta, Hidetoshi Inoko, Masanori Kasahara, Jun Kasamatsu, Takeshi Kawashima, Ayuko Kimura, Masaaki Kobayashi, Zbynek Kozmik, Kaoru Kubokawa, Vincent Laudet, Gary W. Litman, Alice C. McHardy, Daniel Meulemans, Masaru Nonaka, Robert P. Olinski, Zeev Pancer, Len A. Pennacchio, Mario Pestarino, Jonathan P. Rast, Isidore Rigoutsos, Marc Robinson-Rechavi, Graeme Roch, Hidetoshi Saiga, Yasunori Sasakura, Masanobu Satake, Yutaka Satou, Michael Schubert, Nancy Sherwood, Takashi Shiina, Naohito Takatori, Javier Tello, Pavel Vopalensky, Shuichi Wada, Anlong Xu, Yuzhen Ye, Keita Yoshida, Fumiko Yoshizaki, Jr-Kai Yu, Qing Zhang, Christian M. Zmasek, Pieter J. de Jong, Kazutoyo Osoegawa, Nicholas H. Putnam, Daniel S. Rokhsar, Noriyuki Satoh, and Peter W.H. Holland PMCID: PMC2493399 Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity Shengfeng Huang, Shaochun Yuan, Lei Guo, Yanhong Yu, Jun Li, Tao Wu, Tong Liu, Manyi Yang, Kui Wu, Huiling Liu, Jin Ge, Yingcai Yu, Huiqing Huang, Meiling Dong, Cuiling Yu, Shangwu Chen, and Anlong Xu PMCID: PMC2493400 Insights from the amphioxus genome on the origin of vertebrate neural crest Jr-Kai Yu, Daniel Meulemans, Sonja J. McKeown, and Marianne Bronner-Fraser PMCID: PMC2493401 Methods Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes Nitin Gupta, Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S. Lipton, Margaret Romine, Vineet Bafna, Richard D. Smith, and Pavel A. Pevzner PMCID: PMC2493402 Mapping translocation breakpoints by next-generation sequencing Wei Chen, Vera Kalscheuer, Andreas Tzschach, Corinna Menzel, Reinhard Ullmann, Marcel Holger Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora Lopez Pajares, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta Glaeser, Martin Vingron, and H. Hilger Ropers PMCID: PMC2493403 Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network Ivan Iossifov, Tian Zheng, Miron Baron, T. Conrad Gilliam, and Andrey Rzhetsky PMCID: PMC2493404 Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons Yao-Ting Huang, Feng-Chi Chen, Chiuan-Jung Chen, Hsin-Liang Chen, and Trees-Juen Chuang PMCID: PMC2493405 A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations Vijay K. Tiwari, Leslie Cope, Kelly M. McGarvey, Joyce E. Ohm, and Stephen B. Baylin PMCID: PMC2493406 Resource Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets Chaim Linhart, Yonit Halperin, and Ron Shamir PMCID: PMC2493407 |
