| | Articles A novel type of uracil-DNA glycosylase mediating repair of hydrolytic DNA damage in the extremely thermophilic eubacterium Thermus thermophilus Vytaute Starkuviene and Hans-Joachim Fritz PMCID: PMC115290 Identification of essential domains for Escherichia coli tRNAleu aminoacylation and amino acid editing using minimalist RNA molecules Deana C. Larkin, Amy M. Williams, Susan A. Martinis, and George E. Fox PMCID: PMC115294 Site-specific and temporally controlled initiation of DNA replication in a human cell-free system Christian Keller, Olivier Hyrien, Rolf Knippers, and Torsten Krude PMCID: PMC115293 Reconstitution of the base excision repair pathway for 7,8-dihydro-8-oxoguanine with purified human proteins B. Pascucci, G. Maga, U. Hübscher, M. Bjoras, E. Seeberg, I. D. Hickson, G. Villani, C. Giordano, L. Cellai, and E. Dogliotti PMCID: PMC115284 Epstein–Barr virus nuclear antigen 5 inhibits pre-mRNA cleavage and polyadenylation Martin Dufva, Josefine Flodin, Annika Nerstedt, Ulla Rüetschi, and Lars Rymo PMCID: PMC115292 Functional characterisation of mycobacterial DNA gyrase: an efficient decatenase U. H. Manjunatha, M. Dalal, M. Chatterji, D. R. Radha, S. S. Visweswariah, and V. Nagaraja PMCID: PMC115291 Unique condensation patterns of triplex DNA: physical aspects and physiological implications Rivka Goobes, Orit Cohen, and Abraham Minsky PMCID: PMC115281 Minihelix-loop RNAs: minimal structures for aminoacylation catalysts Krishna Ramaswamy, Kenneth Wei, and Hiroaki Suga PMCID: PMC115283 Mammalian Rad51C contributes to DNA cross-link resistance, sister chromatid cohesion and genomic stability Barbara C. Godthelp, Wouter W. Wiegant, Annemarie van Duijn-Goedhart, Orlando D. Schärer, Paul P. W. van Buul, Roland Kanaar, and Maßgorzata Z. Zdzienicka PMCID: PMC115287 Thymine-methyl/π interaction implicated in the sequence-dependent deformability of DNA Yoji Umezawa and Motohiro Nishio PMCID: PMC115278 Defective nucleotide excision repair in yeast hpr1 and tho2 mutants Sergio González-Barrera, Félix Prado, Richard Verhage, Jaap Brouwer, and Andrés Aguilera PMCID: PMC115280 HuD binds to three AU-rich sequences in the 3′-UTR of neuroserpin mRNA and promotes the accumulation of neuroserpin mRNA and protein Ana Cuadrado, Cristina Navarro-Yubero, Henry Furneaux, Jochen Kinter, Peter Sonderegger, and Alberto Muñoz PMCID: PMC115279 Connected gene neighborhoods in prokaryotic genomes Igor B. Rogozin, Kira S. Makarova, Janos Murvai, Eva Czabarka, Yuri I. Wolf, Roman L. Tatusov, Laszlo A. Szekely, and Eugene V. Koonin PMCID: PMC115289 Transcripts of developmentally regulated Plasmodium falciparum genes quantified by real-time RT–PCR Peter L. Blair, Adam Witney, J. David Haynes, J. Kathleen Moch, Daniel J. Carucci, and John H. Adams PMCID: PMC115288 Identification of delta helicase as the bovine homolog of HUPF1: demonstration of an interaction with the third subunit of DNA polymerase delta L. Michael Carastro, Cheng-Keat Tan, Manuel Selg, Hans-Martin Jack, Antero G. So, and Kathleen M. Downey PMCID: PMC115286 M-DNA is stabilised in G•C tracts or by incorporation of 5-fluorouracil David O. Wood, Michael J. Dinsmore, Grant A. Bare, and Jeremy S. Lee PMCID: PMC115282 Identification of nucleolin and nucleophosmin as genotoxic stress-responsive RNA-binding proteins Chonglin Yang, Dony A. Maiguel, and France Carrier PMCID: PMC115285 NAR Methods Online A reliable and efficient method for deleting operational sequences in PACs and BACs Ravi Nistala and Curt D. Sigmund PMCID: PMC115295 Commonly conserved genetic fragments revealed by genome profiling can serve as tracers of evolution Mohammed Naimuddin, Takayuki Kurazono, and Koichi Nishigaki PMCID: PMC115296 DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis David M. Hoover and Jacek Lubkowski PMCID: PMC115297 Combining chromatin immunoprecipitation and DNA footprinting: a novel method to analyze protein–DNA interactions in vivo Sung-Hae Lee Kang, Karen Vieira, and Jörg Bungert PMCID: PMC115298 High affinity nucleic acid aptamers for streptavidin incorporated into bi-specific capture ligands Abdessamad Tahiri-Alaoui, Laura Frigotto, Nick Manville, Jamal Ibrahim, Pascale Romby, and William James PMCID: PMC115299 RNA interference in mammalian cells using siRNAs synthesized with T7 RNA polymerase Olivier Donzé and Didier Picard PMCID: PMC115300 Telomere measurement by quantitative PCR Richard M. Cawthon PMCID: PMC115301 Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays Tony Yuen, Elisa Wurmbach, Robert L. Pfeffer, Barbara J. Ebersole, and Stuart C. Sealfon PMCID: PMC115302 |
