| | Obituary Nucleic Acids Res. 2003 February 15; 31(4): 1119. PMCID: PMC150243 Articles Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns Elisabeth Bon, Serge Casaregola, Gaëlle Blandin, Bertrand Llorente, Cécile Neuvéglise, Martin Munsterkotter, Ulrich Guldener, Hans-Werner Mewes, Jacques Van Helden, Bernard Dujon, and Claude Gaillardin PMCID: PMC150231 A small nuclear RNA, hdm365, is the major processing product of the human mdm2 gene S. Bartl, J. Ban, H. Weninger, G. Jug, and H. Kovar PMCID: PMC150226 Characterization of Arabidopsis thaliana ortholog of the human breast cancer susceptibility gene 1: AtBRCA1, strongly induced by gamma rays S. Lafarge and M.-H. Montané PMCID: PMC150221 Structural transition from antiparallel to parallel G-quadruplex of d(G4T4G4) induced by Ca2+ Daisuke Miyoshi, Akihiro Nakao, and Naoki Sugimoto PMCID: PMC150229 Gene conversion tracts in Saccharomyces cerevisiae can be extremely short and highly directional Sean Palmer, Ezra Schildkraut, Raquel Lazarin, Jimmy Nguyen, and Jac A. Nickoloff PMCID: PMC150237 Expression of tetanus toxin Fragment C in tobacco chloroplasts John S. Tregoning, Peter Nixon, Hiroshi Kuroda, Zora Svab, Simon Clare, Frances Bowe, Neil Fairweather, Jimmy Ytterberg, Klaas J. van Wijk, Gordon Dougan, and Pal Maliga PMCID: PMC150239 β-Globin locus control region HS2 and HS3 interact structurally and functionally David A. Jackson, Jennifer C. McDowell, and Ann Dean PMCID: PMC150235 Identification of high excision capacity for 5-hydroxymethyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases Masaki Hori, Shuji Yonei, Hiroshi Sugiyama, Katsuhito Kino, Kazuo Yamamoto, and Qiu-Mei Zhang PMCID: PMC150241 Translational nonsense codon suppression as indicator for functional pre-tRNA splicing in transformed Arabidopsis hypocotyl-derived calli Kazuhito Akama and Hildburg Beier PMCID: PMC150238 DNA crosslinking and biological activity of a hairpin polyamide–chlorambucil conjugate Yong-Dong Wang, Jaroslaw Dziegielewski, Nicholas R. Wurtz, Barbara Dziegielewska, Peter B. Dervan, and Terry A. Beerman PMCID: PMC150233 A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase Mi-Kyung Lee, Sung-Hun Bae, Chin-Ju Park, Hae-Kap Cheong, Chaejoon Cheong, and Byong-Seok Choi PMCID: PMC150232 Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression Qun Yu, Runxiang Qiu, Travis B. Foland, Dan Griesen, Carl S. Galloway, Ya-Hui Chiu, Joseph Sandmeier, James R. Broach, and Xin Bi PMCID: PMC150219 Evolution of transcription factors and the gene regulatory network in Escherichia coli M. Madan Babu and Sarah A. Teichmann PMCID: PMC150228 ATIDB: Arabidopsis thaliana insertion database Xiaokang Pan, Hong Liu, Jonathan Clarke, Jonathan Jones, Mike Bevan, and Lincoln Stein PMCID: PMC150240 Protein–protein interaction map for yeast TFIID Gayatri Yatherajam, Lei Zhang, Susan M. Kraemer, and Laurie A. Stargell PMCID: PMC150223 Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP) Akiko Kobayashi, Tsuyoshi Miyake, Masashi Kawaichi, and Tetsuro Kokubo PMCID: PMC150217 A promoter activity is present in the DNA sequence corresponding to the hepatitis C virus 5′ UTR Estelle Dumas, Cathy Staedel, Marie Colombat, Sandrine Reigadas, Sandrine Chabas, Thérèse Astier-Gin, Annie Cahour, Simon Litvak, and Michel Ventura PMCID: PMC150218 Inhibition of human papilloma virus E2 DNA binding protein by covalently linked polyamides Thomas D. Schaal, William G. Mallet, Dustin L. McMinn, Nam V. Nguyen, Michelle M. Sopko, Sam John, and Bhavin S. Parekh PMCID: PMC150225 Characterization of the human β-globin downstream promoter region Kelly M. Leach, Karen F. Vieira, Sung-Hae Lee Kang, Ara Aslanian, Martin Teichmann, Robert G. Roeder, and Jörg Bungert PMCID: PMC150227 Smad proteins regulate transcriptional induction of the SM22α gene by TGF-β Shiyou Chen, Magdalena Kulik, and Robert J. Lechleider PMCID: PMC150242 Discrimination among individual Watson–Crick base pairs at the termini of single DNA hairpin molecules Wenonah A. Vercoutere, Stephen Winters-Hilt, Veronica S. DeGuzman, David Deamer, Sam E. Ridino, Joseph T. Rodgers, Hugh E. Olsen, Andre Marziali, and Mark Akeson PMCID: PMC150236 Hybridization kinetics and thermodynamics of molecular beacons Andrew Tsourkas, Mark A. Behlke, Scott D. Rose, and Gang Bao PMCID: PMC150230 Structural effect of the anticancer agent 6-thioguanine on duplex DNA Jen Bohon and Carlos R. de los Santos PMCID: PMC150222 Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome Piotr A. Ziolkowski, Guillaume Blanc, and Jan Sadowski PMCID: PMC150220 Limited repair of 8-hydroxy-7,8-dihydroguanine residues in human testicular cells Ann-Karin Olsen, Nur Duale, Magnar Bjørås, Cathrine T. Larsen, Richard Wiger, Jørn A. Holme, Erling C. Seeberg, and Gunnar Brunborg PMCID: PMC150234 A Ca2+-induced mitochondrial permeability transition causes complete release of rat liver endonuclease G activity from its exclusive location within the mitochondrial intermembrane space. Identification of a novel endo-exonuclease activity residing within the mitochondrial matrix Adrian M. Davies, Stuart Hershman, Gabriel J. Stabley, Jan B. Hoek, Jason Peterson, and Alan Cahill PMCID: PMC150224 NAR Methods Online Rapid generation of inducible mouse mutants Jost Seibler, Branko Zevnik, Birgit Küter-Luks, Susanne Andreas, Heidrun Kern, Thomas Hennek, Anja Rode, Cornelia Heimann, Nicole Faust, Gunther Kauselmann, Michael Schoor, Rudolf Jaenisch, Klaus Rajewsky, Ralf Kühn, and Frieder Schwenk PMCID: PMC150244 Directly labeled mRNA produces highly precise and unbiased differential gene expression data Vineet Gupta, Alex Cherkassky, Pamela Chatis, Richard Joseph, Andrew L. Johnson, Jeffrey Broadbent, Tom Erickson, and James DiMeo PMCID: PMC150245 Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes Martin J. Hessner, Xujing Wang, Katie Hulse, Lisa Meyer, Yan Wu, Steven Nye, Sun-Wei Guo, and Soumitra Ghosh PMCID: PMC150246 Summaries of Affymetrix GeneChip probe level data Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, and Terence P. Speed PMCID: PMC150247 A yeast-based growth assay for the analysis of site-specific proteases Fabian Köhler PMCID: PMC150248 Detection and analysis of spliced chimeric mRNAs in sequence databanks Antonello Romani, Emanuela Guerra, Marco Trerotola, and Saverio Alberti PMCID: PMC150249 Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays M. Juanita Martinez, Anthony D. Aragon, Angelina L. Rodriguez, Jose M. Weber, Jerilyn A. Timlin, Michael B. Sinclair, David M. Haaland, and Margaret Werner-Washburne PMCID: PMC150250 |
