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Volume 15(5);  May 2006
Articles
Affinity enhancement of an in vivo matured therapeutic antibody using structure-based computational design
Louis A. Clark, P. Ann Boriack-Sjodin, John Eldredge, Christopher Fitch, Bethany Friedman, Karl J.M. Hanf, Matthew Jarpe, Stefano F. Liparoto, You Li, Alexey Lugovskoy, Stephan Miller, Mia Rushe, Woody Sherman, Kenneth Simon, and Herman Van Vlijmen
Protein Sci. 2006 May; 15(5): 949–960. doi: 10.1110/ps.052030506.
PMCID: PMC2242497
Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination
Linda Columbus, Jan Lipfert, Heath Klock, Ian Millett, Sebastian Doniach, and Scott A. Lesley
Protein Sci. 2006 May; 15(5): 961–975. doi: 10.1110/ps.051874706.
PMCID: PMC2242514
3-Nitrotyrosine as a spectroscopic probe for investigating protein protein interactions
Vincenzo De Filippis, Roberta Frasson, and Angelo Fontana
Protein Sci. 2006 May; 15(5): 976–986. doi: 10.1110/ps.051957006.
PMCID: PMC2242503
Comparison of crystal structures of human androgen receptor ligand-binding domain complexed with various agonists reveals molecular determinants responsible for binding affinity
Karine Pereira de Jésus-Tran, Pierre-Luc Côté, Line Cantin, Jonathan Blanchet, Fernand Labrie, and Rock Breton
Protein Sci. 2006 May; 15(5): 987–999. doi: 10.1110/ps.051905906.
PMCID: PMC2242507
The contribution of the residues from the main hydrophobic core of ribonuclease A to its pressure-folding transition state
Josep Font, Antoni Benito, Reinhard Lange, Marc Ribó, and Maria Vilanova
Protein Sci. 2006 May; 15(5): 1000–1009. doi: 10.1110/ps.052050306.
PMCID: PMC2242501
Solution structure of the antifreeze-like domain of human sialic acid synthase
Toshiyuki Hamada, Yoko Ito, Takamasa Abe, Fumiaki Hayashi, Peter Güntert, Makoto Inoue, Takanori Kigawa, Takaho Terada, Mikako Shirouzu, Mayumi Yoshida, Akiko Tanaka, Sumio Sugano, Shigeyuki Yokoyama, and Hiroshi Hirota
Protein Sci. 2006 May; 15(5): 1010–1016. doi: 10.1110/ps.051700406.
PMCID: PMC2242509
An algorithm for predicting protein–protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements
Jemima Hoskins, Simon Lovell, and Tom L. Blundell
Protein Sci. 2006 May; 15(5): 1017–1029. doi: 10.1110/ps.051589106.
PMCID: PMC2242518
Solution structure of Asl1650, an acyl carrier protein from Anabaena sp. PCC 7120 with a variant phosphopantetheinylation-site sequence
Margaret A. Johnson, Wolfgang Peti, Torsten Herrmann, Ian A. Wilson, and Kurt Wüthrich
Protein Sci. 2006 May; 15(5): 1030–1041. doi: 10.1110/ps.051964606.
PMCID: PMC2242512
The C-terminal domain of the transcriptional corepressor CtBP is intrinsically unstructured
Marco Nardini, Dmitri Svergun, Peter V. Konarev, Stefania Spanò, Mauro Fasano, Chiara Bracco, Alessandra Pesce, Alessandra Donadini, Claudia Cericola, Francesco Secundo, Alberto Luini, Daniela Corda, and Martino Bolognesi
Protein Sci. 2006 May; 15(5): 1042–1050. doi: 10.1110/ps.062115406.
PMCID: PMC2242513
Src kinase activation: A switched electrostatic network
Elif Ozkirimli and Carol Beth Post
Protein Sci. 2006 May; 15(5): 1051–1062. doi: 10.1110/ps.051999206.
PMCID: PMC2242506
Modulation of protein aggregation by polyethylene glycol conjugation: GCSF as a case study
Rahul S. Rajan, Tiansheng Li, Mohini Aras, Christopher Sloey, Weston Sutherland, Hiromi Arai, Robert Briddell, Olaf Kinstler, Alexis M.K. Lueras, Yu Zhang, Heather Yeghnazar, Michael Treuheit, and David N. Brems
Protein Sci. 2006 May; 15(5): 1063–1075. doi: 10.1110/ps.052004006.
PMCID: PMC2242524
Modular organization of FDH: Exploring the basis of hydrolase catalysis
Steven N. Reuland, Alexander P. Vlasov, and Sergey A. Krupenko
Protein Sci. 2006 May; 15(5): 1076–1084. doi: 10.1110/ps.052062806.
PMCID: PMC2242502
Sequential reorganization of β-sheet topology by insertion of a single strand
Martin Sagermann, Walter A. Baase, and Brian W. Matthews
Protein Sci. 2006 May; 15(5): 1085–1092. doi: 10.1110/ps.052018006.
PMCID: PMC2242519
Calorimetric and structural studies of the nitric oxide carrier S-nitrosoglutathione bound to human glutathione transferase P1-1
Ramiro Téllez-Sanz, Eleonora Cesareo, Marzia Nuccetelli, Ana M. Aguilera, Carmen Barón, Lorien J. Parker, Julian J. Adams, Craig J. Morton, Mario Lo Bello, Michael W. Parker, and Luis García-Fuentes
Protein Sci. 2006 May; 15(5): 1093–1105. doi: 10.1110/ps.052055206.
PMCID: PMC2242504
Tunnel plasticity and quaternary structural integrity of a pentameric protein ring
Kenneth J. Woycechowsky, Florian P. Seebeck, and Donald Hilvert
Protein Sci. 2006 May; 15(5): 1106–1114. doi: 10.1110/ps.052044606.
PMCID: PMC2242520
Enhancing functional production of G protein-coupled receptors in Pichia pastoris to levels required for structural studies via a single expression screen
Nicolas André, Nadia Cherouati, Cécile Prual, Tania Steffan, Gabrielle Zeder-Lutz, Thierry Magnin, Franc Pattus, Hartmut Michel, Renaud Wagner, and Christoph Reinhart
Protein Sci. 2006 May; 15(5): 1115–1126. doi: 10.1110/ps.062098206.
PMCID: PMC2242496
Secondary structure, orientation, and oligomerization of phospholemman, a cardiac transmembrane protein
Andrew J. Beevers and Andreas Kukol
Protein Sci. 2006 May; 15(5): 1127–1132. doi: 10.1110/ps.051899406.
PMCID: PMC2242498
Inhibition of insulin fibrillogenesis with targeted peptides
Todd J. Gibson and Regina M. Murphy
Protein Sci. 2006 May; 15(5): 1133–1141. doi: 10.1110/ps.051879606.
PMCID: PMC2242521
Structure and dynamics of the epidermal growth factor receptor C-terminal phosphorylation domain
Nam Y. Lee, Theodore L. Hazlett, and John G. Koland
Protein Sci. 2006 May; 15(5): 1142–1152. doi: 10.1110/ps.052045306.
PMCID: PMC2242510
Stoichiometry of lipid interactions with transmembrane proteins—Deduced from the 3D structures
Tibor Páli, Denys Bashtovyy, and Derek Marsh
Protein Sci. 2006 May; 15(5): 1153–1161. doi: 10.1110/ps.052021406.
PMCID: PMC2242517
Secondary structure and dynamics of micelle bound β- and γ-synuclein
Yoon-hui Sung and David Eliezer
Protein Sci. 2006 May; 15(5): 1162–1174. doi: 10.1110/ps.051803606.
PMCID: PMC2242515
Probing the collective vibrational dynamics of a protein in liquid water by terahertz absorption spectroscopy
Jing Xu, Kevin W. Plaxco, and S. James Allen
Protein Sci. 2006 May; 15(5): 1175–1181. doi: 10.1110/ps.062073506.
PMCID: PMC2242499
Protein Structure Reports
Structure of the Sir3 protein bromo adjacent homology (BAH) domain from S. cerevisiae at 1.95 Å resolution
Zhonggang Hou, John R. Danzer, Catherine A. Fox, and James L. Keck
Protein Sci. 2006 May; 15(5): 1182–1186. doi: 10.1110/ps.052061006.
PMCID: PMC2242508
Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 Å resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD
Kaori Ito, Ryoichi Arai, Emiko Fusatomi, Tomomi Kamo-Uchikubo, Shin-ichi Kawaguchi, Ryogo Akasaka, Takaho Terada, Seiki Kuramitsu, Mikako Shirouzu, and Shigeyuki Yokoyama
Protein Sci. 2006 May; 15(5): 1187–1192. doi: 10.1110/ps.062148506.
PMCID: PMC2242516
For the Record
Ligand binding by TPR domains
Aitziber L. Cortajarena and Lynne Regan
Protein Sci. 2006 May; 15(5): 1193–1198. doi: 10.1110/ps.062092506.
PMCID: PMC2242500
Crystal structure of human peptidoglycan recognition protein Iα bound to a muramyl pentapeptide from Gram-positive bacteria
Rongjin Guan, Patrick H. Brown, Chittoor P. Swaminathan, Abhijit Roychowdhury, Geert-Jan Boons, and Roy A. Mariuzza
Protein Sci. 2006 May; 15(5): 1199–1206. doi: 10.1110/ps.062077606.
PMCID: PMC2242522
The IclR family of transcriptional activators and repressors can be defined by a single profile
Tino Krell, Antonio Jesús Molina-Henares, and Juan Luis Ramos
Protein Sci. 2006 May; 15(5): 1207–1213. doi: 10.1110/ps.051857206.
PMCID: PMC2242505
pK values of the ionizable groups of proteins
Richard L. Thurlkill, Gerald R. Grimsley, J. Martin Scholtz, and C. Nick Pace
Protein Sci. 2006 May; 15(5): 1214–1218. doi: 10.1110/ps.051840806.
PMCID: PMC2242523
Award Address
2005 Emil Thomas Kaiser Award
Ronald T. Raines
Protein Sci. 2006 May; 15(5): 1219–1225. doi: 10.1110/ps.062139406.
PMCID: PMC2242511
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