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Volume 93(12);  December 15, 2007
New and Notable
Mechanisms of the Frank-Starling Law of the Heart: The Beat Goes On
R. John Solaro
Biophys J. 2007 December 15; 93(12): 4095–4096. Published online 2007 August 31. doi: 10.1529/biophysj.107.117200.
PMCID: PMC2098723
The Regulation of Muscle Contraction: As in Life, It Keeps Getting More Complex
C. G. dos Remedios
Biophys J. 2007 December 15; 93(12): 4097–4098. Published online 2007 September 21. doi: 10.1529/biophysj.107.117762.
PMCID: PMC2098728
The Great Hunt For Extra Compliance
Jan Liphardt
Biophys J. 2007 December 15; 93(12): 4099. Published online 2007 August 31. doi: 10.1529/biophysj.107.117572.
PMCID: PMC2098707
Biophysical Theory and Modeling
The Role of Cavitation in Liposome Formation
Eric S. Richardson, William G. Pitt, and Dixon J. Woodbury
Biophys J. 2007 December 15; 93(12): 4100–4107. Published online 2007 August 31. doi: 10.1529/biophysj.107.104042.
PMCID: PMC2098738
Folding and Misfolding of the Collagen Triple Helix: Markov Analysis of Molecular Dynamics Simulations
Sanghyun Park, Teri E. Klein, and Vijay S. Pande
Biophys J. 2007 December 15; 93(12): 4108–4115. Published online 2007 August 31. doi: 10.1529/biophysj.107.108100.
PMCID: PMC2098736
A Water-Explicit Lattice Model of Heat-, Cold-, and Pressure-Induced Protein Unfolding
Bryan A. Patel, Pablo G. Debenedetti, Frank H. Stillinger, and Peter J. Rossky
Biophys J. 2007 December 15; 93(12): 4116–4127. Published online 2007 August 31. doi: 10.1529/biophysj.107.108530.
PMCID: PMC2098741
A Theory of Protein Dynamics to Predict NMR Relaxation
Esther Caballero-Manrique, Jenelle K. Bray, William A. Deutschman, Frederick W. Dahlquist, and Marina G. Guenza
Biophys J. 2007 December 15; 93(12): 4128–4140. Published online 2007 August 31. doi: 10.1529/biophysj.107.111849.
PMCID: PMC2098714
A Mining Minima Approach to Exploring the Docking Pathways of p-Nitrocatechol Sulfate to YopH
Zunnan Huang and Chung F. Wong
Biophys J. 2007 December 15; 93(12): 4141–4150. Published online 2007 August 31. doi: 10.1529/biophysj.107.113860.
PMCID: PMC2098719
Dynamics of Learning in Cultured Neuronal Networks with Antagonists of Glutamate Receptors
Yanling Li, Wei Zhou, Xiangning Li, Shaoqun Zeng, and Qingming Luo
Biophys J. 2007 December 15; 93(12): 4151–4158. Published online 2007 August 31. doi: 10.1529/biophysj.107.111153.
PMCID: PMC2098743
Channels, Receptors, and Electrical Signaling
An Inactivation Gate in the Selectivity Filter of KCNQ1 Potassium Channels
Gilad Gibor, Daniel Yakubovich, Avia Rosenhouse-Dantsker, Asher Peretz, Hella Schottelndreier, Guiscard Seebohm, Nathan Dascal, Diomedes E. Logothetis, Yoav Paas, and Bernard Attali
Biophys J. 2007 December 15; 93(12): 4159–4172. Published online 2007 August 17. doi: 10.1529/biophysj.107.107987.
PMCID: PMC2098732
An Activation Gating Switch in Kv1.2 Is Localized to a Threonine Residue in the S2-S3 Linker
Saman Rezazadeh, Harley T. Kurata, Thomas W. Claydon, Steven J. Kehl, and David Fedida
Biophys J. 2007 December 15; 93(12): 4173–4186. Published online 2007 August 31. doi: 10.1529/biophysj.107.116160.
PMCID: PMC2098734
Two Gears of Pumping by the Sodium Pump
Ronald J. Clarke and David J. Kane
Biophys J. 2007 December 15; 93(12): 4187–4196. Published online 2007 August 31. doi: 10.1529/biophysj.107.111591.
PMCID: PMC2098724
Stability of the Shab K+ Channel Conductance in 0 K+ Solutions: The Role of the Membrane Potential
Froylán Gómez-Lagunas
Biophys J. 2007 December 15; 93(12): 4197–4208. Published online 2007 August 17. doi: 10.1529/biophysj.106.095794.
PMCID: PMC2098742
Speeding the Recovery from Ultraslow Inactivation of Voltage-Gated Na+ Channels by Metal Ion Binding to the Selectivity Filter: A Foot-on-the-Door?
Julia Szendroedi, Walter Sandtner, Touran Zarrabi, Eva Zebedin, Karlheinz Hilber, Samuel C. Dudley, Jr., Harry A. Fozzard, and Hannes Todt
Biophys J. 2007 December 15; 93(12): 4209–4224. Published online 2007 August 24. doi: 10.1529/biophysj.107.104794.
PMCID: PMC2098733
Membranes
Effect of Lipid Peroxidation on the Properties of Lipid Bilayers: A Molecular Dynamics Study
Jirasak Wong-ekkabut, Zhitao Xu, Wannapong Triampo, I-Ming Tang, D. Peter Tieleman, and Luca Monticelli
Biophys J. 2007 December 15; 93(12): 4225–4236. Published online 2007 August 31. doi: 10.1529/biophysj.107.112565.
PMCID: PMC2098729
Effects of Hydrophobic Surfactant Proteins on Collapse of Pulmonary Surfactant Monolayers
Florence Lhert, Wenfei Yan, Samares C. Biswas, and Stephen B. Hall
Biophys J. 2007 December 15; 93(12): 4237–4243. Published online 2007 August 24. doi: 10.1529/biophysj.107.111823.
PMCID: PMC2098737
Kinetics and Thermodynamics of the Association of Dehydroergosterol with Lipid Bilayer Membranes
Luís M. B. B. Estronca, Maria João Moreno, and Winchil L. C. Vaz
Biophys J. 2007 December 15; 93(12): 4244–4253. Published online 2007 August 31. doi: 10.1529/biophysj.107.112847.
PMCID: PMC2098731
Protein-Induced Surface Structuring in Myelin Membrane Monolayers
Carla M. Rosetti and Bruno Maggio
Biophys J. 2007 December 15; 93(12): 4254–4267. Published online 2007 September 28. doi: 10.1529/biophysj.107.112441.
PMCID: PMC2098705
Influence of Monolayer-Monolayer Coupling on the Phase Behavior of a Fluid Lipid Bilayer
Alexander J. Wagner, Stephan Loew, and Sylvio May
Biophys J. 2007 December 15; 93(12): 4268–4277. Published online 2007 August 31. doi: 10.1529/biophysj.107.115675.
PMCID: PMC2098730
The Dynamic Orientation of Membrane-Bound Peptides: Bridging Simulations and Experiments
Santi Esteban-Martín and Jesús Salgado
Biophys J. 2007 December 15; 93(12): 4278–4288. Published online 2007 August 24. doi: 10.1529/biophysj.107.113043.
PMCID: PMC2098706
Zwitterionic Phospholipids and Sterols Modulate Antimicrobial Peptide-Induced Membrane Destabilization
A. James Mason, Arnaud Marquette, and Burkhard Bechinger
Biophys J. 2007 December 15; 93(12): 4289–4299. Published online 2007 August 31. doi: 10.1529/biophysj.107.116681.
PMCID: PMC2098721
Investigation of the Adsorption of PEG1500-12-Acyloxystearate Surfactants onto Phospholipid Bilayers: An Ellipsometry and Cryo-TEM Study
Mauro Vaccaro, Christian von Corswant, and Olle Söderman
Biophys J. 2007 December 15; 93(12): 4300–4306. Published online 2007 August 31. doi: 10.1529/biophysj.107.109900.
PMCID: PMC2098744
Effect of the Structure of Lipids Favoring Disordered Domain Formation on the Stability of Cholesterol-Containing Ordered Domains (Lipid Rafts): Identification of Multiple Raft-Stabilization Mechanisms
Omar Bakht, Priyadarshini Pathak, and Erwin London
Biophys J. 2007 December 15; 93(12): 4307–4318. Published online 2007 August 31. doi: 10.1529/biophysj.107.114967.
PMCID: PMC2098711
Muscle and Contractility
Effects of Sustained Length-Dependent Activation on In Situ Cross-Bridge Dynamics in Rat Hearts
James T. Pearson, Mikiyasu Shirai, Hirotsugu Tsuchimochi, Daryl O. Schwenke, Takayuki Ishida, Kenji Kangawa, Hiroyuki Suga, and Naoto Yagi
Biophys J. 2007 December 15; 93(12): 4319–4329. Published online 2007 August 31. doi: 10.1529/biophysj.107.111740.
PMCID: PMC2098739
Nonlinear Force-Length Relationship in the ADP-Induced Contraction of Skeletal Myofibrils
Yuta Shimamoto, Fumiaki Kono, Madoka Suzuki, and Shin'ichi Ishiwata
Biophys J. 2007 December 15; 93(12): 4330–4341. Published online 2007 September 21. doi: 10.1529/biophysj.107.110650.
PMCID: PMC2098727
Nucleic Acids
Intrinsic Curvature of DNA Influences LacR-Mediated Looping
Sachin Goyal, Todd Lillian, Seth Blumberg, Jens-Christian Meiners, Edgar Meyhöfer, and N. C. Perkins
Biophys J. 2007 December 15; 93(12): 4342–4359. Published online 2007 August 31. doi: 10.1529/biophysj.107.112268.
PMCID: PMC2098735
Elasticity of Short DNA Molecules: Theory and Experiment for Contour Lengths of 0.6–7 μm
Yeonee Seol, Jinyu Li, Philip C. Nelson, Thomas T. Perkins, and M. D. Betterton
Biophys J. 2007 December 15; 93(12): 4360–4373. Published online 2007 August 31. doi: 10.1529/biophysj.107.112995.
PMCID: PMC2098713
Photobiophysics
On the Effects of PufX on the Absorption Properties of the Light-Harvesting Complexes of Rhodobacter sphaeroides
Tihamér Geyer
Biophys J. 2007 December 15; 93(12): 4374–4381. Published online 2007 August 31. doi: 10.1529/biophysj.107.106377.
PMCID: PMC2098715
Proteins
The Distribution of Residues in a Polypeptide Sequence Is a Determinant of Aggregation Optimized by Evolution
Elodie Monsellier, Matteo Ramazzotti, Patrizia Polverino de Laureto, Gian-Gaetano Tartaglia, Niccolò Taddei, Angelo Fontana, Michele Vendruscolo, and Fabrizio Chiti
Biophys J. 2007 December 15; 93(12): 4382–4391. Published online 2007 August 31. doi: 10.1529/biophysj.107.111336.
PMCID: PMC2098718
Nonnative Protein Polymers: Structure, Morphology, and Relation to Nucleation and Growth
William F. Weiss, IV, Travis K. Hodgdon, Eric W. Kaler, Abraham M. Lenhoff, and Christopher J. Roberts
Biophys J. 2007 December 15; 93(12): 4392–4403. Published online 2007 August 17. doi: 10.1529/biophysj.107.112102.
PMCID: PMC2098717
Low Frequency Spectral Density of Ferrous Heme: Perturbations Induced by Axial Ligation and Protein Insertion
Flaviu Gruia, Xiong Ye, Dan Ionascu, Minoru Kubo, and Paul M. Champion
Biophys J. 2007 December 15; 93(12): 4404–4413. Published online 2007 August 31. doi: 10.1529/biophysj.107.114736.
PMCID: PMC2098722
Supramolecular Assemblies
Lipoplexes Formed by DNA and Ferrocenyl Lipids: Effect of Lipid Oxidation State on Size, Internal Dynamics, and ζ-Potential
Melissa E. Hays, Christopher M. Jewell, Yukishige Kondo, David M. Lynn, and Nicholas L. Abbott
Biophys J. 2007 December 15; 93(12): 4414–4424. Published online 2007 August 24. doi: 10.1529/biophysj.107.107094.
PMCID: PMC2098709
Mechanical Properties of Spider Dragline Silk: Humidity, Hysteresis, and Relaxation
T. Vehoff, A. Glišović, H. Schollmeyer, A. Zippelius, and T. Salditt
Biophys J. 2007 December 15; 93(12): 4425–4432. Published online 2007 August 31. doi: 10.1529/biophysj.106.099309.
PMCID: PMC2098708
Spectroscopy, Imaging, Other Techniques
Sum Frequency Vibrational Spectroscopy: The Molecular Origins of the Optical Second-Order Nonlinearity of Collagen
Israel Rocha-Mendoza, Diego R. Yankelevich, Mingshi Wang, Karen M. Reiser, Curt W. Frank, and André Knoesen
Biophys J. 2007 December 15; 93(12): 4433–4444. Published online 2007 August 31. doi: 10.1529/biophysj.107.111047.
PMCID: PMC2098726
Cell Biophysics
Molecular Motor-Induced Instabilities and Cross Linkers Determine Biopolymer Organization
D. Smith, F. Ziebert, D. Humphrey, C. Duggan, M. Steinbeck, W. Zimmermann, and J. Käs
Biophys J. 2007 December 15; 93(12): 4445–4452. Published online 2007 June 29. doi: 10.1529/biophysj.106.095919.
PMCID: PMC2098725
Fibroblast Adaptation and Stiffness Matching to Soft Elastic Substrates
Jérôme Solon, Ilya Levental, Kheya Sengupta, Penelope C. Georges, and Paul A. Janmey
Biophys J. 2007 December 15; 93(12): 4453–4461. doi: 10.1529/biophysj.106.101386.
PMCID: PMC2098710
Changes of the Membrane Lipid Organization Characterized by Means of a New Cholesterol-Pyrene Probe
Laurent Le Guyader, Christophe Le Roux, Serge Mazères, Hafida Gaspard-Iloughmane, Heinz Gornitzka, Claire Millot, Christophe Mingotaud, and André Lopez
Biophys J. 2007 December 15; 93(12): 4462–4473. Published online 2007 August 31. doi: 10.1529/biophysj.107.112821.
PMCID: PMC2098716
Noise Propagation and Scaling in Regulation of Gonadotrope Biosynthesis
Frederique Ruf, Fernand Hayot, Myung-June Park, Yongchao Ge, Gang Lin, Badrinath Roysam, and Stuart C. Sealfon
Biophys J. 2007 December 15; 93(12): 4474–4480. Published online 2007 August 24. doi: 10.1529/biophysj.107.115170.
PMCID: PMC2098712
Other
Mechanisms of Laser-Induced Dissection and Transport of Histologic Specimens
Alfred Vogel, Kathrin Lorenz, Verena Horneffer, Gereon Hüttmann, Dorthe von Smolinski, and Andreas Gebert
Biophys J. 2007 December 15; 93(12): 4481–4500. Published online 2007 August 31. doi: 10.1529/biophysj.106.102277.
PMCID: PMC2098740
Biophysical Letters
Multifractality in the Peripheral Cardiovascular System from Pointwise Hölder Exponents of Laser Doppler Flowmetry Signals
Anne Humeau, François Chapeau-Blondeau, David Rousseau, Maylis Tartas, Bérengère Fromy, and Pierre Abraham
Biophys J. 2007 December 15; 93(12): L59–L61. doi: 10.1529/biophysj.107.119057.
PMCID: PMC2098720
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