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Volume 10(3);  March 2004
Review
A guide to ions and RNA structure
DAVID E. DRAPER
RNA. 2004 March; 10(3): 335–343. doi: 10.1261/rna.5205404.
PMCID: PMC1370927
Meeting Report
The tRNA world
ROLAND K. HARTMANN, MARIO MÖRL, and MATHIAS SPRINZL
RNA. 2004 March; 10(3): 344–349. doi: 10.1261/rna.5240904.
PMCID: PMC1370928
Book Review
RNAi: A Guide to Gene Silencing, edited by Gregory J. Hannon. 2003. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. ISBN: 0-87969-641-9.
Joan A Steitz
RNA. 2004 March; 10(3): 350. doi: 10.1261/rna.5244104.
PMCID: PMC1370929
Letter to the Editor
The Noc proteins involved in ribosome synthesis and export contain divergent HEAT repeats
MENSUR DLAKIĆ and DAVID TOLLERVEY
RNA. 2004 March; 10(3): 351–354. doi: 10.1261/rna.5184704.
PMCID: PMC1370930
Bioinformatics
Prediction of RNA-binding proteins from primary sequence by a support vector machine approach
LIAN YI HAN, CONG ZHONG CAI, SIEW LIN LO, MAXEY C.M. CHUNG, and YU ZONG CHEN
RNA. 2004 March; 10(3): 355–368. doi: 10.1261/rna.5890304.
PMCID: PMC1370931
Articles
Internal loop mutations in the ribosomal protein L30 binding site of the yeast L30 RNA transcript
SUSAN A. WHITE, MARGARET HOEGER, JAMES J. SCHWEPPE, AMANDA SHILLINGFORD, VALERIE SHIPILOV, and JENNIFER ZARUTSKIE
RNA. 2004 March; 10(3): 369–377. doi: 10.1261/rna.2159504.
PMCID: PMC1370932
Nascent-peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA
TAKAFUMI SUNOHARA, KAORU JOJIMA, YASUFUMI YAMAMOTO, TOSHIFUMI INADA, and HIROJI AIBA
RNA. 2004 March; 10(3): 378–386. doi: 10.1261/rna.5169404.
PMCID: PMC1370933
miRNP:mRNA association in polyribosomes in a human neuronal cell line
PETER T. NELSON, ARTEMIS G. HATZIGEORGIOU, and ZISSIMOS MOURELATOS
RNA. 2004 March; 10(3): 387–394. doi: 10.1261/rna.5181104.
PMCID: PMC1370934
Modifications and deletions of helices within the hairpin ribozyme–substrate complex: An active ribozyme lacking helix 1
ROBERT PINARD, DOMINIC LAMBERT, GULNAR POTHIAWALA, FRANÇOIS MAJOR, and JOHN M. BURKE
RNA. 2004 March; 10(3): 395–402. doi: 10.1261/rna.5650904.
PMCID: PMC1370935
Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits
GUNNAR ALKEMAR and ODD NYGÅRD
RNA. 2004 March; 10(3): 403–411. doi: 10.1261/rna.5135204.
PMCID: PMC1370936
Evidence for a base triple in the free HIV-1 TAR RNA
HENDRIK HUTHOFF, FREDERIC GIRARD, SYBREN S. WIJMENGA, and BEN BERKHOUT
RNA. 2004 March; 10(3): 412–423. doi: 10.1261/rna.5161304.
PMCID: PMC1370937
Secondary structure and function of the 5′-proximal region of the equine arteritis virus RNA genome
ERWIN VAN DEN BORN, ALEXANDER P. GULTYAEV, and ERIC J. SNIJDER
RNA. 2004 March; 10(3): 424–437. doi: 10.1261/rna.5174804.
PMCID: PMC1370938
Intracellular expression of engineered RNase P ribozymes effectively blocks gene expression and replication of human cytomegalovirus
KIHOON KIM, SEAN UMAMOTO, PHONG TRANG, RONG HAI, and FENYONG LIU
RNA. 2004 March; 10(3): 438–447. doi: 10.1261/rna.5178404.
PMCID: PMC1370939
Characterization of deadenylation in trypanosome extracts and its inhibition by poly(A)-binding protein Pab1p
JOSEPH MILONE, JEFFREY WILUSZ, and VIVIAN BELLOFATTO
RNA. 2004 March; 10(3): 448–457. doi: 10.1261/rna.5180304.
PMCID: PMC1370940
Inhibition of 5′ to 3′ mRNA degradation under stress conditions in Saccharomyces cerevisiae: from GCN4 to MET16
LIONEL BENARD
RNA. 2004 March; 10(3): 458–468. doi: 10.1261/rna.5183804.
PMCID: PMC1370941
Translation of cellular inhibitor of apoptosis protein 1 (c-IAP1) mRNA is IRES mediated and regulated during cell stress
MARC E. VAN EDEN, MARSHALL P. BYRD, KYLE W. SHERRILL, and RICHARD E. LLOYD
RNA. 2004 March; 10(3): 469–481. doi: 10.1261/rna.5156804.
PMCID: PMC1370942
Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit
ALESSANDRA BARRERA and TAO PAN
RNA. 2004 March; 10(3): 482–492. doi: 10.1261/rna.5163104.
PMCID: PMC1370943
Functional group recognition at the aminoacylation and editing sites of E. coli valyl-tRNA synthetase
KEITH D. TARDIF and JACK HOROWITZ
RNA. 2004 March; 10(3): 493–503. doi: 10.1261/rna.5166704.
PMCID: PMC1370944
Characterization of two distinct RNA domains that regulate translation of the Drosophila gypsy retroelement
CORINNE RONFORT, SYLVAIN DE BREYNE, VIRGINIE SANDRIN, JEAN-LUC DARLIX, and THÉOPHILE OHLMANN
RNA. 2004 March; 10(3): 504–515. doi: 10.1261/rna.5185604.
PMCID: PMC1370945
Biostable aptamers with antagonistic properties to the neuropeptide nociceptin/orphanin FQ
DIRK FAULHAMMER, BERND ESCHGFÄLLER, SANDRA STARK, PETRA BURGSTALLER, WERNER ENGLBERGER, JEANNETTE ERFURTH, FRANK KLEINJUNG, JOHANNA RUPP, SEBASTIAN DAN VULCU, WERNER SCHRÖDER, STEFAN VONHOFF, HERMANN NAWRATH, CLEMENS GILLEN, and SVEN KLUSSMANN
RNA. 2004 March; 10(3): 516–527. doi: 10.1261/rna.5186504.
PMCID: PMC1370946
Eukaryotic protein synthesis inhibitors identified by comparison of cytotoxicity profiles
JENNY CHAN, SHAKILA N. KHAN, ISABELLE HARVEY, WILLIAM MERRICK, and JERRY PELLETIER
RNA. 2004 March; 10(3): 528–543. doi: 10.1261/rna.5200204.
PMCID: PMC1370947
Method
Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing
GUNTER MEISTER, MARKUS LANDTHALER, YAIR DORSETT, and THOMAS TUSCHL
RNA. 2004 March; 10(3): 544–550. doi: 10.1261/rna.5235104.
PMCID: PMC1370948
Erratum
A microRNA array reveals extensive regulation of microRNAs during brain development
ANNA M. KRICHEVSKY, KEVIN S. KING, CHRISTINE P. DONAHUE, KONSTANTIN KHRAPKO, and KENNETH S. KOSIK
RNA. 2004 March; 10(3): 551.
PMCID: PMC1370949
Corrects: ANNA M. KRICHEVSKY, et al. A microRNA array reveals extensive regulation of microRNAs during brain development. RNA. 2003 October; 9(10): 1274–1281.
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