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Volume 20(13);  July 11, 1992
The cover of the journal
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria.
T V Ilyina and E V Koonin
Nucleic Acids Res. 1992 July 11; 20(13): 3279–3285.
PMCID: PMC312478
Analysis of proteins binding to the proximal promoter region of the human cytomegalovirus IE-1/2 enhancer/promoter reveals both consensus and aberrant recognition sequences for transcription factors Sp1 and CREB.
D Lang, H Fickenscher, and T Stamminger
Nucleic Acids Res. 1992 July 11; 20(13): 3287–3295.
PMCID: PMC312479
SRF and MCM1 have related but distinct DNA binding specificities.
J Wynne and R Treisman
Nucleic Acids Res. 1992 July 11; 20(13): 3297–3303.
PMCID: PMC312480
Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.
T Yura, H Mori, H Nagai, T Nagata, A Ishihama, N Fujita, K Isono, K Mizobuchi, and A Nakata
Nucleic Acids Res. 1992 July 11; 20(13): 3305–3308.
PMCID: PMC312481
Mapping of a Physarum chromosomal origin of replication tightly linked to a developmentally-regulated profilin gene.
M Bénard and G Pierron
Nucleic Acids Res. 1992 July 11; 20(13): 3309–3315.
PMCID: PMC312482
Elk-1 protein domains required for direct and SRF-assisted DNA-binding.
R Janknecht and A Nordheim
Nucleic Acids Res. 1992 July 11; 20(13): 3317–3324.
PMCID: PMC312483
Synthesis and properties of mirror-image DNA.
H Urata, E Ogura, K Shinohara, Y Ueda, and M Akagi
Nucleic Acids Res. 1992 July 11; 20(13): 3325–3332.
PMCID: PMC312484
The AT-rich tract of the SV40 ori core: negative synergism and specific recognition by single stranded and duplex DNA binding proteins.
I Galli, S M Iguchi-Ariga, and H Ariga
Nucleic Acids Res. 1992 July 11; 20(13): 3333–3339.
PMCID: PMC312485
Nucleosomal histone protein protects DNA from iron-mediated damage.
H U Enright, W J Miller, and R P Hebbel
Nucleic Acids Res. 1992 July 11; 20(13): 3341–3346.
PMCID: PMC312486
Topoisomerase I is preferentially associated with normal SV40 replicative intermediates, but is associated with both replicating and nonreplicating SV40 DNAs which are deficient in histones.
J J Champoux
Nucleic Acids Res. 1992 July 11; 20(13): 3347–3352.
PMCID: PMC312487
Kinetoplast-associated DNA topoisomerase in Crithidia fasciculata: crosslinking of mitochondrial topoisomerase II to both minicircles and maxicircles in cells treated with the topoisomerase inhibitor VP16.
D S Ray, J C Hines, and M Anderson
Nucleic Acids Res. 1992 July 11; 20(13): 3353–3356.
PMCID: PMC312488
Site-specific dissection of E. coli chromosome by lambda terminase.
H Kotani, A Kawamura, A Takahashi, M Nakatsuji, N Hiraoka, K Nakajima, and M Takanami
Nucleic Acids Res. 1992 July 11; 20(13): 3357–3360.
PMCID: PMC312489
Variants of the Xenopus laevis ribosomal transcription factor xUBF are developmentally regulated by differential splicing.
A Guimond and T Moss
Nucleic Acids Res. 1992 July 11; 20(13): 3361–3366.
PMCID: PMC312490
Functional elements of the ribosomal protein L7a (rpL7a) gene promoter region and their conservation between mammals and birds.
P Colombo and M Fried
Nucleic Acids Res. 1992 July 11; 20(13): 3367–3373.
PMCID: PMC312491
Homologous RNA recombination allows efficient introduction of site-specific mutations into the genome of coronavirus MHV-A59 via synthetic co-replicating RNAs.
R G van der Most, L Heijnen, W J Spaan, and R J de Groot
Nucleic Acids Res. 1992 July 11; 20(13): 3375–3381.
PMCID: PMC312492
Mammalian promoter element function in the fission yeast Schizosaccharomyces pombe.
H L Prentice and R E Kingston
Nucleic Acids Res. 1992 July 11; 20(13): 3383–3390.
PMCID: PMC312493
A comparison of the DNA bending activities of the DNA binding proteins CRP and TFIID.
K Gaston, A Bell, S Busby, and M Fried
Nucleic Acids Res. 1992 July 11; 20(13): 3391–3396.
PMCID: PMC312494
Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements.
Y Quentin
Nucleic Acids Res. 1992 July 11; 20(13): 3397–3401.
PMCID: PMC312495
Synthesis and properties of oligonucleotides containing aminodeoxythymidine units.
S M Gryaznov and R L Letsinger
Nucleic Acids Res. 1992 July 11; 20(13): 3403–3409.
PMCID: PMC312496
Synthesis and physical properties of anti-HIV antisense oligonucleotides bearing terminal lipophilic groups.
C MacKellar, D Graham, D W Will, S Burgess, and T Brown
Nucleic Acids Res. 1992 July 11; 20(13): 3411–3417.
PMCID: PMC312497
Construction of a human chromosome 4 YAC pool and analysis of artificial chromosome stability.
H M Sleister, K A Mills, S E Blackwell, A M Killary, J C Murray, and R E Malone
Nucleic Acids Res. 1992 July 11; 20(13): 3419–3425.
PMCID: PMC312498
Characterization of the factors binding to a PEPCK gene upstream hypersensitive site with LCR activity.
T E Cheyette, T Ip, S Faber, Y Matsui, and R Chalkley
Nucleic Acids Res. 1992 July 11; 20(13): 3427–3433.
PMCID: PMC312499
Expression of wild-type and mutant p53 proteins by recombinant vaccinia viruses.
D Ronen, Y Teitz, N Goldfinger, and V Rotter
Nucleic Acids Res. 1992 July 11; 20(13): 3435–3441.
PMCID: PMC312500
An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution.
V Ségault, A Mougin, A Grégoire, J Banroques, and C Branlant
Nucleic Acids Res. 1992 July 11; 20(13): 3443–3451.
PMCID: PMC312501
The prediction of exons through an analysis of spliceable open reading frames.
G B Hutchinson and M R Hayden
Nucleic Acids Res. 1992 July 11; 20(13): 3453–3462.
PMCID: PMC312502
Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNA(Pro)2 from Salmonella typhimurium induces suppression of frameshift mutations.
G E Sroga, F Nemoto, Y Kuchino, and G R Björk
Nucleic Acids Res. 1992 July 11; 20(13): 3463–3469.
PMCID: PMC312503
Escherichia coli promoters: neural networks develop distinct descriptions in learning to search for promoters of different spacing classes.
M C O'Neill
Nucleic Acids Res. 1992 July 11; 20(13): 3471–3477.
PMCID: PMC312504
A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae.
B Martin, O Humbert, M Camara, E Guenzi, J Walker, T Mitchell, P Andrew, M Prudhomme, G Alloing, and R Hakenbeck
Nucleic Acids Res. 1992 July 11; 20(13): 3479–3483.
PMCID: PMC312505
Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay.
D P Kalinowski, S Illenye, and B Van Houten
Nucleic Acids Res. 1992 July 11; 20(13): 3485–3494.
PMCID: PMC312506
A negative regulating element controlling transcription of the gene encoding acyl-CoA oxidase in Saccharomyces cerevisiae.
T W Wang, A S Lewin, and G M Small
Nucleic Acids Res. 1992 July 11; 20(13): 3495–3500.
PMCID: PMC312507
Predicting antisense oligonucleotide inhibitory efficacy: a computational approach using histograms and thermodynamic indices.
R A Stull, L A Taylor, and F C Szoka, Jr
Nucleic Acids Res. 1992 July 11; 20(13): 3501–3508.
PMCID: PMC312508
Nucleotide sequence of transfer RNA genes from the linear mitochondrial DNA of the yeast Williopsis mrakii and Pichia pijperi.
N Dinouël, F Sor, and H Fukuhara
Nucleic Acids Res. 1992 July 11; 20(13): 3509.
PMCID: PMC312509
Nucleotide sequence of genes for a 5.8S and 25S rRNA from rape seed (Brassica napus).
S Okumura and H Shimada
Nucleic Acids Res. 1992 July 11; 20(13): 3510.
PMCID: PMC312510
Nucleotide sequence of trnI(CAU) and rpl23 from Arabidopsis thaliana chloroplast genome.
C Luschnig and D Schweizer
Nucleic Acids Res. 1992 July 11; 20(13): 3511.
PMCID: PMC312511
Complete nucleotide sequence of a hepatitis E virus isolated from the Xinjiang epidemic (1986-1988) of China.
T T Aye, T Uchida, X Z Ma, F Iida, T Shikata, H Zhuang, and K M Win
Nucleic Acids Res. 1992 July 11; 20(13): 3512.
PMCID: PMC312512
ApaCI, an isoschizomer of BamHI isolated from Acetobacter pasteurianus.
J Grones and J Turna
Nucleic Acids Res. 1992 July 11; 20(13): 3513.
PMCID: PMC312513
Nucleotide sequence of tryptophan tRNA from Bacillus subtilis.
J Matsugi, K Murao, and H Ishikura
Nucleic Acids Res. 1992 July 11; 20(13): 3514.
PMCID: PMC312514
Cloning and sequencing of the 3' half of a potato virus Y (O strain) genome encoding the 5k protein, protease, polymerase and coat protein.
M Hidaka, Y Yoshida, H Masaki, S Namba, S Yamashita, T Tsuchizaki, and T Uozumi
Nucleic Acids Res. 1992 July 11; 20(13): 3515.
PMCID: PMC312515
Nucleotide sequence of a mouse cDNA encoding the nonhistone chromosomal high mobility group protein-1 (HMG1).
W V Yotov and R St-Arnaud
Nucleic Acids Res. 1992 July 11; 20(13): 3516.
PMCID: PMC312516
Nucleotide sequences of 16S rRNA encoding genes from halophilic archaea Halococcus morrhuae NRC16008 and Haloferax mediterranei ATCC33500.
M Kamekura and Y Seno
Nucleic Acids Res. 1992 July 11; 20(13): 3517.
PMCID: PMC312517
Sequence of a new snRNA from the ciliate Tetrahymena thermophila.
H Orum, H Nielsen, and J Engberg
Nucleic Acids Res. 1992 July 11; 20(13): 3518.
PMCID: PMC312518
Nucleotide sequence of a mouse testis poly(A) binding protein cDNA.
M Y Wang, M Cutler, I Karimpour, and K C Kleene
Nucleic Acids Res. 1992 July 11; 20(13): 3519.
PMCID: PMC312519
Group specific sequences and conserved secondary structures at the 3' end of HCV genome and its implication for viral replication.
J H Han and M Houghton
Nucleic Acids Res. 1992 July 11; 20(13): 3520.
PMCID: PMC312520
IS91 transposase is related to the rolling-circle-type replication proteins of the pUB110 family of plasmids.
M V Mendiola and F de la Cruz
Nucleic Acids Res. 1992 July 11; 20(13): 3521.
PMCID: PMC312521
Prediction of oligodeoxyribonucleotides eluting salt conditions on anion exchange column.
J L Vaerman, P Moureau, Y Larondelle, P Martiat, and M Philippe
Nucleic Acids Res. 1992 July 11; 20(13): 3522.
PMCID: PMC312522
Basic peptides enhance protein/DNA interaction in vitro.
A J Bannister and T Kouzarides
Nucleic Acids Res. 1992 July 11; 20(13): 3523.
PMCID: PMC312523
Triplex affinity capture of a single copy clone from a yeast genomic library.
T Ito, C L Smith, and C R Cantor
Nucleic Acids Res. 1992 July 11; 20(13): 3524.
PMCID: PMC312524
A high-capacity column for affinity purification of sequence-specific DNA-binding proteins.
C J Larson and G L Verdine
Nucleic Acids Res. 1992 July 11; 20(13): 3525.
PMCID: PMC312525
Transient expression of DNA in Drosophila via electroporation.
P Kamdar, G Von Allmen, and V Finnerty
Nucleic Acids Res. 1992 July 11; 20(13): 3526.
PMCID: PMC312526
A procedure to standardize CAT reporter gene assay.
H Abken and B Reifenrath
Nucleic Acids Res. 1992 July 11; 20(13): 3527.
PMCID: PMC312527
A novel method for the isolation of tissue-specific genes.
I R Rodriguez and G J Chader
Nucleic Acids Res. 1992 July 11; 20(13): 3528.
PMCID: PMC312528
Preparation of nested deletions in single-strand DNA using oligonucleotides containing partially random base sequences.
B Milavetz
Nucleic Acids Res. 1992 July 11; 20(13): 3529–3530.
PMCID: PMC312529
New nucleotide sequence data on the EMBL File Server.
Nucleic Acids Res. 1992 July 11; 20(13): 3531–3546.
PMCID: PMC312530
Corrections
cDNA sequence of rabbit tissue factor pathway inhibitor.
B J Warn-Cramer, G J Broze, Jr, and E A Komives
Nucleic Acids Res. 1992 July 11; 20(13): 3548.
PMCID: PMC312531
Corrects: R L Wesselschmidt, et al. cDNA sequence of rabbit lipoprotein-associated coagulation inhibitor. Nucleic Acids Res. 1990 November 11; 18(21): 6440.
7-deaza-2′-deoxyadenosine and 3-deaza-2′-deoxyadenosine replacing dA within d(A6)-tracts: differential bending at 3′- and 5′-junctions of d(A6)·d(T6) and B-DNA
Nucleic Acids Res. 1992 July 11; 20(13): 3549.
PMCID: PMC312532
Corrects: Frank Seela, et al. 7-Deaza-2′-deoxyadenosine and 3-deaza-2′-deoxyadenosine replacing dA within d(A6)-tracts: differential bending at 3′- and 5′-junctions of d(A6)·d(T6) and B-DNA. Nucleic Acids Res. 1992 May 11; 20(9): 2297–2306.
Purification of PCNA as a nucleotide excision repair protein
Nucleic Acids Res. 1992 July 11; 20(13): 3549.
PMCID: PMC312533
Corrects: Anne F. Nichols, et al. Purification of PCNA as a nucleotide excision repair protein. Nucleic Acids Res. 1992 May 25; 20(10): 2441–2446.
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