| | Articles Polyamine–nucleic acid interactions and the effects on structure in oriented DNA fibers Lorens van Dam, Nikolay Korolev, and Lars Nordenskiöld PMCID: PMC99836 Definition of the minimal viral components required for the initiation of unprimed RNA synthesis by influenza virus RNA polymerase M. T. Michael Lee, Konrad Bishop, Liz Medcalf, Debra Elton, Paul Digard, and Laurence Tiley PMCID: PMC99831 RT–PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria Josef Kuhn and Stefan Binder PMCID: PMC99824 Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction Ulrich F. Müller and H. Ulrich Göringer PMCID: PMC99830 Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein Xuemei Yuan, Natalia Davydova, Maria R. Conte, Stephen Curry, and Stephen Matthews PMCID: PMC99833 The chicken lysozyme chromatin domain contains a second, widely expressed gene Suyinn Chong, Arthur D. Riggs, and Constanze Bonifer PMCID: PMC99835 The reactivity of phosphodiester bonds within linear single-stranded oligoribonucleotides is strongly dependent on the base sequence Ulla Kaukinen, Sari Lyytikäinen, Satu Mikkola, and Harri Lönnberg PMCID: PMC99829 Functional and physical interaction between the histone methyl transferase Suv39H1 and histone deacetylases Olivier Vaute, Estelle Nicolas, Laurence Vandel, and Didier Trouche PMCID: PMC99834 A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis Kira S. Makarova, L. Aravind, Nick V. Grishin, Igor B. Rogozin, and Eugene V. Koonin PMCID: PMC99818 Contribution of downstream promoter elements to transcriptional regulation of the rice tungro bacilliform virus promoter Xiaoyuan He, Johannes Fütterer, and Thomas Hohn PMCID: PMC99825 Brownian-dynamics simulations of metal-ion binding to four-way junctions Bernd N. M. van Buuren, Thomas Hermann, Sybren S. Wijmenga, and Eric Westhof PMCID: PMC99837 Bone morphogenetic protein-2 (BMP-2) transactivates Dlx3 through Smad1 and Smad4: alternative mode for Dlx3 induction in mouse keratinocytes Geon Tae Park and Maria I. Morasso PMCID: PMC99823 De novo telomere addition to spacer sequences prior to their developmental degradation in Euplotes crassus Matthias Möllenbeck and Lawrence A. Klobutcher PMCID: PMC99826 Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity Yuji Inagaki, Christian Blouin, W. Ford Doolittle, and Andrew J. Roger PMCID: PMC99827 Mutational fingerprints of aging Martijn E. T. Dollé, Wendy K. Snyder, David B. Dunson, and Jan Vijg PMCID: PMC99828 Investigation of a conserved stacking interaction in target site recognition by the U1A protein Jerome C. Shiels, Jacob B. Tuite, Scott J. Nolan, and Anne M. Baranger PMCID: PMC99821 Allosteric inhibitors of telomerase: oligonucleotide N3′→P5′ phosphoramidates Ronald Pruzan, Krisztina Pongracz, Kimberly Gietzen, Gerald Wallweber, and Sergei Gryaznov PMCID: PMC99832 An oxidized nucleotide affects DNA replication through activation of protein kinases in Xenopus egg lysates Toshinori Kai, Rieko Matsunaga, Masami Eguchi, Hiroyuki Kamiya, Hiroshi Kasai, Motoshi Suzuki, and Shunji Izuta PMCID: PMC99820 Rolling-circle amplification under topological constraints Heiko Kuhn, Vadim V. Demidov, and Maxim D. Frank-Kamenetskii PMCID: PMC99838 Involvement of rhp23, a Schizosaccharomyces pombe homolog of the human HHR23A and Saccharomyces cerevisiae RAD23 nucleotide excision repair genes, in cell cycle control and protein ubiquitination Robert T. Elder, Xiang-qian Song, Mingzhong Chen, Kevin M. Hopkins, Howard B. Lieberman, and Yuqi Zhao PMCID: PMC99819 A critical stem–loop structure in the CR4–CR5 domain of mammalian telomerase RNA Jiunn-Liang Chen, Kay Keyer Opperman, and Carol W. Greider PMCID: PMC99822 Pyrophosphorolysis-activatable oligonucleotides may facilitate detection of rare alleles, mutation scanning and analysis of chromatin structures Qiang Liu and Steve S. Sommer PMCID: PMC99816 Acyclic and dideoxy terminator preferences denote divergent sugar recognition by archaeon and Taq DNA polymerases Andrew F. Gardner and William E. Jack PMCID: PMC99817 Two amino acid replacements change the substrate preference of DNA mismatch glycosylase Mig.MthI from T/G to A/G Yvonne N. Fondufe-Mittendorf, Christine Härer, Wilfried Kramer, and Hans-Joachim Fritz PMCID: PMC99839 NAR Methods Online Development of a novel rapid assay to assess the fidelity of DNA double-strand-break repair in human tumour cells S. J. Collis, V. K. Sangar, A. Tighe, S. A. Roberts, N. W. Clarke, J. H. Hendry, and G. P. Margison PMCID: PMC99840 PCR-mediated generation of a gene disruption construct without the use of DNA ligase and plasmid vectors Hidekazu Kuwayama, Shinji Obara, Takahiro Morio, Mariko Katoh, Hideko Urushihara, and Yoshimasa Tanaka PMCID: PMC99841 Genetic screening using the colour change of a PNA–DNA hybrid-binding cyanine dye L. Marcus Wilhelmsson, Bengt Nordén, Kaushik Mukherjee, Maria T. Dulay, and Richard N. Zare PMCID: PMC99842 An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis Stanislav L. Karsten, Vivianna M. D. Van Deerlin, Chiara Sabatti, Lisa H. Gill, and Daniel H. Geschwind PMCID: PMC99843 A new class of homogeneous nucleic acid probes based on specific displacement hybridization Qingge Li, Guoyan Luan, Qiuping Guo, and Jixuan Liang PMCID: PMC99844 A new approach to genome mapping and sequencing: slalom libraries Veronika I. Zabarovska, Rinat Z. Gizatullin, Ali N. Al-Amin, Raf Podowski, Alexei I. Protopopov, Sven Löfdahl, Claes Wahlestedt, Gösta Winberg, Vladimir I. Kashuba, Ingemar Ernberg, and Eugene R. Zabarovsky PMCID: PMC99845 Quantification of 8-oxo-guanine and guanine as the nucleobase, nucleoside and deoxynucleoside forms in human urine by high-performance liquid chromatography–electrospray tandem mass spectrometry Allan Weimann, Dorthe Belling, and Henrik E. Poulsen PMCID: PMC99846 A genetic system for direct selection of gene-positive clones during recombinational cloning in yeast Vladimir Noskov, Natalay Kouprina, Sun-Hee Leem, Maxim Koriabine, J. Carl Barrett, and Vladimir Larionov PMCID: PMC99847 High-level and high-throughput recombinant protein production by transient transfection of suspension-growing human 293-EBNA1 cells Yves Durocher, Sylvie Perret, and Amine Kamen PMCID: PMC99848 DNA microarrays with PAMAM dendritic linker systems Rüdiger Benters, Christof M. Niemeyer, Denja Drutschmann, Dietmar Blohm, and Dieter Wöhrle PMCID: PMC99849 |
