| | Articles SURVEY AND SUMMARY: Unusual DNA duplex and hairpin motifs Shan-Ho Chou, Ko-Hsin Chin, and Andrew H.-J. Wang PMCID: PMC156048 The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation Daniel Schaft, Assen Roguev, Kimberly M. Kotovic, Anna Shevchenko, Mihail Sarov, Andrej Shevchenko, Karla M. Neugebauer, and A. Francis Stewart PMCID: PMC156053 The capacity to form H-DNA cannot substitute for GAGA factor binding to a (CT)n·(GA)n regulatory site Quinn Lu, John M. Teare, Howard Granok, Marci J. Swede, Jenny Xu, and Sarah C. R. Elgin PMCID: PMC156050 RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs Guozhong Yuan, Christian Klämbt, Jean-Pierre Bachellerie, Jürgen Brosius, and Alexander Hüttenhofer PMCID: PMC156043 Translational control of Scamper expression via a cell-specific internal ribosome entry site Davide De Pietri Tonelli, Marija Mihailovich, Raphaela Schnurbus, Graziano Pesole, Fabio Grohovaz, and Daniele Zacchetti PMCID: PMC156039 Synthesis, thermal stability and resistance to enzymatic hydrolysis of the oligonucleotides containing 5-(N-aminohexyl)carbamoyl-2′-O-methyluridines Takanori Ito, Yoshihito Ueno, Yasuo Komatsu, and Akira Matsuda PMCID: PMC156055 RRP20, a component of the 90S preribosome, is required for pre-18S rRNA processing in Saccharomyces cerevisiae Saengchan Senapin, G. Desmond Clark-Walker, Xin Jie Chen, Bertrand Séraphin, and Marie-Claire Daugeron PMCID: PMC156047 Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array Sheng-Jian Ji, Ying-Chun Lu, Jian-Xun Feng, Gang Wei, Jun Li, Yong-Hui Shi, Qiang Fu, Di Liu, Jing-Chu Luo, and Yu-Xian Zhu PMCID: PMC156040 Conservation of human alternative splice events in mouse T. A. Thanaraj, Francis Clark, and Juha Muilu PMCID: PMC156037 Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans Kwang-Zin Lee, Andreas Eizinger, Ramkumar Nandakumar, Stephan C. Schuster, and Ralf J. Sommer PMCID: PMC156041 Spectroscopic studies of the multiple binding modes of a trimethine-bridged cyanine dye with DNA Kristine M. Sovenyhazy, Jason A. Bordelon, and Jeffrey T. Petty PMCID: PMC156045 Mutagenic effects of 2-hydroxy-dATP on replication in a HeLa extract: induction of substitution and deletion mutations Kazuya Satou, Hideyoshi Harashima, and Hiroyuki Kamiya PMCID: PMC156049 Multiple recombination pathways for sister chromatid exchange in Saccharomyces cerevisiae: role of RAD1 and the RAD52 epistasis group genes Zheng Dong and Michael Fasullo PMCID: PMC156034 Developmental co-variation of RNA editing extent of plastid editing sites exhibiting similar cis-elements Anne-Laure Chateigner-Boutin and Maureen R. Hanson PMCID: PMC156036 Zinc-dependent cleavage in the catalytic core of the hammerhead ribozyme: evidence for a pH-dependent conformational change Emily J. Borda, John C. Markley, and Snorri Th. Sigurdsson PMCID: PMC156031 The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa Chun-Long Chen, Dan Liang, Hui Zhou, Min Zhuo, Yue-Qin Chen, and Liang-Hu Qu PMCID: PMC156054 The solution structure of an essential stem–loop of human telomerase RNA Thomas Leeper, Nicolas Leulliot, and Gabriele Varani PMCID: PMC156033 Solution structure of the ActD–5′-CCGTT3GTGG-3′ complex: drug interaction with tandem G·T mismatches and hairpin loop backbone Ko-Hsin Chin, Fu-Ming Chen, and Shan-Ho Chou PMCID: PMC156035 Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. I. Chemical synthesis of various reporter group-labeled 2′-deoxyribonucleoside-5′-triphosphates Gerald Giller, Taurai Tasara, Bernhard Angerer, Klaus Mühlegger, Mario Amacker, and Holger Winter PMCID: PMC156051 Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. II. High-density labeling of natural DNA Taurai Tasara, Bernhard Angerer, Martine Damond, Holger Winter, Sabine Dörhöfer, Ulrich Hübscher, and Mario Amacker PMCID: PMC156052 An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data Aditi Kanhere and Manju Bansal PMCID: PMC156044 Transcription affects formation and processing of intermediates in oligonucleotide-mediated gene alteration Olga Igoucheva, Vitali Alexeev, Melissa Pryce, and Kyonggeun Yoon PMCID: PMC156042 A crystallographic study of the binding of 13 metal ions to two related RNA duplexes Eric Ennifar, Philippe Walter, and Philippe Dumas PMCID: PMC156032 The solution structure of a DNA·RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications Jeffrey I. Gyi, Daquan Gao, Graeme L. Conn, John O. Trent, Tom Brown, and Andrew N. Lane PMCID: PMC156038 The (52–96) C-terminal domain of Vpr stimulates HIV-1 IN-mediated homologous strand transfer of mini-viral DNA Julien Bischerour, Patrick Tauc, Hervé Leh, Hugues de Rocquigny, Bernard Roques, and Jean-François Mouscadet PMCID: PMC156046 NAR Methods Online Immunofluorescence assay and flow-cytometry selection of bead-bound aptamers Xianbin Yang, Xin Li, Tarl W. Prow, Lisa M. Reece, Suzanne E. Bassett, Bruce A. Luxon, Norbert K. Herzog, Judy Aronson, Robert E. Shope, James F. Leary, and David G. Gorenstein PMCID: PMC156057 A new and versatile method for the successful conversion of AFLP markers into simple single locus markers Bart Brugmans, Ron G. M. van der Hulst, Richard G. F. Visser, Pim Lindhout, and Herman J. van Eck PMCID: PMC156058 Real-time PCR-based method for the estimation of genome sizes Jochen Wilhelm, Alfred Pingoud, and Meinhard Hahn PMCID: PMC156059 An inbred 129SvEv GFPCre transgenic mouse that deletes loxP-flanked genes in all tissues John R. Scheel, Lisa J. Garrett, Duane M. Allen, Todd A. Carter, Lynne Randolph-Moore, Micheal J. Gambello, Fred H. Gage, Anthony Wynshaw-Boris, and Carrolee Barlow PMCID: PMC156060 Errata Nucleic Acids Res. 2003 May 15; 31(10): 2703. PMCID: PMC156056 Corrects: Emmanuel Giudice, et al. Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations. Nucleic Acids Res. 2003 March 1; 31(5): 1434–1443. Nucleic Acids Res. 2003 May 15; 31(10): e58. PMCID: PMC156061 Corrects: Hubert Zipper, et al. Mechanisms underlying the impact of humic acids on DNA quantification by SYBR Green I and consequences for the analysis of soils and aquatic sediments. Nucleic Acids Res. 2003 April 1; 31(7): e39. |
