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Volume 9(12);  December 2000
Research Articles
Editorial
M. Hermodson
Protein Sci. 2000 December; 9(12): 2293.
PMCID: PMC2144536
Design of a minimal protein oligomerization domain by a structural approach.
P. Burkhard, M. Meier, and A. Lustig
Protein Sci. 2000 December; 9(12): 2294–2301.
PMCID: PMC2144530
Cysteine-independent polymerization of metallothioneins in solutions and in crystals.
T. Hou, Y. An, B. Ru, R. Bi, and X. Xu
Protein Sci. 2000 December; 9(12): 2302–2312.
PMCID: PMC2144527
Automated search of natively folded protein fragments for high-throughput structure determination in structural genomics.
Y. Kuroda, K. Tani, Y. Matsuo, and S. Yokoyama
Protein Sci. 2000 December; 9(12): 2313–2321.
PMCID: PMC2144534
Thermodynamic and structural characterization of Asn and Ala residues in the disallowed II' region of the Ramachandran plot.
M. C. Vega, J. C. Martínez, and L. Serrano
Protein Sci. 2000 December; 9(12): 2322–2328.
PMCID: PMC2144520
Structural comparison of Ntn-hydrolases.
C. Oinonen and J. Rouvinen
Protein Sci. 2000 December; 9(12): 2329–2337.
PMCID: PMC2144523
Beta-helix core packing within the triple-stranded oligomerization domain of the P22 tailspike.
J. F. Kreisberg, S. D. Betts, and J. King
Protein Sci. 2000 December; 9(12): 2338–2343.
PMCID: PMC2144511
Functional prediction: identification of protein orthologs and paralogs.
R. Chen and S. S. Jeong
Protein Sci. 2000 December; 9(12): 2344–2353.
PMCID: PMC2144510
Backbone dynamics of sequence specific recognition and binding by the yeast Pho4 bHLH domain probed by NMR.
J. W. Cave, W. Kremer, and D. E. Wemmer
Protein Sci. 2000 December; 9(12): 2354–2365.
PMCID: PMC2144533
Evolution of binding affinity in a WW domain probed by phage display.
P. A. Dalby, R. H. Hoess, and W. F. DeGrado
Protein Sci. 2000 December; 9(12): 2366–2376.
PMCID: PMC2144528
Stability and peptide binding specificity of Btk SH2 domain: molecular basis for X-linked agammaglobulinemia.
S. R. Tzeng, M. T. Pai, F. D. Lung, C. W. Wu, P. P. Roller, B. Lei, C. J. Wei, S. C. Tu, S. H. Chen, W. J. Soong, and J. W. Cheng
Protein Sci. 2000 December; 9(12): 2377–2385.
PMCID: PMC2144513
Delineation of the calcineurin-interacting region of cyclophilin B.
M. Carpentier, F. Allain, B. Haendler, M. C. Slomianny, and G. Spik
Protein Sci. 2000 December; 9(12): 2386–2393.
PMCID: PMC2144515
The effects of disulfide bonds on the denatured state of barnase.
J. Clarke, A. M. Hounslow, C. J. Bond, A. R. Fersht, and V. Daggett
Protein Sci. 2000 December; 9(12): 2394–2404.
PMCID: PMC2144517
Chaperonin-assisted folding of glutamine synthetase under nonpermissive conditions: off-pathway aggregation propensity does not determine the co-chaperonin requirement.
P. A. Voziyan and M. T. Fisher
Protein Sci. 2000 December; 9(12): 2405–2412.
PMCID: PMC2144532
Thermal stability of Clostridium pasteurianum rubredoxin: deconvoluting the contributions of the metal site and the protein.
F. Bonomi, D. Fessas, S. Iametti, D. M. Kurtz, Jr, and S. Mazzini
Protein Sci. 2000 December; 9(12): 2413–2426.
PMCID: PMC2144531
Fibers of tau fragments, but not full length tau, exhibit a cross beta-structure: implications for the formation of paired helical filaments.
A. M. Giannetti, G. Lindwall, M. F. Chau, M. J. Radeke, S. C. Feinstein, and L. A. Kohlstaedt
Protein Sci. 2000 December; 9(12): 2427–2435.
PMCID: PMC2144525
Presence of closely spaced protein thiols on the surface of mammalian cells.
N. Donoghue, P. T. Yam, X. M. Jiang, and P. J. Hogg
Protein Sci. 2000 December; 9(12): 2436–2445.
PMCID: PMC2144521
Resonant mirror biosensor analysis of type Ialpha cAMP-dependent protein kinase B domain--cyclic nucleotide interactions.
W. W. Muhonen and J. B. Shabb
Protein Sci. 2000 December; 9(12): 2446–2456.
PMCID: PMC2144508
The design of a hyperstable mutant of the Abp1p SH3 domain by sequence alignment analysis.
A. Rath and A. R. Davidson
Protein Sci. 2000 December; 9(12): 2457–2469.
PMCID: PMC2144507
Thirty-plus functional families from a single motif.
L. Yu, C. Gaitatzes, E. Neer, and T. F. Smith
Protein Sci. 2000 December; 9(12): 2470–2476.
PMCID: PMC2144505
Enhancement by Mg2+ of domain specificity in Ca2+-dependent interactions of calmodulin with target sequences.
S. R. Martin, L. Masino, and P. M. Bayley
Protein Sci. 2000 December; 9(12): 2477–2488.
PMCID: PMC2144519
Structural changes in alpha-synuclein affect its chaperone-like activity in vitro.
T. D. Kim, S. R. Paik, C. H. Yang, and J. Kim
Protein Sci. 2000 December; 9(12): 2489–2496.
PMCID: PMC2144529
Characterization of the interface structure of enzyme-inhibitor complex by using hydrogen-deuterium exchange and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.
S. Akashi and K. Takio
Protein Sci. 2000 December; 9(12): 2497–2505.
PMCID: PMC2144506
Methylene as a possible universal footprinting reagent that will include hydrophobic surface areas: overview and feasibility: properties of diazirine as a precursor.
F. M. Richards, R. Lamed, R. Wynn, D. Patel, and G. Olack
Protein Sci. 2000 December; 9(12): 2506–2517.
PMCID: PMC2144514
An improved tripod amphiphile for membrane protein solubilization.
S. M. Yu, D. T. McQuade, M. A. Quinn, C. P. Hackenberger, M. P. Krebs, A. S. Polans, and S. H. Gellman
Protein Sci. 2000 December; 9(12): 2518–2527.
PMCID: PMC2144526
Rationale for Bcl-xL/Bad peptide complex formation from structure, mutagenesis, and biophysical studies.
A. M. Petros, D. G. Nettesheim, Y. Wang, E. T. Olejniczak, R. P. Meadows, J. Mack, K. Swift, E. D. Matayoshi, H. Zhang, C. B. Thompson, and S. W. Fesik
Protein Sci. 2000 December; 9(12): 2528–2534.
PMCID: PMC2144516
Ab initio molecular dynamics studies on HIV-1 reverse transcriptase triphosphate binding site: implications for nucleoside-analog drug resistance.
F. Alber and P. Carloni
Protein Sci. 2000 December; 9(12): 2535–2546.
PMCID: PMC2144522
N-terminal mutations in the anti-estradiol Fab 57-2 modify its hapten binding properties.
P. Saviranta PJauria, U. Lamminmäki, J. Hellman, S. Eriksson, and T. Lövgren
Protein Sci. 2000 December; 9(12): 2547–2556.
PMCID: PMC2144535
The structure of the yrdC gene product from Escherichia coli reveals a new fold and suggests a role in RNA binding.
M. Teplova, V. Tereshko, R. Sanishvili, A. Joachimiak, T. Bushueva, W. F. Anderson, and M. Egli
Protein Sci. 2000 December; 9(12): 2557–2566.
PMCID: PMC2144518
A single amino acid substitution affects substrate specificity in cysteine proteinases from Fasciola hepatica.
P. M. Smooker, J. C. Whisstock, J. A. Irving, S. Siyaguna, T. W. Spithill, and R. N. Pike
Protein Sci. 2000 December; 9(12): 2567–2572.
PMCID: PMC2144524
Fluorescence and 19F NMR evidence that phenylalanine, 3-L-fluorophenylalanine and 4-L-fluorophenylalanine bind to the L-leucine specific receptor of Escherichia coli.
L. A. Luck and C. Johnson
Protein Sci. 2000 December; 9(12): 2573–2576.
PMCID: PMC2144512
Effect of deamidation on folding of ribonuclease A.
S. Orrù, L. Vitagliano, L. Esposito, L. Mazzarella, G. Marino, and M. Ruoppolo
Protein Sci. 2000 December; 9(12): 2577–2582.
PMCID: PMC2144509
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