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Volume 13(3);  March 2004
Articles
Nucleotide-induced switch in oligomerization of the AAA+ ATPase ClpB
Vladimir Akoev, Edward P. Gogol, Micheal E. Barnett, and Michal Zolkiewski
Protein Sci. 2004 March; 13(3): 567–574. doi: 10.1110/ps.03422604.
PMCID: PMC1828688
The role of phosphagen specificity loops in arginine kinase
Arezki Azzi, Shawn A. Clark, W. Ross Ellington, and Michael S. Chapman
Protein Sci. 2004 March; 13(3): 575–585. doi: 10.1110/ps.03428304.
PMCID: PMC2286741
The peculiar nature of unfolding of the human prion protein
Ilia V. Baskakov, Giuseppe Legname, Zygmunt Gryczynski, and Stanley B. Prusiner
Protein Sci. 2004 March; 13(3): 586–595. doi: 10.1110/ps.03457204.
PMCID: PMC2286731
Analysis and prediction of affinity of TAP binding peptides using cascade SVM
Manoj Bhasin and G.P.S. Raghava
Protein Sci. 2004 March; 13(3): 596–607. doi: 10.1110/ps.03373104.
PMCID: PMC2286721
Rapid evolution in conformational space: A study of loop regions in a ubiquitous GTP binding domain
Christian Blouin, Davin Butt, and Andrew James Roger
Protein Sci. 2004 March; 13(3): 608–616. doi: 10.1110/ps.03299804.
PMCID: PMC2286719
Comparison of BRCT domains of BRCA1 and 53BP1: A biophysical analysis
Caroline M.S. Ekblad, Assaf Friedler, Dmitry Veprintsev, Richard L. Weinberg, and Laura S. Itzhaki
Protein Sci. 2004 March; 13(3): 617–625. doi: 10.1110/ps.03461404.
PMCID: PMC2286730
Directed discovery of bivalent peptide ligands to an SH3 domain
Monique R. Ferguson, Xiuzhen Fan, Munia Mukherjee, Jinquan Luo, Raza Khan, Josephine C. Ferreon, Vincent J. Hilser, Robert E. Shope, and Robert O. Fox
Protein Sci. 2004 March; 13(3): 626–632. doi: 10.1110/ps.03470504.
PMCID: PMC2286729
Steric restrictions in protein folding: An α-helix cannot be followed by a contiguous β-strand
Nicholas C. Fitzkee and George D. Rose
Protein Sci. 2004 March; 13(3): 633–639. doi: 10.1110/ps.03503304.
PMCID: PMC2286724
Using lanthanide ions to align troponin complexes in solution: Order of lanthanide occupancy in cardiac troponin C
Grant L. Gay, Darrin A. Lindhout, and Brian D. Sykes
Protein Sci. 2004 March; 13(3): 640–651. doi: 10.1110/ps.03412704.
PMCID: PMC2286735
The PRESAT-vector: Asymmetric T-vector for high-throughput screening of soluble protein domains for structural proteomics
Natsuko Goda, Takeshi Tenno, Hirotoshi Takasu, Hidekazu Hiroaki, and Masahiro Shirakawa
Protein Sci. 2004 March; 13(3): 652–658. doi: 10.1110/ps.03439004.
PMCID: PMC2286733
Structure of the archaeal translation initiation factor aIF2β from Methanobacterium thermoautotrophicum: Implications for translation initiation
Pablo Gutiérrez, Michael J. Osborne, Nadeem Siddiqui, Jean-François Trempe, Cheryl Arrowsmith, and Kalle Gehring
Protein Sci. 2004 March; 13(3): 659–667. doi: 10.1110/ps.03506604.
PMCID: PMC2286745
Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis and implications for its quaternary structure and tRNA binding
Lene S. Harlow, Anders Kadziola, Kaj Frank Jensen, and Sine Larsen
Protein Sci. 2004 March; 13(3): 668–677. doi: 10.1110/ps.03477004.
PMCID: PMC2286726
Laser light-scattering evidence for an altered association of βB1-crystallin deamidated in the connecting peptide
Michael J. Harms, Philip A. Wilmarth, Deborah M. Kapfer, Eric A. Steel, Larry L. David, Hans Peter Bächinger, and Kirsten J. Lampi
Protein Sci. 2004 March; 13(3): 678–686. doi: 10.1110/ps.03427504.
PMCID: PMC2286738
Enterococcus faecalis mevalonate kinase
Matija Hedl and Victor W. Rodwell
Protein Sci. 2004 March; 13(3): 687–693. doi: 10.1110/ps.03367504.
PMCID: PMC2286734
Retarded protein folding of deficient human α1-antitrypsin D256V and L41P variants
Chan-Hun Jung, Yu-Ran Na, and Hana Im
Protein Sci. 2004 March; 13(3): 694–702. doi: 10.1110/ps.03356604.
PMCID: PMC2286720
Lead optimization of antifungal peptides with 3D NMR structures analysis
Céline Landon, Florent Barbault, Michèle Legrain, Laure Menin, Marc Guenneugues, Valérie Schott, Françoise Vovelle, and Jean-Luc Dimarcq
Protein Sci. 2004 March; 13(3): 703–713. doi: 10.1110/ps.03404404.
PMCID: PMC2286723
Defining the minimum size of a hydrophobic cluster in two-stranded α-helical coiled-coils: Effects on protein stability
Stephen M. Lu and Robert S. Hodges
Protein Sci. 2004 March; 13(3): 714–726. doi: 10.1110/ps.03443204.
PMCID: PMC2286740
The solution structure of the pH-induced monomer of dynein light-chain LC8 from Drosophila
Moses Makokha, Yuanpeng Janet Huang, Gaetano Montelione, Arthur S. Edison, and Elisar Barbar
Protein Sci. 2004 March; 13(3): 727–734. doi: 10.1110/ps.03462204.
PMCID: PMC2286742
Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library
Ronald W. Peterson, P. Leslie Dutton, and A. Joshua Wand
Protein Sci. 2004 March; 13(3): 735–751. doi: 10.1110/ps.03250104.
PMCID: PMC2286725
Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins
Susanne Moelbert, Eldon Emberly, and Chao Tang
Protein Sci. 2004 March; 13(3): 752–762. doi: 10.1110/ps.03431704.
PMCID: PMC2286732
Directed evolution relieves product inhibition and confers in vivo function to a rationally designed tyrosine aminotransferase
Steven C. Rothman, Mark Voorhies, and Jack F. Kirsch
Protein Sci. 2004 March; 13(3): 763–772. doi: 10.1110/ps.03117204.
PMCID: PMC2286728
Sensitivity and selectivity in protein structure comparison
Michael L. Sierk and William R. Pearson
Protein Sci. 2004 March; 13(3): 773–785. doi: 10.1110/ps.03328504.
PMCID: PMC2286722
Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction—The case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway
Sergey Sikora and Adam Godzik
Protein Sci. 2004 March; 13(3): 786–796. doi: 10.1110/ps.03454904.
PMCID: PMC2286736
Increase in the conformational flexibility of β2-microglobulin upon copper binding: A possible role for copper in dialysis-related amyloidosis
James Villanueva, Masaru Hoshino, Hidenori Katou, József Kardos, Kazuhiro Hasegawa, Hironobu Naiki, and Yuji Goto
Protein Sci. 2004 March; 13(3): 797–809. doi: 10.1110/ps.03445704.
PMCID: PMC2286743
Oligomerization of hydrophobin SC3 in solution: From soluble state to self-assembly
Xiaoqin Wang, Johanna F. Graveland-Bikker, Cornelis G. De Kruif, and George T. Robillard
Protein Sci. 2004 March; 13(3): 810–821. doi: 10.1110/ps.03367304.
PMCID: PMC2286737
Cooperativity in two-state protein folding kinetics
Thomas R. Weikl, Matteo Palassini, and Ken A. Dill
Protein Sci. 2004 March; 13(3): 822–829. doi: 10.1110/ps.03403604.
PMCID: PMC2286727
Dimethyl sulfoxide at 2.5% (v/v) alters the structural cooperativity and unfolding mechanism of dimeric bacterial NAD+ synthetase
Zhengrong W. Yang, Susan W. Tendian, W. Michael Carson, Wayne J. Brouillette, Lawrence J. Delucas, and Christie G. Brouillette
Protein Sci. 2004 March; 13(3): 830–841. doi: 10.1110/ps.03330104.
PMCID: PMC2286739
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