| | Articles Retinoic acid receptor α1 variants, RARα1ΔB and RARα1ΔBC, define a new class of nuclear receptor isoforms Antonio Parrado, Gilles Despouy, Radhia Kraïba, Carole Le Pogam, Stéphane Dupas, Maryline Choquette, Macarena Robledo, Jérôme Larghero, Hung Bui, Isabelle Le Gall, Cécile Rochette-Egly, Christine Chomienne, and Rose Ann Padua PMCID: PMC97588 Mode of DNA–protein interaction between the C-terminal domain of Escherichia coli RNA polymerase α subunit and T7D promoter UP element Olga N. Ozoline, Nobuyuki Fujita, and Akira Ishihama PMCID: PMC97620 Selected base sequence outside the target binding site of zinc finger protein Sp1 Makoto Nagaoka, Yasuhisa Shiraishi, and Yukio Sugiura PMCID: PMC97581 A second NAD+-dependent DNA ligase (LigB) in Escherichia coli Verl Sriskanda and Stewart Shuman PMCID: PMC97608 Uracil-DNA glycosylase-deficient yeast exhibit a mitochondrial mutator phenotype Aditi Chatterjee and Keshav K. Singh PMCID: PMC97606 RNase H mediated cleavage of RNA by cyclohexene nucleic acid (CeNA) Birgit Verbeure, Eveline Lescrinier, Jing Wang, and Piet Herdewijn PMCID: PMC97599 Structural study of DNA duplexes containing the (6–4) photoproduct by fluorescence resonance energy transfer Toshimi Mizukoshi, Takashi S. Kodama, Yoshie Fujiwara, Tadahide Furuno, Mamoru Nakanishi, and Shigenori Iwai PMCID: PMC97586 Structure-dependent reactivity of oxyfunctionalized acetophenones in the photooxidation of DNA: base oxidation and strand breaks through photolytic radical formation (spin trapping, EPR spectroscopy, transient kinetics) versus photosensitization (electron transfer, hydrogen-atom abstraction) Waldemar Adam, Markus A. Arnold, Werner M. Nau, Uwe Pischel, and Chantu R. Saha-Möller PMCID: PMC97623 A mutation in the primer grip region of HIV-1 reverse transcriptase that confers reduced fidelity of DNA synthesis Mónica Gutiérrez-Rivas and Luis Menéndez-Arias PMCID: PMC97574 The protein ORF80 from the acidophilic and thermophilic archaeon Sulfolobus islandicus binds highly site-specifically to double-stranded DNA and represents a novel type of basic leucine zipper protein Georg Lipps, Pablo Ibanez, Thomas Stroessenreuther, Katya Hekimian, and Gerhard Krauss PMCID: PMC97583 Gene expression in the developing mouse retina by EST sequencing and microarray analysis Xiuqian Mu, Sheng Zhao, Rashmi Pershad, Tzung-Fu Hsieh, Ann Scarpa, Steven W. Wang, R. Allen White, Phillip D. Beremand, Terry L. Thomas, Lin Gan, and William H. Klein PMCID: PMC97568 Transcription factor Sp3 is regulated by acetylation Harald Braun, Ronald Koop, Alexa Ertmer, Silvina Nacht, and Guntram Suske PMCID: PMC97549 All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae Catelijne A. van Beekvelt, Muriel de Graaff-Vincent, Alex W. Faber, Jan van ’t Riet, Jaap Venema, and Hendrik A. Raué PMCID: PMC97604 La autoantigen enhances translation of BiP mRNA Yoon Ki Kim, Sung Hoon Back, Jungmin Rho, Song Hee Lee, and Sung Key Jang PMCID: PMC97601 Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA Jan Wuyts, Yves Van de Peer, and Rupert De Wachter PMCID: PMC97625 Sequence organization of barley centromeres Sabina Hudakova, Wolfgang Michalek, Gernot G. Presting, Rogier ten Hoopen, Karla dos Santos, Zuzana Jasencakova, and Ingo Schubert PMCID: PMC97617 Exocyclic groups in the minor groove influence the backbone conformation of DNA Bernd Wellenzohn, Wolfgang Flader, Rudolf H. Winger, Andreas Hallbrucker, Erwin Mayer, and Klaus R. Liedl PMCID: PMC97579 Directed evolution of a recombinase for improved genomic integration at a native human sequence Christopher R. Sclimenti, Bhaskar Thyagarajan, and Michele P. Calos PMCID: PMC97615 Bypass of heterology during strand transfer by Saccharomyces cerevisiae Rad51 protein Victor F. Holmes, Kirsten R. Benjamin, Nancy J. Crisona, and Nicholas R. Cozzarelli PMCID: PMC97545 Flavones inhibit the hexameric replicative helicase RepA Hai Xu, Günter Ziegelin, Werner Schröder, Joachim Frank, Sylvia Ayora, Juan Carlos Alonso, Erich Lanka, and Wolfram Saenger PMCID: PMC97556 A protonated base pair participating in rRNA tertiary structural interactions Andriy V. Kubarenko, Petr V. Sergiev, Alexey A. Bogdanov, Richard Brimacombe, and Olga A. Dontsova PMCID: PMC97597 Effective inhibition of herpes simplex virus 1 gene expression and growth by engineered RNase P ribozyme Phong Trang, Jarone Lee, Ahmed F. Kilani, Joe Kim, and Fenyong Liu PMCID: PMC97563 Conserved RNA secondary structures in Picornaviridae genomes Christina Witwer, Susanne Rauscher, Ivo L. Hofacker, and Peter F. Stadler PMCID: PMC97546 Attachment of benzaldehyde-modified oligodeoxynucleotide probes to semicarbazide-coated glass Mikhail A. Podyminogin, Eugeny A. Lukhtanov, and Michael W. Reed PMCID: PMC97543 Destabilization of tRNA3Lys from the primer-binding site of HIV-1 genome by anti-A loop polyamide nucleotide analog Neerja Kaushik, Tanaji T. Talele, Raymond Monel, Paul Palumbo, and Virendra N. Pandey PMCID: PMC97570 An architectural role of the Escherichia coli chromatin protein FIS in organising DNA Robert Schneider, Rudolf Lurz, Gerhild Lüder, Carolin Tolksdorf, Andrew Travers, and Georgi Muskhelishvili PMCID: PMC97572 An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5′- and 3′-termini Fatima D. Jones, Sean P. Ryder, and Scott A. Strobel PMCID: PMC97611 Effects of polyamines on the thermal stability and formation kinetics of DNA duplexes with abnormal structure Ming-Hon Hou, Shwu-Bin Lin, Jeu-Ming P. Yuann, Wei-Chen Lin, Andrew H.-J. Wang, and Lou-sing Kan PMCID: PMC97540 NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop Uma Nagaswamy, Xiaolian Gao, Susan A. Martinis, and George E. Fox PMCID: PMC97551 Intracellular generation of single-stranded DNA for chromosomal triplex formation and induced recombination Hirock J. Datta and Peter M. Glazer PMCID: PMC97609 Two thyroid hormone-mediated gene expression patterns in vivo identified by cDNA expression arrays in rat Joachim M. Weitzel, Christiane Radtke, and Hans J. Seitz PMCID: PMC97559 Effect of chromosomal locus, GC content and length of homology on PCR-mediated targeted gene replacement in Saccharomyces Misa Gray and Saul M. Honigberg PMCID: PMC97614 The effect of surface probe density on DNA hybridization Alexander W. Peterson, Richard J. Heaton, and Rosina M. Georgiadis PMCID: PMC97561 The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the rhizosphere of alfalfa Susanne Schneiker, Mathias Keller, Marcus Dröge, Erich Lanka, Alfred Pühler, and Werner Selbitschka PMCID: PMC97592 -CH2- lengthening of the internucleotide linkage in the ApA dimer can improve its conformational compatibility with its natural polynucleotide counterpart J. Hanu, I. Barvík, K. Ruszová-Chmelová, J. ŠtÆpánek, P.-Y. Turpin, J. Bok, I. Rosenberg, and M. Petrová-Endová PMCID: PMC97576 Comparative analysis of FUR regulons in gamma-proteobacteria E. M. Panina, A. A. Mironov, and M. S. Gelfand PMCID: PMC97565 Activation of p53 protein by telomeric (TTAGGG)n repeats Michael Milyavsky, Avishai Mimran, Shai Senderovich, Irit Zurer, Neta Erez, Igor Shats, Naomi Goldfinger, Irun Cohen, and Varda Rotter PMCID: PMC97590 The trypanosome homolog of human p32 interacts with RBP16 and stimulates its gRNA binding activity Mark L. Hayman, Melissa M. Miller, Devin M. Chandler, Christopher C. Goulah, and Laurie K. Read PMCID: PMC97595 Constraints on reinitiation of translation in mammals Marilyn Kozak PMCID: PMC97554 NAR Methods Online FspAI, a unique type II restriction endonuclease that recognizes the octanucleotide sequence 5′-RTGC↓GCAY-3′ A. Kesminiene, Z. Maneliene, J. Vitkute, M. Petruyte, and A. Janulaitis PMCID: PMC97628 Genotyping by apyrase-mediated allele-specific extension Afshin Ahmadian, Baback Gharizadeh, Deirdre O’Meara, Jacob Odeberg, and Joakim Lundeberg PMCID: PMC97629 Nucleic acid fragmentation on the millisecond timescale using a conventional X-ray rotating anode source: application to protein–DNA footprinting Arnon Henn, Jacob Halfon, Itai Kela, Itzhak Orion, and Irit Sagi PMCID: PMC97631 A novel technique for the identification of CpG islands exhibiting altered methylation patterns (ICEAMP) Graham J. R. Brock, Tim Hui-Ming Huang, Chuan-Mu Chen, and Keith J. Johnson PMCID: PMC97633 |
