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Volume 22(24);  December 11, 1994
The cover of the journal
An analysis of genes regulated by the multi-functional transcriptional regulator Yin Yang-1.
A Shrivastava and K Calame
Nucleic Acids Res. 1994 December 11; 22(24): 5151–5155.
PMCID: PMC332053
Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames.
V V Solovyev, A A Salamov, and C B Lawrence
Nucleic Acids Res. 1994 December 11; 22(24): 5156–5163.
PMCID: PMC332054
Direct analysis of native and chimeric GATA specific DNA binding proteins from Aspergillus nidulans.
D G Peters and M X Caddick
Nucleic Acids Res. 1994 December 11; 22(24): 5164–5172.
PMCID: PMC332055
Phosphorylation of the c-Fos and c-Jun HOB1 motif stimulates its activation capacity.
A J Bannister, H J Brown, J A Sutherland, and T Kouzarides
Nucleic Acids Res. 1994 December 11; 22(24): 5173–5176.
PMCID: PMC332056
Family A and family B DNA polymerases are structurally related: evolutionary implications.
W Zhu and J Ito
Nucleic Acids Res. 1994 December 11; 22(24): 5177–5183.
PMCID: PMC332057
Two separate sites contribute to AP-1 activation of the promoter for 3-hydroxy-3-methylglutaryl coenzyme A synthase.
S M Vallett and T F Osborne
Nucleic Acids Res. 1994 December 11; 22(24): 5184–5189.
PMCID: PMC332058
The interaction between the first and last intron nucleotides in the second step of pre-mRNA splicing is independent of other conserved intron nucleotides.
B L Ruis, W J Kivens, and P G Siliciano
Nucleic Acids Res. 1994 December 11; 22(24): 5190–5195.
PMCID: PMC332059
Molecular characterisation of plant U14 small nucleolar RNA genes: closely linked genes are transcribed as polycistronic U14 transcripts.
D J Leader, J F Sanders, R Waugh, P Shaw, and J W Brown
Nucleic Acids Res. 1994 December 11; 22(24): 5196–5203.
PMCID: PMC332060
Studies of bacteriophage P2 DNA replication: localization of the cleavage site of the A protein.
Y Liu and E Haggård-Ljungquist
Nucleic Acids Res. 1994 December 11; 22(24): 5204–5210.
PMCID: PMC332061
Identification of a novel family of human endogenous retroviruses and characterization of one family member, HERV-K(C4), located in the complement C4 gene cluster.
M Tassabehji, T Strachan, M Anderson, R D Campbell, S Collier, and M Lako
Nucleic Acids Res. 1994 December 11; 22(24): 5211–5217.
PMCID: PMC332062
Electron microscopy mapping of oligopurine tracts in duplex DNA by peptide nucleic acid targeting.
V V Demidov, D I Cherny, A V Kurakin, M V Yavnilovich, V A Malkov, M D Frank-Kamenetskii, S H Sönnichsen, and P E Nielsen
Nucleic Acids Res. 1994 December 11; 22(24): 5218–5222.
PMCID: PMC332063
Splicing factor SF3a60 is the mammalian homologue of PRP9 of S.cerevisiae: the conserved zinc finger-like motif is functionally exchangeable in vivo.
A Krämer, P Legrain, F Mulhauser, K Gröning, R Brosi, and G Bilbe
Nucleic Acids Res. 1994 December 11; 22(24): 5223–5228.
PMCID: PMC332064
Modified RNA sequence pools for in vitro selection.
Y Lin, Q Qiu, S C Gill, and S D Jayasena
Nucleic Acids Res. 1994 December 11; 22(24): 5229–5234.
PMCID: PMC332065
Early dissociation of nuclear factor I from the origin during initiation of adenovirus DNA replication studied by origin immobilization.
F E Coenjaerts and P C van der Vliet
Nucleic Acids Res. 1994 December 11; 22(24): 5235–5240.
PMCID: PMC332066
Daunomycin modifies the sequence-selective recognition of DNA by actinomycin.
G S Ridge, C Bailly, D E Graves, and M J Waring
Nucleic Acids Res. 1994 December 11; 22(24): 5241–5246.
PMCID: PMC332067
Purification and characterization of human ribonuclease HII.
P Frank, S Albert, C Cazenave, and J J Toulmé
Nucleic Acids Res. 1994 December 11; 22(24): 5247–5254.
PMCID: PMC332068
Intron-less RNA injected into the nucleus of Xenopus oocytes accesses a regulated translation control pathway.
M Braddock, M Muckenthaler, M R White, A M Thorburn, J Sommerville, A J Kingsman, and S M Kingsman
Nucleic Acids Res. 1994 December 11; 22(24): 5255–5264.
PMCID: PMC332069
Re-replication of SV40 minichromosomes is inhibited at the stage of chain elongation.
T Krude, A Winter, and R Knippers
Nucleic Acids Res. 1994 December 11; 22(24): 5265–5270.
PMCID: PMC332070
The influence of imperfectly paired helices I and III on the catalytic activity of hammerhead ribozymes.
M Zoumadakis, W J Neubert, and M Tabler
Nucleic Acids Res. 1994 December 11; 22(24): 5271–5278.
PMCID: PMC332071
Hac1: a novel yeast bZIP protein binding to the CRE motif is a multicopy suppressor for cdc10 mutant of Schizosaccharomyces pombe.
H Nojima, S H Leem, H Araki, A Sakai, N Nakashima, Y Kanaoka, and Y Ono
Nucleic Acids Res. 1994 December 11; 22(24): 5279–5288.
PMCID: PMC332072
Identification of two mismatch-binding activities in protein extracts of Schizosaccharomyces pombe.
O Fleck, P Schär, and J Kohli
Nucleic Acids Res. 1994 December 11; 22(24): 5289–5295.
PMCID: PMC332073
Cloning of cDNAs from Arabidopsis thaliana that encode putative protein phosphatase 2C and a human Dr1-like protein by transformation of a fission yeast mutant.
T Kuromori and M Yamamoto
Nucleic Acids Res. 1994 December 11; 22(24): 5296–5301.
PMCID: PMC332074
Evolutionarily conserved elements in the 5' untranslated region of beta globin mRNA mediate site-specific priming of a unique hairpin structure during cDNA synthesis.
V Z Volloch, B Schweitzer, and S Rits
Nucleic Acids Res. 1994 December 11; 22(24): 5302–5309.
PMCID: PMC332075
RAP1 stimulates single- to double-strand association of yeast telomeric DNA: implications for telomere-telomere interactions.
E Gilson, T Müller, J Sogo, T Laroche, and S M Gasser
Nucleic Acids Res. 1994 December 11; 22(24): 5310–5320.
PMCID: PMC332076
Exclusion of RNA strands from a purine motif triple helix.
C L Semerad and L J Maher, 3rd
Nucleic Acids Res. 1994 December 11; 22(24): 5321–5325.
PMCID: PMC332077
Suppression of mutations in the core of the Tetrahymena ribozyme by spermidine, ethanol and by substrate stabilization.
M Hanna and J W Szostak
Nucleic Acids Res. 1994 December 11; 22(24): 5326–5331.
PMCID: PMC332078
The yeast BDF1 gene encodes a transcription factor involved in the expression of a broad class of genes including snRNAs.
Z Lygerou, C Conesa, P Lesage, R N Swanson, A Ruet, M Carlson, A Sentenac, and B Séraphin
Nucleic Acids Res. 1994 December 11; 22(24): 5332–5340.
PMCID: PMC332079
Sarkosyl block of transcription reinitiation by RNA polymerase II as visualized by the colliding polymerases reinitiation assay.
M N Szentirmay and M Sawadogo
Nucleic Acids Res. 1994 December 11; 22(24): 5341–5346.
PMCID: PMC332080
Regulation of EcoRII methyltransferase: effect of mutations on gene expression and in vitro binding to the promoter region.
S Som and S Friedman
Nucleic Acids Res. 1994 December 11; 22(24): 5347–5353.
PMCID: PMC332081
The CpG-specific methylase SssI has topoisomerase activity in the presence of Mg2+.
K Matsuo, J Silke, K Gramatikoff, and W Schaffner
Nucleic Acids Res. 1994 December 11; 22(24): 5354–5359.
PMCID: PMC332082
Requirements for noncovalent binding of vaccinia topoisomerase I to duplex DNA.
J Sekiguchi and S Shuman
Nucleic Acids Res. 1994 December 11; 22(24): 5360–5365.
PMCID: PMC332083
Rapid pulsed field separation of DNA molecules up to 250 kb.
B Birren and E Lai
Nucleic Acids Res. 1994 December 11; 22(24): 5366–5370.
PMCID: PMC332084
Interactions of DNA binding ligands with PNA-DNA hybrids.
P Wittung, S K Kim, O Buchardt, P Nielsen, and B Nordèn
Nucleic Acids Res. 1994 December 11; 22(24): 5371–5377.
PMCID: PMC332085
Higher-order structure of bovine mitochondrial tRNA(SerUGA): chemical modification and computer modeling.
Y Watanabe, G Kawai, T Yokogawa, N Hayashi, Y Kumazawa, T Ueda, K Nishikawa, I Hirao, K Miura, and K Watanabe
Nucleic Acids Res. 1994 December 11; 22(24): 5378–5384.
PMCID: PMC332086
Initiation zone of DNA replication at the aldolase B locus encompasses transcription promoter region.
Y Zhao, R Tsutsumi, M Yamaki, Y Nagatsuka, S Ejiri, and K Tsutsumi
Nucleic Acids Res. 1994 December 11; 22(24): 5385–5390.
PMCID: PMC332087
High frequency vector-mediated transformation and gene replacement in Tetrahymena.
J Gaertig, L Gu, B Hai, and M A Gorovsky
Nucleic Acids Res. 1994 December 11; 22(24): 5391–5398.
PMCID: PMC332088
Alternate pathways for processing in the internal transcribed spacer 1 in pre-rRNA of Saccharomyces cerevisiae.
L Lindahl, R H Archer, and J M Zengel
Nucleic Acids Res. 1994 December 11; 22(24): 5399–5407.
PMCID: PMC332089
Non-covalent DNA groove-binding by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine.
G A Marsch, R L Ward, M Colvin, and K W Turteltaub
Nucleic Acids Res. 1994 December 11; 22(24): 5408–5415.
PMCID: PMC332090
Oligonucleotides with novel, cationic backbone substituents: aminoethylphosphonates.
R Fathi, Q Huang, G Coppola, W Delaney, R Teasdale, A M Krieg, and A F Cook
Nucleic Acids Res. 1994 December 11; 22(24): 5416–5424.
PMCID: PMC332091
An AP1 binding site upstream of the kappa immunoglobulin intron enhancer binds inducible factors and contributes to expression.
J T Schanke, A Marcuzzi, R P Podzorski, and B Van Ness
Nucleic Acids Res. 1994 December 11; 22(24): 5425–5432.
PMCID: PMC332092
Elimination of endogenous aberrant kappa chain transcripts from sp2/0-derived hybridoma cells by specific ribozyme cleavage: utility in genetic therapy of HIV-1 infections.
L Duan and R J Pomerantz
Nucleic Acids Res. 1994 December 11; 22(24): 5433–5438.
PMCID: PMC332093
Enhanced resistance to nuclease degradation of nucleic acids complexed to asialoglycoprotein-polylysine carriers.
H C Chiou, M V Tangco, S M Levine, D Robertson, K Kormis, C H Wu, and G Y Wu
Nucleic Acids Res. 1994 December 11; 22(24): 5439–5446.
PMCID: PMC332094
Structural properties of the [d(G3T4G3)]2 quadruplex: evidence for sequential syn-syn deoxyguanosines.
G D Strahan, R H Shafer, and M A Keniry
Nucleic Acids Res. 1994 December 11; 22(24): 5447–5455.
PMCID: PMC332095
Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports.
Z Guo, R A Guilfoyle, A J Thiel, R Wang, and L M Smith
Nucleic Acids Res. 1994 December 11; 22(24): 5456–5465.
PMCID: PMC332096
Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing.
C Ban, B Ramakrishnan, and M Sundaralingam
Nucleic Acids Res. 1994 December 11; 22(24): 5466–5476.
PMCID: PMC332097
Isolation and developmental expression of a rat cDNA encoding a cysteine-rich zinc finger protein.
C R McLaughlin, Q Tao, and M E Abood
Nucleic Acids Res. 1994 December 11; 22(24): 5477–5483.
PMCID: PMC332101
NMR investigation of Hoogsteen base pairing in quinoxaline antibiotic--DNA complexes: comparison of 2:1 echinomycin, triostin A and [N-MeCys3,N-MeCys7] TANDEM complexes with DNA oligonucleotides.
K J Addess and J Feigon
Nucleic Acids Res. 1994 December 11; 22(24): 5484–5491.
PMCID: PMC332104
Antisense pro-drugs: 5'-ester oligodeoxynucleotides.
N N Polushin and J S Cohen
Nucleic Acids Res. 1994 December 11; 22(24): 5492–5496.
PMCID: PMC332106
Bending and curvature calculations in B-DNA.
D S Goodsell and R E Dickerson
Nucleic Acids Res. 1994 December 11; 22(24): 5497–5503.
PMCID: PMC332108
Fast screening of mouse mutants generated after homologous recombination.
J Felthaus, H Haegel, and L Larue
Nucleic Acids Res. 1994 December 11; 22(24): 5504–5505.
PMCID: PMC332110
A rapid and simple method for the isolation of apoptotic DNA fragments.
M Herrmann, H M Lorenz, R Voll, M Grünke, W Woith, and J R Kalden
Nucleic Acids Res. 1994 December 11; 22(24): 5506–5507.
PMCID: PMC332111
Polymerase chain reaction products containing 5-methyldeoxycytidine: a microplate immunoquantitation method.
A Niveleau, E Drouet, C Reynaud, F Fares, C Bruno, and C Pain
Nucleic Acids Res. 1994 December 11; 22(24): 5508–5509.
PMCID: PMC332113
Improved method of gene detection using exon amplification.
M S Burfoot and R D Campbell
Nucleic Acids Res. 1994 December 11; 22(24): 5510–5511.
PMCID: PMC332115
Rapid PCR-based characterization of sequences flanking microsatellites in large-insert libraries.
J Rothuizen and M van Raak
Nucleic Acids Res. 1994 December 11; 22(24): 5512–5513.
PMCID: PMC332116
M.phi 3TII: a new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA-methyltransferases.
M Noyer-Weidner, J Walter, P A Terschüren, S Chai, and T A Trautner
Nucleic Acids Res. 1994 December 11; 22(24): 5517–5523.
PMCID: PMC332121
Correction
Isolation and characterization of two Saccharomyces cerevisiae genes that encode proteins that bind to (TG1-3)n single strand telomeric DNA in vitro
Nucleic Acids Res. 1994 December 11; 22(24): 5516.
PMCID: PMC332120
Corrects: J J Lin, et al. Isolation and characterization of two Saccharomyces cerevisiae genes that encode proteins that bind to (TG1-3)n single strand telomeric DNA in vitro. Nucleic Acids Res. 1994 November 25; 22(23): 4906–4913.
Erratum
M.[var phi]3TII: a new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA-methyltransferases
Nucleic Acids Res. 1994 December 11; 22(24): 5516.
PMCID: PMC332118
Corrects: M Noyer-Weidner, et al. M.phi 3TII: a new monospecific DNA (cytosine-C5) methyltransferase with pronounced amino acid sequence similarity to a family of adenine-N6-DNA-methyltransferases. Nucleic Acids Res. 1994 October 11; 22(20): 4066–4072.
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