| | Articles Repair of triplex-directed DNA alkylation by nucleotide excision repair Amy Ziemba, L. Chris Derosier, Russell Methvin, Chun-Yan Song, Eric Clary, Wendy Kahn, David Milesi, Vladimir Gorn, Mike Reed, and Scot Ebbinghaus PMCID: PMC60196 Purification and functional characterization of p16, the ATPase of the bacteriophage Φ29 packaging machinery Borja Ibarra, José María Valpuesta, and José L. Carrascosa PMCID: PMC60195 SOX7 transcription factor: sequence, chromosomal localisation, expression, transactivation and interference with Wnt signalling Wafaa Takash, Joaquin Cañizares, Nathalie Bonneaud, Francis Poulat, Marie-Geneviève Mattéi, Philippe Jay, and Philippe Berta PMCID: PMC60197 Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2′-fluoro-ANA/RNA and DNA/RNA hybrids Alexei Yu. Denisov, Anne M. Noronha, Christopher J. Wilds, Jean-François Trempe, Richard T. Pon, Kalle Gehring, and Masad J. Damha PMCID: PMC60200 On the molecular discrimination between adenine and guanine by proteins Irene Nobeli, Roman A. Laskowski, William S. J. Valdar, and Janet M. Thornton PMCID: PMC60199 Identification of the first eubacterial endonuclease coded by an intein allele in the pps1 gene of mycobacteria Isabelle Saves, Fabrice Westrelin, Mamadou Daffé, and Jean-Michel Masson PMCID: PMC60189 The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes Lars O. Baumbusch, Tage Thorstensen, Veiko Krauss, Andreas Fischer, Kathrin Naumann, Reza Assalkhou, Ingo Schulz, Gunter Reuter, and Reidunn B. Aalen PMCID: PMC60187 In vitro 3′-end endonucleolytic processing defect in a human mitochondrial tRNASer(UCN) precursor with the U7445C substitution, which causes non-syndromic deafness Louis Levinger, Obasanjo Jacobs, and Melissa James PMCID: PMC60182 Inhibition of CHOP translation by a peptide encoded by an open reading frame localized in the chop 5′UTR Céline Jousse, Alain Bruhat, Valérie Carraro, Fumihiko Urano, Marc Ferrara, David Ron, and Pierre Fafournoux PMCID: PMC60176 Overexpression of human RAD51 and RAD52 reduces double-strand break-induced homologous recombination in mammalian cells Perry M. Kim, Chris Allen, Brant M. Wagener, Zhiyuan Shen, and Jac A. Nickoloff PMCID: PMC60192 IL-1 induces collagenase-3 (MMP-13) promoter activity in stably transfected chondrocytic cells: requirement for Runx-2 and activation by p38 MAPK and JNK pathways John A. Mengshol, Matthew P. Vincenti, and Constance E. Brinckerhoff PMCID: PMC60184 GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags Claudio Varotto, Erik Richly, Francesco Salamini, and Dario Leister PMCID: PMC60177 Direct association of Bloom’s syndrome gene product with the human mismatch repair protein MLH1 Graziella Pedrazzi, Claudia Perrera, Heiko Blaser, Patrick Kuster, Giancarlo Marra, Sally L. Davies, Gi-Hyuck Ryu, Raimundo Freire, Ian D. Hickson, Josef Jiricny, and Igor Stagljar PMCID: PMC60193 Transgene-mediated post-transcriptional gene silencing is inhibited by 3′ non-coding sequences in Paramecium Angélique Galvani and Linda Sperling PMCID: PMC60190 Strain-specific genes of Helicobacter pylori: distribution, function and dynamics Paul J. Janssen, Benjamin Audit, and Christos A. Ouzounis PMCID: PMC60179 Hypermutability at a poly(A/T) tract in the human germline Andrea L. Bacon, Malcolm G. Dunlop, and Susan M. Farrington PMCID: PMC60178 Quantitative amplification of single-stranded DNA (QAOS) demonstrates that cdc13-1 mutants generate ssDNA in a telomere to centromere direction Claire Booth, Elen Griffith, Gerard Brady, and David Lydall PMCID: PMC60175 Isolation and characterization of the activated B-cell factor 1 homolog in Caenorhabditis elegans Laura Nguyen, June Round, Ryan O’Connell, Paul Geurts, Melanie Funes-Duran, Jerelyn Wong, Gregg Jongeward, and Craig A. Vierra PMCID: PMC60183 Altering the GTP binding site of the DNA/RNA-binding protein, Translin/TB-RBP, decreases RNA binding and may create a dominant negative phenotype Vargheese M. Chennathukuzhi, Yasuyuki Kurihara, Jeffrey D. Bray, Juxiang Yang, and Norman B. Hecht PMCID: PMC60198 Replication intermediate analysis confirms that chromosomal replication origin initiates from an unusual intergenic region in Caulobacter crescentus Ann Karen C. Brassinga and Gregory T. Marczynski PMCID: PMC60194 5-Methylcytosine DNA glycosylase participates in the genome-wide loss of DNA methylation occurring during mouse myoblast differentiation Jean-Pierre Jost, Edward J. Oakeley, Bing Zhu, Don Benjamin, Stéphane Thiry, Michel Siegmann, and Yan-Chim Jost PMCID: PMC60186 Functional analysis of the p300 acetyltransferase domain: the PHD finger of p300 but not of CBP is dispensable for enzymatic activity Lorenza Bordoli, Susanne Hüsser, Urs Lüthi, Marco Netsch, Hatam Osmani, and Richard Eckner PMCID: PMC60180 A gene required for the novel activation of a class II DNA photolyase in Chlamydomonas Jason L. Petersen and Gary D. Small PMCID: PMC60191 Catalytic cleavage of cis- and trans-acting antigenomic delta ribozymes in the presence of various divalent metal ions Jan Wrzesinski, Michal Legiewicz, Barbara Smólska, and Jerzy Ciesiolka PMCID: PMC60188 Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription Fang Yu, Nora Zingler, Gerald Schumann, and Wolf H. Strätling PMCID: PMC60185 Mitochondrial DNA deletion mutations are concomitant with ragged red regions of individual, aged muscle fibers: analysis by laser-capture microdissection Zhengjin Cao, Jonathan Wanagat, Susan H. McKiernan, and Judd M. Aiken PMCID: PMC60181 NAR Methods Online TissueInfo: high-throughput identification of tissue expression profiles and specificity Lucy Skrabanek and Fabien Campagne PMCID: PMC60201 Evaluation of complexation of metal-mediated DNA-binding drugs to oligonucleotides via electrospray ionization mass spectrometry Michelle L. Reyzer, Jennifer S. Brodbelt, Sean M. Kerwin, and Devinder Kumar PMCID: PMC60202 DNA sequencing using biotinylated dideoxynucleotides and mass spectrometry John R. Edwards, Yasuhiro Itagaki, and Jingyue Ju PMCID: PMC60203 A versatile in vivo footprinting technique using 1,10-phenanthroline–copper complex to study important cellular processes Shashwati Basak and V. Nagaraja PMCID: PMC60204 Bisulfite genomic sequencing of microdissected cells Antoine Kerjean, Annick Vieillefond, Nicolas Thiounn, Mathilde Sibony, Marc Jeanpierre, and Pierre Jouannet PMCID: PMC60205 Robust and efficient synthetic method for forming DNA microarrays Patricia L. Dolan, Yang Wu, Linnea K. Ista, Robert L. Metzenberg, Mary Anne Nelson, and Gabriel P. Lopez PMCID: PMC60206 |
