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Volume 30(21);  November 1, 2002
Articles
Global genome removal of thymine glycol in Escherichia coli requires endonuclease III but the persistence of processed repair intermediates rather than thymine glycol correlates with cellular sensitivity to high doses of hydrogen peroxide
Mohammed Alanazi, Steven A. Leadon, and Isabel Mellon
Nucleic Acids Res. 2002 November 1; 30(21): 4583–4591.
PMCID: PMC135796
Temperature-dependent splicing of β-globin pre-mRNA
Federica Gemignani, Peter Sazani, Paul Morcos, and Ryszard Kole
Nucleic Acids Res. 2002 November 1; 30(21): 4592–4598.
PMCID: PMC135830
A versatile communication module for controlling RNA folding and catalysis
Alexis Kertsburg and Garrett A. Soukup
Nucleic Acids Res. 2002 November 1; 30(21): 4599–4606.
PMCID: PMC135812
The malaria parasite Plasmodium falciparum encodes members of the Puf RNA-binding protein family with conserved RNA binding activity
Liwang Cui, Qi Fan, and Jinfang Li
Nucleic Acids Res. 2002 November 1; 30(21): 4607–4617.
PMCID: PMC135818
Human telomeric DNA: G-quadruplex, i-motif and Watson–Crick double helix
Anh Tuân Phan and Jean-Louis Mergny
Nucleic Acids Res. 2002 November 1; 30(21): 4618–4625.
PMCID: PMC135813
Human mitochondrial DNA with large deletions repopulates organelles faster than full-length genomes under relaxed copy number control
Francisca Diaz, Maria Pilar Bayona-Bafaluy, Michele Rana, Marialejandra Mora, Huiling Hao, and Carlos T. Moraes
Nucleic Acids Res. 2002 November 1; 30(21): 4626–4633.
PMCID: PMC135822
In vivo and in vitro interaction between human transcription factor MOK2 and nuclear lamin A/C
Caroline Dreuillet, Jeanne Tillit, Michel Kress, and Michèle Ernoult-Lange
Nucleic Acids Res. 2002 November 1; 30(21): 4634–4642.
PMCID: PMC135794
A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains
Arnold M. Kiss, Beáta E. Jády, Xavier Darzacq, Céline Verheggen, Edouard Bertrand, and Tamás Kiss
Nucleic Acids Res. 2002 November 1; 30(21): 4643–4649.
PMCID: PMC135803
Domains of human U4atac snRNA required for U12-dependent splicing in vivo
Girish C. Shukla, Andrea J. Cole, Rosemary C. Dietrich, and Richard A. Padgett
Nucleic Acids Res. 2002 November 1; 30(21): 4650–4657.
PMCID: PMC135832
The curved DNA structure in the 5′-upstream region of the light-responsive genes: its universality, binding factor and function for cyanobacterial psbA transcription
Munehiko Asayama, Hideki Kato, Junko Shibato, Makoto Shirai, and Takashi Ohyama
Nucleic Acids Res. 2002 November 1; 30(21): 4658–4666.
PMCID: PMC140650
An analysis of the sequence requirements of EDEN-BP for specific RNA binding
Sylvie Bonnet-Corven, Yann Audic, Francis Omilli, and H. Beverley Osborne
Nucleic Acids Res. 2002 November 1; 30(21): 4667–4674.
PMCID: PMC135792
Multicopy genes uniquely amplified in the Y chromosome-specific repeats of the liverwort Marchantia polymorpha
Kimitsune Ishizaki, Yuu Shimizu-Ueda, Sachiko Okada, Masayuki Yamamoto, Masaki Fujisawa, Katsuyuki T. Yamato, Hideya Fukuzawa, and Kanji Ohyama
Nucleic Acids Res. 2002 November 1; 30(21): 4675–4681.
PMCID: PMC135825
Development and comparison of procedures for the selection of delta ribozyme cleavage sites within the hepatitis B virus
Lucien Junior Bergeron and Jean-Pierre Perreault
Nucleic Acids Res. 2002 November 1; 30(21): 4682–4691.
PMCID: PMC135815
Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells
Kensaku Sakamoto, Akiko Hayashi, Ayako Sakamoto, Daisuke Kiga, Hiroshi Nakayama, Akiko Soma, Takatsugu Kobayashi, Makoto Kitabatake, Koji Takio, Kazuki Saito, Mikako Shirouzu, Ichiro Hirao, and Shigeyuki Yokoyama
Nucleic Acids Res. 2002 November 1; 30(21): 4692–4699.
PMCID: PMC135798
Vanadate inhibits the ATPase activity and DNA binding capability of bacterial MutS. A structural model for the vanadate–MutS interaction at the Walker A motif
Roberto J. Pezza, Marcos A. Villarreal, Guillermo G. Montich, and Carlos E. Argaraña
Nucleic Acids Res. 2002 November 1; 30(21): 4700–4708.
PMCID: PMC135828
Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions
Heike Markel, John Chandler, and Wolfgang Werr
Nucleic Acids Res. 2002 November 1; 30(21): 4709–4719.
PMCID: PMC135802
Scanning confocal fluorescence microscopy for single molecule analysis of nucleotide excision repair complexes
G. M. J. Segers-Nolten, C. Wyman, N. Wijgers, W. Vermeulen, A. T. M. Lenferink, J. H. J. Hoeijmakers, J. Greve, and C. Otto
Nucleic Acids Res. 2002 November 1; 30(21): 4720–4727.
PMCID: PMC135816
The fission yeast pfh1+ gene encodes an essential 5′ to 3′ DNA helicase required for the completion of S-phase
Hiroyuki Tanaka, Gi-Hyuck Ryu, Yeon-Soo Seo, Koichi Tanaka, Hiroto Okayama, Stuart A. MacNeill, and Yasuhito Yuasa
Nucleic Acids Res. 2002 November 1; 30(21): 4728–4739.
PMCID: PMC135800
1H NMR determination of base-pair lifetimes in oligonucleotides containing single base mismatches
Pratip K. Bhattacharya, Julie Cha, and Jacqueline K. Barton
Nucleic Acids Res. 2002 November 1; 30(21): 4740–4750.
PMCID: PMC135820
Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding
Kelly N. Nobles, Connie S. Yarian, Guihua Liu, Richard H. Guenther, and Paul F. Agris
Nucleic Acids Res. 2002 November 1; 30(21): 4751–4760.
PMCID: PMC135809
PipeOnline 2.0: automated EST processing and functional data sorting
Patricia Ayoubi, Xiaojing Jin, Saul Leite, Xianghui Liu, Jeson Martajaja, Abdurashid Abduraham, Qiaolan Wan, Wei Yan, Eduardo Misawa, and Rolf A. Prade
Nucleic Acids Res. 2002 November 1; 30(21): 4761–4769.
PMCID: PMC135791
Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells
Shiro Koizume, Ken Tachibana, Takao Sekiya, Setsuo Hirohashi, and Masahiko Shiraishi
Nucleic Acids Res. 2002 November 1; 30(21): 4770–4780.
PMCID: PMC135805
The severe slow growth of Δsrs2 Δrqh1 in Schizosaccharomyces pombe is suppressed by loss of recombination and checkpoint genes
Mohamed Maftahi, Justin C. Hope, Lissette Delgado-Cruzata, Christine S. Han, and Greg A. Freyer
Nucleic Acids Res. 2002 November 1; 30(21): 4781–4792.
PMCID: PMC135788
Hydrazide oligonucleotides: new chemical modification for chip array attachment and conjugation
Stefan Raddatz, Jochen Mueller-Ibeler, Joachim Kluge, Ludger Wäß, Gerhard Burdinski, John R. Havens, Tom J. Onofrey, Daguang Wang, and Markus Schweitzer
Nucleic Acids Res. 2002 November 1; 30(21): 4793–4802.
PMCID: PMC135808
The apical stem–loop of the hepatitis B virus encapsidation signal folds into a stable tri–loop with two underlying pyrimidine bulges
Sara Flodell, Jürgen Schleucher, Jenny Cromsigt, Hans Ippel, Karin Kidd-Ljunggren, and Sybren Wijmenga
Nucleic Acids Res. 2002 November 1; 30(21): 4803–4811.
PMCID: PMC135823
NAR Methods Online
Advanced modular self-inactivating lentiviral expression vectors for multigene interventions in mammalian cells and in vivo transduction
Barbara Mitta, Markus Rimann, Markus U. Ehrengruber, Martin Ehrbar, Valentin Djonov, Jens Kelm, and Martin Fussenegger
Nucleic Acids Res. 2002 November 1; 30(21): e113.
PMCID: PMC135834
Synthesis and evaluation of phosphorescent oligonucleotide probes for hybridisation assays
Paul J. O’Sullivan, Martina Burke, Aleksi E. Soini, and Dmitri B. Papkovsky
Nucleic Acids Res. 2002 November 1; 30(21): e114.
PMCID: PMC135836
Stable and efficient cassette exchange under non-selectable conditions by combined use of two site-specific recombinases
Matthias Lauth, Fabio Spreafico, Kathrin Dethleffsen, and Michael Meyer
Nucleic Acids Res. 2002 November 1; 30(21): e115.
PMCID: PMC135837
A common reference for cDNA microarray hybridizations
Ellen Sterrenburg, Rolf Turk, Judith M. Boer, Gertjan B. van Ommen, and Johan T. den Dunnen
Nucleic Acids Res. 2002 November 1; 30(21): e116.
PMCID: PMC135839
Simultaneous determination of different DNA sequences by mass spectrometric evaluation of Sanger sequencing reactions
Annette Kaetzke and Klaus Eschrich
Nucleic Acids Res. 2002 November 1; 30(21): e117.
PMCID: PMC135840
BACFinder: genomic localisation of large insert genomic clones based on restriction fingerprinting
Mark L. Crowe, Debashis Rana, Fiona Fraser, Ian Bancroft, and Martin Trick
Nucleic Acids Res. 2002 November 1; 30(21): e118.
PMCID: PMC135841
Production of combinatorial libraries of fused genes by sequential transposition reactions
Todd A. Naumann, Igor Y. Goryshin, and William S. Reznikoff
Nucleic Acids Res. 2002 November 1; 30(21): e119.
PMCID: PMC135842
Designing gene libraries from protein profiles for combinatorial protein experiments
Wei Wang and Jeffery G. Saven
Nucleic Acids Res. 2002 November 1; 30(21): e120.
PMCID: PMC135844
EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites
Haibo Zhang, Y. Ramanathan, Patricia Soteropoulos, Michael L. Recce, and Peter P. Tolias
Nucleic Acids Res. 2002 November 1; 30(21): e121.
PMCID: PMC135846
Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes
Salvatore A. E. Marras, Fred Russell Kramer, and Sanjay Tyagi
Nucleic Acids Res. 2002 November 1; 30(21): e122.
PMCID: PMC135848
AarI, a restriction endonuclease from Arthrobacter aurescens SS2-322, which recognizes the novel non-palindromic sequence 5′-CACCTGC(N)4/8-3′
R. Grigaitė, Z. Manelienė, and A. Janulaitis
Nucleic Acids Res. 2002 November 1; 30(21): e123.
PMCID: PMC135850
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