| | Molecular Biology ZNF366 is an estrogen receptor corepressor that acts through CtBP and histone deacetylases Jorge Lopez-Garcia, Manikandan Periyasamy, Ross S. Thomas, Mark Christian, Maria Leao, Parmjit Jat, Karin B. Kindle, David M. Heery, Malcolm G. Parker, Lakjaya Buluwela, Tahereh Kamalati, and Simak Ali PMCID: PMC1693901 NSPc1 is a cell growth regulator that acts as a transcriptional repressor of p21Waf1/Cip1 via the RARE element Yanhua Gong, Jiping Yue, Xudong Wu, Xu Wang, Jianyan Wen, Lifang Lu, Xiaozhong Peng, Boqin Qiang, and Jiangang Yuan PMCID: PMC1693893 PARP-1 and Ku compete for repair of DNA double strand breaks by distinct NHEJ pathways Minli Wang, Weizhong Wu, Wenqi Wu, Bustanur Rosidi, Lihua Zhang, Huichen Wang, and George Iliakis PMCID: PMC1693894 The involvement of replication in single stranded oligonucleotide-mediated gene repair Michael S. Y. Huen, Xin-tian Li, Lin-Yu Lu, Rory M. Watt, De-Pei Liu, and Jian-Dong Huang PMCID: PMC1693898 The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integration Yasuko Kamisugi, Katja Schlink, Stefan A. Rensing, Gabriele Schween, Mark von Stackelberg, Andrew C. Cuming, Ralf Reski, and David J. Cove PMCID: PMC1693892 Chromosomal integration of LTR-flanked DNA in yeast expressing HIV-1 integrase: down regulation by RAD51 S. Desfarges, J. San Filippo, M. Fournier, C. Calmels, A. Caumont-Sarcos, S. Litvak, P. Sung, and V. Parissi PMCID: PMC1693895 SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo Abhijit Shukla, Pratibha Bajwa, and Sukesh R. Bhaumik PMCID: PMC1693896 Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing Todd Blevins, Rajendran Rajeswaran, Padubidri V. Shivaprasad, Daria Beknazariants, Azeddine Si-Ammour, Hyun-Sook Park, Franck Vazquez, Dominique Robertson, Frederick Meins, Jr, Thomas Hohn, and Mikhail M. Pooggin PMCID: PMC1669714 Proteolysis restricts localization of CID, the centromere-specific histone H3 variant of Drosophila, to centromeres Olga Moreno-Moreno, Mònica Torras-Llort, and Fernando Azorín PMCID: PMC1693906 Inhibition of CBF/NF-Y mediated transcription activation arrests cells at G2/M phase and suppresses expression of genes activated at G2/M phase of the cell cycle Qianghua Hu, Jing-Fang Lu, Rong Luo, Subrata Sen, and Sankar N. Maity PMCID: PMC1693888 DAXX interacts with phage ΦC31 integrase and inhibits recombination Jin-zhong Chen, Chao-neng Ji, Guan-lan Xu, Rong-yan Pang, Ji-hua Yao, Huan-zhang Zhu, Jing-lun Xue, and William Jia PMCID: PMC1669754 Potentiation of Smad-mediated transcriptional activation by the RNA-binding protein RBPMS Yan Sun, Lihua Ding, Hao Zhang, Juqiang Han, Xiao Yang, Jinghua Yan, Yunfeng Zhu, Jiezhi Li, Haifeng Song, and Qinong Ye PMCID: PMC1669761 The telomerase-recruitment domain of the telomere binding protein Cdc13 is regulated by Mec1p/Tel1p-dependent phosphorylation Shun-Fu Tseng, Jing-Jer Lin, and Shu-Chun Teng PMCID: PMC1669766 NHEJ-deficient DT40 cells have increased levels of immunoglobulin gene conversion: evidence for a double strand break intermediate Ephraim S. Tang and Alberto Martin PMCID: PMC1669771 Replication in mammalian cells recapitulates the locus-specific differences in somatic instability of genomic GAA triplet-repeats Paul M. Rindler, Rhonda M. Clark, Laura M. Pollard, Irene De Biase, and Sanjay I. Bidichandani PMCID: PMC1669776 The oligomeric Rep protein of Mungbean yellow mosaic India virus (MYMIV) is a likely replicative helicase Nirupam Roy Choudhury, Punjab Singh Malik, Dharmendra Kumar Singh, Mohammad Nurul Islam, Kosalai Kaliappan, and Sunil Kumar Mukherjee PMCID: PMC1669733 RNA Sequence-specific recognition of colicin E5, a tRNA-targeting ribonuclease Tetsuhiro Ogawa, Sakura Inoue, Shunsuke Yajima, Makoto Hidaka, and Haruhiko Masaki PMCID: PMC1635277 A single tRNA base pair mediates bacterial tRNA-dependent biosynthesis of asparagine Marc Bailly, Stamatina Giannouli, Mickael Blaise, Constantinos Stathopoulos, Daniel Kern, and Hubert Dominique Becker PMCID: PMC1635274 Keeping signals straight in transcription regulation: specificity determinants for the interaction of a family of conserved bacterial RNA–protein couples Oliver Schilling, Christina Herzberg, Tina Hertrich, Hanna Vörsmann, Dirk Jessen, Sebastian Hübner, Fritz Titgemeyer, and Jörg Stülke PMCID: PMC1635312 Both introns and long 3′-UTRs operate as cis-acting elements to trigger nonsense-mediated decay in plants Sándor Kertész, Zoltán Kerényi, Zsuzsanna Mérai, Imre Bartos, Tamás Pálfy, Endre Barta, and Dániel Silhavy PMCID: PMC1693880 Concentration dependent selection of targets by an SR splicing regulator results in tissue-specific RNA processing Junlin Qi, Shihuang Su, M. Elaine McGuffin, and William Mattox PMCID: PMC1669769 Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3′-UTRs Tomohiro Kubo, Tadashi Wada, Yuki Yamaguchi, Akira Shimizu, and Hiroshi Handa PMCID: PMC1669743 Structural Biology Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA–tRNA interaction Shunsuke Yajima, Sakura Inoue, Tetsuhiro Ogawa, Takamasa Nonaka, Kanju Ohsawa, and Haruhiko Masaki PMCID: PMC1669751 Genomics Diversity of tRNA genes in eukaryotes Jeffrey M. Goodenbour and Tao Pan PMCID: PMC1693877 Chemistry Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern Zunyi Yang, Daniel Hutter, Pinpin Sheng, A. Michael Sismour, and Steven A. Benner PMCID: PMC1635279 Methods Online Gene expression profiling of single cells on large-scale oligonucleotide arrays Claudia H. Hartmann and Christoph A. Klein PMCID: PMC1635316 A microfluidic-FCS platform for investigation on the dissociation of Sp1-DNA complex by doxorubicin Hsin-Chih Yeh, Christopher M. Puleo, Teck Chuan Lim, Yi-Ping Ho, Paul E. Giza, Ru Chih C. Huang, and Tza-Huei Wang PMCID: PMC1669725 Eliminating helper phage from phage display L. Chasteen, J. Ayriss, P. Pavlik, and A. R. M. Bradbury PMCID: PMC1693883 A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors Hongkai Ji, Steven A. Vokes, and Wing H. Wong PMCID: PMC1669715 Generation of a mouse mutant by oligonucleotide-mediated gene modification in ES cells Marieke Aarts, Marleen Dekker, Sandra de Vries, Anja van der Wal, and Hein te Riele PMCID: PMC1669774 Computational Biology Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins B. Jayaram, Kumkum Bhushan, Sandhya R. Shenoy, Pooja Narang, Surojit Bose, Praveen Agrawal, Debashish Sahu, and Vidhu Pandey PMCID: PMC1693886 Identification of alternative 5′/3′ splice sites based on the mechanism of splice site competition Huiyu Xia, Jianning Bi, and Yanda Li PMCID: PMC1669764 Nucleic Acid Enzymes Role of metal ions in catalysis by HIV integrase analyzed using a quantitative PCR disintegration assay Tracy L. Diamond and Frederic D. Bushman PMCID: PMC1693899 ‘LeishMan’ topoisomerase I: an ideal chimera for unraveling the role of the small subunit of unusual bi-subunit topoisomerase I from Leishmania donovani Agneyo Ganguly, Benu Brata Das, Nilkantha Sen, Amit Roy, Somdeb Bose Dasgupta, and Hemanta K. Majumder PMCID: PMC1669778 Stimulation of MCM helicase activity by a Cdc6 protein in the archaeon Thermoplasma acidophilum Gyri Teien Haugland, Jae-Ho Shin, Nils-Kåre Birkeland, and Zvi Kelman PMCID: PMC1669734 |
