| | Articles Thermodynamic stability of base
pairs between
2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide
incorporation specificity during replication Junji Kawakami, Hiroyuki Kamiya, Kyohko Yasuda, Hiroyoshi Fujiki, Hiroshi Kasai, and Naoki Sugimoto PMCID: PMC55858 Repression of rRNA synthesis
due to a secretory defect requires the C-terminal silencing domain
of Rap1p in Saccharomyces cerevisiae Keita Miyoshi, Tokichi Miyakawa, and Keiko Mizuta PMCID: PMC55856 Suppression of gene amplification
and chromosomal DNA integration by the DNA mismatch repair system Ching-Tai Lin, Yi
Lisa Lyu, Hai Xiao, Wei-Hsin Lin, and Jacqueline Whang-Peng PMCID: PMC55855 Electrostatic control of half-site
spacing preferences by the cyclic AMP response element-binding protein CREB Jin Kim Montclare, Leslie
S. Sloan, and Alanna Schepartz PMCID: PMC55852 Initiation of DNA replication
by DNA polymerases from primers forming a triple helix Christophe Rocher, Renée Dalibart, Thierry Letellier, Gilles Précigoux, and Patrick Lestienne PMCID: PMC55843 Composition and arrangement of
genes define the strength of IRES-driven translation in bicistronic mRNAs Meike Hennecke, Marcin Kwissa, Karin Metzger, André Oumard, Andrea Kröger, Reinhold Schirmbeck, Jörg Reimann, and Hansjörg Hauser PMCID: PMC55851 Characterization of Sp1, AP-1,
CBF and KRC binding sites and minisatellite DNA as functional elements
of the metastasis-associated mts1/S100A4 gene
intronic enhancer Martin A. Cohn, Iben Hjelmsø, Lai-Chu Wu, Per Guldberg, Eugene M. Lukanidin, and Eugene
M. Tulchinsky PMCID: PMC55845 SOX6 binds CtBP2 to repress transcription
from the Fgf-3 promoter Akira Murakami, Sanami Ishida, Jane Thurlow, Jean-Michel Revest, and Clive Dickson PMCID: PMC55854 The human growth hormone locus
control region mediates long-distance transcriptional activation independent
of nuclear matrix attachment regions Brian M. Shewchuk, Nancy
E. Cooke, and Stephen A. Liebhaber PMCID: PMC55853 Standard atomic volumes in double-stranded
DNA and packing in protein–DNA interfaces Katalin Nadassy, Isabel Tomás-Oliveira, Ian Alberts, Joël Janin, and Shoshana J. Wodak PMCID: PMC55857 Nω-arginine
dimethylation modulates the interaction between a Gly/Arg-rich
peptide from human nucleolin and nucleic acids Baktisaran Raman, Corrado Guarnaccia, Katalin Nadassy, Sotir Zakhariev, Alessandro Pintar, Francesco Zanuttin, Dávid Frigyes, Cristina Acatrinei, Alessandro Vindigni, Gábor Pongor, and Sándor Pongor PMCID: PMC55848 Human telomerase RNA–protein
interactions François Bachand, Ibtissem Triki, and Chantal Autexier PMCID: PMC55859 Effects of base change mutations
within an Escherichia coli ribosomal RNA leader
region on rRNA maturation and ribosome formation Jan Schäferkordt and Rolf Wagner PMCID: PMC55841 Linked oligodeoxynucleotides
show binding cooperativity and can selectively impair replication
of deleted mitochondrial DNA templates Robert W. Taylor, Theresa
M. Wardell, Bernard
A. Connolly, Douglass
M. Turnbull, and Robert
N. Lightowlers PMCID: PMC55846 Solution structure of an oligonucleotide
containing an abasic site: evidence for an unusual deoxyribose conformation Silvia T. Hoehn, Christopher
J. Turner, and JoAnne Stubbe PMCID: PMC55844 Differential transcription of
the orphan receptor RORβ in nuclear
extracts derived from Neuro2A and HeLa cells Katrin Gawlas and Hendrik
G. Stunnenberg PMCID: PMC55847 Methylglyoxal, an endogenous
aldehyde, crosslinks DNA polymerase and the substrate DNA Naoko Murata-Kamiya and Hiroyuki Kamiya PMCID: PMC55850 Differential localization of
HDAC4 orchestrates muscle differentiation Eric A. Miska, Emma Langley, Daniel Wolf, Christina Karlsson, Jon Pines, and Tony Kouzarides PMCID: PMC55849 Enhancer activity of HS2 of the
human β-LCR is modulated by distance
from the key nucleosome Yoshiaki Onishi and Ryoiti Kiyama PMCID: PMC55842 NAR Methods Online Conditional cell ablation by
stringent tetracycline-dependent regulation of barnase in
mammalian cells Stefanie Leuchtenberger, Angela Perz, Christiane Gatz, and Jörg
W. Bartsch PMCID: PMC55860 Analysis of single nucleotide
polymorphisms with solid phase invasive cleavage reactions Priscilla Wilkins
Stevens, Jeff
G. Hall, Victor Lyamichev, Bruce P. Neri, Manchun Lu, Liman Wang, Lloyd M. Smith, and David M. Kelso PMCID: PMC55861 In vitro repair
of complex unligatable oxidatively induced DNA double-strand breaks
by human cell extracts Elzbieta Pastwa, Ronald
D. Neumann, and Thomas
A. Winters PMCID: PMC55862 Real-time observation of a single
DNA digestion by λ exonuclease under
a fluorescence microscope field Shun-ichi Matsuura, Jun Komatsu, Ken Hirano, Hachiro Yasuda, Kazunori Takashima, Shinji Katsura, and Akira Mizuno PMCID: PMC55863 Adenovirus-mediated Cre deletion
of floxed sequences in primary mouse cells is an efficient alternative
for studies of gene deletion Sandrine Prost, Sharon Sheahan, Dominic Rannie, and David
J. Harrison PMCID: PMC55864 DNA monolayer on gold substrates
characterized by nanoparticle labeling and scanning force microscopy A. Csáki, R. Möller, W. Straube, J.
M. Köhler, and W. Fritzsche PMCID: PMC55865 Chloroplast transit peptide prediction:
a peek inside the black box Andrew I. Schein, Jessica
C. Kissinger, and Lyle
H. Ungar PMCID: PMC55866 Optimal conditions to use Pfu exo– DNA
polymerase for highly efficient ligation-mediated polymerase chain reaction
protocols Martin Angers, Jean-François Cloutier, André Castonguay, and Régen Drouin PMCID: PMC55867 Multiplex polymerase chain reaction
(PCR) with color-tagged module-shuffling primers for comparing gene expression
levels in various cells C. Uematsu, J. Nishida, K. Okano, F. Miura, T. Ito, Y. Sakaki, and H. Kambara PMCID: PMC55868 The hybridization-stabilization
assay: a solution-based isothermal method for rapid screening and determination
of sequence preference of ligands
that bind to duplexed nucleic acids Carolyn Gonzalez, Megan Moore, Sofia Ribeiro, Uli Schmitz, Gary
P. Schroth, Lisa Turin, and Thomas
W. Bruice PMCID: PMC55869 |
