| | Articles Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups Michiel Wels, Christof Francke, Robert Kerkhoven, Michiel Kleerebezem, and Roland J. Siezen PMCID: PMC1435977 Comparison of characteristics and function of translation termination signals between and within prokaryotic and eukaryotic organisms Andrew G. Cridge, Louise L. Major, Alhad A. Mahagaonkar, Elizabeth S. Poole, Leif A. Isaksson, and Warren P. Tate PMCID: PMC1435984 Aspects of large-scale chromatin structures in mouse liver nuclei can be predicted from the DNA sequence Alfred Cioffi, Tomara J. Fleury, and Arnold Stein PMCID: PMC1435979 Clerocidin interacts with the cleavage complex of Streptococcus pneumoniae topoisomerase IV to induce selective irreversible DNA damage Sara N. Richter, Elisabetta Leo, Giulia Giaretta, Barbara Gatto, L. Mark Fisher, and Manlio Palumbo PMCID: PMC1435983 Structural model for the multisubunit Type IC restriction–modification DNA methyltransferase M.EcoR124I in complex with DNA Agnieszka Obarska, Alex Blundell, Marcin Feder, Štěpánka Vejsadová, Eva Šišáková, Marie Weiserová, Janusz M. Bujnicki, and Keith Firman PMCID: PMC1435980 NMR solution structures of LNA (locked nucleic acid) modified quadruplexes Jakob T. Nielsen, Khalil Arar, and Michael Petersen PMCID: PMC1435981 Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding Ruud J. W. Schoemaker and Alexander P. Gultyaev PMCID: PMC1435978 Proteins surrounding hairpin IIIe of the hepatitis C virus internal ribosome entry site on the human 40S ribosomal subunit Elena Laletina, Dmitri Graifer, Alexey Malygin, Anton Ivanov, Ivan Shatsky, and Galina Karpova PMCID: PMC1435985 Substituent effects on the pairing and polymerase recognition of simple unnatural base pairs Gil Tae Hwang and Floyd E. Romesberg PMCID: PMC1440882 Novel link between E2F1 and Smac/DIABLO: proapoptotic Smac/DIABLO is transcriptionally upregulated by E2F1 Wei Xie, Peng Jiang, Lin Miao, Ying Zhao, Zhai Zhimin, Li Qing, Wei-guo Zhu, and Mian Wu PMCID: PMC1440883 dUTPase activity is critical to maintain genetic stability in Saccharomyces cerevisiae Marie Guillet, Patricia Auffret Van Der Kemp, and Serge Boiteux PMCID: PMC1440884 Identification and characterization of mitochondrial abasic (AP)-endonuclease in mammalian cells Ranajoy Chattopadhyay, Lee Wiederhold, Bartosz Szczesny, Istvan Boldogh, Tapas K. Hazra, Tadahide Izumi, and Sankar Mitra PMCID: PMC1440881 Snail1 transcriptional repressor binds to its own promoter and controls its expression Sandra Peiró, Maria Escrivà, Isabel Puig, Maria José Barberà, Natàlia Dave, Nicolás Herranz, Maria Jesús Larriba, Minna Takkunen, Clara Francí, Alberto Muñoz, Ismo Virtanen, Josep Baulida, and Antonio García de Herreros PMCID: PMC1440880 A supersecondary structure library and search algorithm for modeling loops in protein structures Narcis Fernandez-Fuentes, Baldomero Oliva, and András Fiser PMCID: PMC1440879 Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus Anna Valenti, Alessandra Napoli, Maria Carmina Ferrara, Marc Nadal, Mosè Rossi, and Maria Ciaramella PMCID: PMC1440885 The Drosophila termination factor DmTTF regulates in vivo mitochondrial transcription Marina Roberti, Francesco Bruni, Paola Loguercio Polosa, Maria Nicola Gadaleta, and Palmiro Cantatore PMCID: PMC1450328 Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures Pascale Hazel, Gary N Parkinson, and Stephen Neidle PMCID: PMC1449907 Specific RNA binding to ordered phospholipid bilayers Tadeusz Janas, Teresa Janas, and Michael Yarus PMCID: PMC1449910 Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations Xiaomei Wu, Lei Zhu, Jie Guo, Da-Yong Zhang, and Kui Lin PMCID: PMC1449908 Methods Online An antibody-based microarray assay for small RNA detection Zonglin Hu, Aixia Zhang, Gisela Storz, Susan Gottesman, and Stephen H. Leppla PMCID: PMC1435976 Polycistronic RNA polymerase II expression vectors for RNA interference based on BIC/miR-155 Kwan-Ho Chung, Christopher C. Hart, Sarmad Al-Bassam, Adam Avery, Jennifer Taylor, Paresh D. Patel, Anne B. Vojtek, and David L. Turner PMCID: PMC1435982 A real-time PCR-based method for determining the surface coverage of thiol-capped oligonucleotides bound onto gold nanoparticles Eun-Young Kim, Jennifer Stanton, Rafael A. Vega, Kevin J. Kunstman, Chad A. Mirkin, and Steven M. Wolinsky PMCID: PMC1440878 Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates Stuart Macgregor, Peter M. Visscher, and Grant Montgomery PMCID: PMC1440945 Algorithm for automatic genotype calling of single nucleotide polymorphisms using the full course of TaqMan real-time data A. Callegaro, R. Spinelli, L. Beltrame, S. Bicciato, L. Caristina, S. Censuales, G. De Bellis, and C. Battaglia PMCID: PMC1440877 Corrigendum A TFIIB-like protein is indispensable for spliced leader RNA gene transcription in Trypanosoma brucei Bernd Schimanski, Jens Brandenburg, Tu Ngoc Nguyen, Melissa Jo Caimano, and Arthur Günzl PMCID: PMC1449909 Corrects: Bernd Schimanski, et al. A TFIIB-like protein is indispensable for spliced leader RNA gene transcription in Trypanosoma brucei. Nucleic Acids Res. 2006; 34(6): 1676–1684. |
