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Volume 16(8);  August 2007
Accelerated Communication
Building native protein conformation from NMR backbone chemical shifts using Monte Carlo fragment assembly
Haipeng Gong, Yang Shen, and George D. Rose
Protein Sci. 2007 August; 16(8): 1515–1521. doi: 10.1110/ps.072988407.
PMCID: PMC2203357
Articles
Specific reactions of S-nitrosothiols with cysteine hydrolases: A comparative study between dimethylargininase-1 and CTP synthetase
Oliver Braun, Markus Knipp, Serge Chesnov, and Milan Vašák
Protein Sci. 2007 August; 16(8): 1522–1534. doi: 10.1110/ps.062718507.
PMCID: PMC2203367
Discovery of antibacterial cyclic peptides that inhibit the ClpXP protease
Lin Cheng, Todd A. Naumann, Alexander R. Horswill, Sue-Jean Hong, Bryan J. Venters, John W. Tomsho, Stephen J. Benkovic, and Kenneth C. Keiler
Protein Sci. 2007 August; 16(8): 1535–1542. doi: 10.1110/ps.072933007.
PMCID: PMC2203360
Domain folding and flexibility of Escherichia coli FtsZ determined by tryptophan site-directed mutagenesis
Rodrigo Díaz-Espinoza, Andrea P. Garcés, José J. Arbildua, Felipe Montecinos, Juan E. Brunet, Rosalba Lagos, and Octavio Monasterio
Protein Sci. 2007 August; 16(8): 1543–1556. doi: 10.1110/ps.072807607.
PMCID: PMC2203363
Local quality assessment in homology models using statistical potentials and support vector machines
Marc Fasnacht, Jiang Zhu, and Barry Honig
Protein Sci. 2007 August; 16(8): 1557–1568. doi: 10.1110/ps.072856307.
PMCID: PMC2203356
Toward rational protein crystallization: A Web server for the design of crystallizable protein variants
Lukasz Goldschmidt, David R. Cooper, Zygmunt S. Derewenda, and David Eisenberg
Protein Sci. 2007 August; 16(8): 1569–1576. doi: 10.1110/ps.072914007.
PMCID: PMC2203352
Solution structure of the zinc finger HIT domain in protein FON
Fahu He, Takashi Umehara, Kengo Tsuda, Makoto Inoue, Takanori Kigawa, Takayoshi Matsuda, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takaho Terada, Mikako Shirouzu, Akiko Tanaka, Sumio Sugano, Yutaka Muto, and Shigeyuki Yokoyama
Protein Sci. 2007 August; 16(8): 1577–1587. doi: 10.1110/ps.062635107.
PMCID: PMC2203373
Reactivation of methionine synthase from Thermotoga maritima (TM0268) requires the downstream gene product TM0269
Sha Huang, Gail Romanchuk, Katherine Pattridge, Scott A. Lesley, Ian A. Wilson, Rowena G. Matthews, and Martha Ludwig
Protein Sci. 2007 August; 16(8): 1588–1595. doi: 10.1110/ps.072936307.
PMCID: PMC2203375
Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12–36) in water consisting of random-structural, β-structural, and helical clusters
Jinzen Ikebe, Narutoshi Kamiya, Jun-Ichi Ito, Heisaburo Shindo, and Junichi Higo
Protein Sci. 2007 August; 16(8): 1596–1608. doi: 10.1110/ps.062721907.
PMCID: PMC2203368
Genetic selection reveals the role of a buried, conserved polar residue
R. Jeremy Johnson, Shawn R. Lin, and Ronald T. Raines
Protein Sci. 2007 August; 16(8): 1609–1616. doi: 10.1110/ps.072938907.
PMCID: PMC2203362
Probing mechanisms of resistance to the tuberculosis drug isoniazid: Conformational changes caused by inhibition of InhA, the enoyl reductase from Mycobacterium tuberculosis
Nicole A. Kruh, Richa Rawat, Béla P. Ruzsicska, and Peter J. Tonge
Protein Sci. 2007 August; 16(8): 1617–1627. doi: 10.1110/ps.062749007.
PMCID: PMC2203378
The structure of receptor-associated protein (RAP)
Donghan Lee, Joseph D. Walsh, Molly Migliorini, Ping Yu, Tao Cai, Charles D. Schwieters, Susan Krueger, Dudley K. Strickland, and Yun-Xing Wang
Protein Sci. 2007 August; 16(8): 1628–1640. doi: 10.1110/ps.072865407.
PMCID: PMC2203372
Human embryonic, fetal, and adult hemoglobins have different subunit interface strengths. Correlation with lifespan in the red cell
Lois R. Manning, J. Eric Russell, Julio C. Padovan, Brian T. Chait, Anthony Popowicz, Robert S. Manning, and James M. Manning
Protein Sci. 2007 August; 16(8): 1641–1658. doi: 10.1110/ps.072891007.
PMCID: PMC2203358
Specific interactions of serpins in their native forms attenuate their conformational transitions
Yu-Ran Na and Hana Im
Protein Sci. 2007 August; 16(8): 1659–1666. doi: 10.1110/ps.072838107.
PMCID: PMC2203359
The role of protein homochirality in shaping the energy landscape of folding
Vikas Nanda, Aina Andrianarijaona, and Chitra Narayanan
Protein Sci. 2007 August; 16(8): 1667–1675. doi: 10.1110/ps.072867007.
PMCID: PMC2203351
The solution structure of ParD, the antidote of the ParDE toxin–antitoxin module, provides the structural basis for DNA and toxin binding
Monika Oberer, Klaus Zangger, Karl Gruber, and Walter Keller
Protein Sci. 2007 August; 16(8): 1676–1688. doi: 10.1110/ps.062680707.
PMCID: PMC2203376
A single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase
Dashuang Shi, Xiaolin Yu, Juan Cabrera-Luque, Tony Y. Chen, Lauren Roth, Hiroki Morizono, Norma M. Allewell, and Mendel Tuchman
Protein Sci. 2007 August; 16(8): 1689–1699. doi: 10.1110/ps.072919907.
PMCID: PMC2203365
Effect of Asp69 and Arg310 on the pK of His68, a key catalytic residue of adenylosuccinate lyase
Sharmila Sivendran, Mark L. Segall, Pumtiwitt C. Rancy, and Roberta F. Colman
Protein Sci. 2007 August; 16(8): 1700–1707. doi: 10.1110/ps.072927207.
PMCID: PMC2203377
DosT and DevS are oxygen-switched kinases in Mycobacterium tuberculosis
Eduardo Henrique Silva Sousa, Jason Robert Tuckerman, Gonzalo Gonzalez, and Marie-Alda Gilles-Gonzalez
Protein Sci. 2007 August; 16(8): 1708–1719. doi: 10.1110/ps.072897707.
PMCID: PMC2203369
Physical-chemical determinants of turn conformations in globular proteins
Timothy O. Street, Nicholas C. Fitzkee, Lauren L. Perskie, and George D. Rose
Protein Sci. 2007 August; 16(8): 1720–1727. doi: 10.1110/ps.072898507.
PMCID: PMC2203374
Probing nonnucleoside inhibitor-induced active-site distortion in HIV-1 reverse transcriptase by transient kinetic analyses
Qing Xia, Jessica Radzio, Karen S. Anderson, and Nicolas Sluis-Cremer
Protein Sci. 2007 August; 16(8): 1728–1737. doi: 10.1110/ps.072829007.
PMCID: PMC2203366
Structural and functional analysis of the ligand specificity of the HtrA2/Omi PDZ domain
Yingnan Zhang, Brent A. Appleton, Ping Wu, Christian Wiesmann, and Sachdev S. Sidhu
Protein Sci. 2007 August; 16(8): 1738–1750. doi: 10.1110/ps.072833207.
PMCID: PMC2203379
Cleavage of recombinant proteins at poly-His sequences by Co(II) and Cu(II)
Martina Andberg, Jussi Jäntti, Sara Heilimo, Päivi Pihkala, Arja Paananen, Ari M.P. Koskinen, Hans Söderlund, and Markus B. Linder
Protein Sci. 2007 August; 16(8): 1751–1761. doi: 10.1110/ps.072846407.
PMCID: PMC2203371
Orphan nuclear receptor NGFI-B forms dimers with nonclassical interface
Marcos R. Calgaro, Mario de Oliveira Neto, Ana Carolina M. Figueira, Maria A.M. Santos, Rodrigo V. Portugal, Carolina A. Guzzi, Daniel M. Saidemberg, Lucas Bleicher, Javier Vernal, Pablo Fernandez, Hernán Terenzi, Mario Sergio Palma, and Igor Polikarpov
Protein Sci. 2007 August; 16(8): 1762–1772. doi: 10.1110/ps.062692207.
PMCID: PMC2203355
FR258900, a potential anti-hyperglycemic drug, binds at the allosteric site of glycogen phosphorylase
Costas Tiraidis, Kyra-Melinda Alexacou, Spyros E. Zographos, Demetres D. Leonidas, Thanasis Gimisis, and Nikos G. Oikonomakos
Protein Sci. 2007 August; 16(8): 1773–1782. doi: 10.1110/ps.072925607.
PMCID: PMC2203354
Protein Structure Reports
Structure in an extreme environment: NMR at high salt
Bulent Binbuga, Arezue F.B. Boroujerdi, and John K. Young
Protein Sci. 2007 August; 16(8): 1783–1787. doi: 10.1110/ps.072950407.
PMCID: PMC2203353
Solution structure of the general transcription factor 2I domain in mouse TFII-I protein
Yukiko Doi-Katayama, Fumiaki Hayashi, Makoto Inoue, Takashi Yabuki, Masaaki Aoki, Eiko Seki, Takayoshi Matsuda, Takanori Kigawa, Mayumi Yoshida, Mikako Shirouzu, Takaho Terada, Yoshihide Hayashizaki, Shigeyuki Yokoyama, and Hiroshi Hirota
Protein Sci. 2007 August; 16(8): 1788–1792. doi: 10.1110/ps.072792007.
PMCID: PMC2203370
For the Record
Mutations that mimic phosphorylation of the HIV-1 matrix protein do not perturb the myristyl switch
Jamil S. Saad, Andrew Kim, Ruba H. Ghanam, Amanda K. Dalton, Volker M. Vogt, Zhibin Wu, Wuyuan Lu, and Michael F. Summers
Protein Sci. 2007 August; 16(8): 1793–1797. doi: 10.1110/ps.072987607.
PMCID: PMC2203364
Correction
CORRECTION
Protein Sci. 2007 August; 16(8): 1798.
PMCID: PMC2203361
Corrects: CORRECTION. Protein Sci. 2007 August; 16(8): 1798.
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