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Volume 139(3);  November 2005
Update
Switching the Cell Cycle. Kip-Related Proteins in Plant Cell Cycle Control
Aurine Verkest, Christina Weinl, Dirk Inzé, Lieven De Veylder, and Arp Schnittger
Plant Physiol. 2005 November; 139(3): 1099–1106. doi: 10.1104/pp.105.069906.
PMCID: PMC1283750
On the Inside
On the Inside
Peter V. Minorsky
Plant Physiol. 2005 November; 139(3): 1097–1098. doi: 10.1104/pp.104.900177.
PMCID: PMC1283749
Breakthrough Technologies
A Novel Approach for Nontargeted Data Analysis for Metabolomics. Large-Scale Profiling of Tomato Fruit Volatiles
Yury Tikunov, Arjen Lommen, C.H. Ric de Vos, Harrie A. Verhoeven, Raoul J. Bino, Robert D. Hall, and Arnaud G. Bovy
Plant Physiol. 2005 November; 139(3): 1125–1137. doi: 10.1104/pp.105.068130.
PMCID: PMC1283752
Genome Analysis
Evolutionary Expansion, Gene Structure, and Expression of the Rice Wall-Associated Kinase Gene Family
Shibo Zhang, Calvin Chen, Lei Li, Ling Meng, Jaswinder Singh, Ning Jiang, Xing-Wang Deng, Zheng-Hui He, and Peggy G. Lemaux
Plant Physiol. 2005 November; 139(3): 1107–1124. doi: 10.1104/pp.105.069005.
PMCID: PMC1283751
Research Articles
Biochemical Processes and Macromolecular Structures
Cloning and Molecular Characterization of the Basic Peroxidase Isoenzyme from Zinnia elegans, an Enzyme Involved in Lignin Biosynthesis
Carlos Gabaldón, Matías López-Serrano, María A. Pedreño, and A. Ros Barceló
Plant Physiol. 2005 November; 139(3): 1138–1154. doi: 10.1104/pp.105.069674.
PMCID: PMC1283753
Identification of Three Urease Accessory Proteins That Are Required for Urease Activation in Arabidopsis
Claus-Peter Witte, Mario G. Rosso, and Tina Romeis
Plant Physiol. 2005 November; 139(3): 1155–1162. doi: 10.1104/pp.105.070292.
PMCID: PMC1283754
Differential Expression of Sucrose-Phosphate Synthase Isoenzymes in Tobacco Reflects Their Functional Specialization during Dark-Governed Starch Mobilization in Source Leaves
Shuai Chen, Mohammad Hajirezaei, and Frederik Börnke
Plant Physiol. 2005 November; 139(3): 1163–1174. doi: 10.1104/pp.105.069468.
PMCID: PMC1283755
Reconstitution and Properties of the Recombinant Glyceraldehyde-3-Phosphate Dehydrogenase/CP12/Phosphoribulokinase Supramolecular Complex of Arabidopsis
Lucia Marri, Paolo Trost, Paolo Pupillo, and Francesca Sparla
Plant Physiol. 2005 November; 139(3): 1433–1443. doi: 10.1104/pp.105.068445.
PMCID: PMC1283778
Bioenergetics and Photosynthesis
PsbP Protein, But Not PsbQ Protein, Is Essential for the Regulation and Stabilization of Photosystem II in Higher Plants
Kentaro Ifuku, Yumiko Yamamoto, Taka-aki Ono, Seiko Ishihara, and Fumihiko Sato
Plant Physiol. 2005 November; 139(3): 1175–1184. doi: 10.1104/pp.105.068643.
PMCID: PMC1283756
Evidence That Bicarbonate Is Not the Substrate in Photosynthetic Oxygen Evolution
Juergen Clausen, Katrin Beckmann, Wolfgang Junge, and Johannes Messinger
Plant Physiol. 2005 November; 139(3): 1444–1450. doi: 10.1104/pp.105.068437.
PMCID: PMC1283779
Three Maize Leaf Ferredoxin:NADPH Oxidoreductases Vary in Subchloroplast Location, Expression, and Interaction with Ferredoxin
Satoshi Okutani, Guy T. Hanke, Yoshinori Satomi, Toshifumi Takao, Genji Kurisu, Akira Suzuki, and Toshiharu Hase
Plant Physiol. 2005 November; 139(3): 1451–1459. doi: 10.1104/pp.105.070813.
PMCID: PMC1283780
Cell Biology and Signal Transduction
ABR1, an APETALA2-Domain Transcription Factor That Functions as a Repressor of ABA Response in Arabidopsis
Girdhar K. Pandey, John J. Grant, Yong Hwa Cheong, Beom Gi Kim, Legong Li, and Sheng Luan
Plant Physiol. 2005 November; 139(3): 1185–1193. doi: 10.1104/pp.105.066324.
PMCID: PMC1283757
Increased Calcium Levels and Prolonged Shelf Life in Tomatoes Expressing Arabidopsis H+/Ca2+ Transporters
Sunghun Park, Ning Hui Cheng, Jon K. Pittman, Kil Sun Yoo, Jungeun Park, Roberta H. Smith, and Kendal D. Hirschi
Plant Physiol. 2005 November; 139(3): 1194–1206. doi: 10.1104/pp.105.066266.
PMCID: PMC1283758
The Dynamic Changes of Tonoplasts in Guard Cells Are Important for Stomatal Movement in Vicia faba
Xin-Qi Gao, Chun-Guang Li, Peng-Cheng Wei, Xin-Yan Zhang, Jia Chen, and Xue-Chen Wang
Plant Physiol. 2005 November; 139(3): 1207–1216. doi: 10.1104/pp.105.067520.
PMCID: PMC1283759
The Cold-Induced Early Activation of Phospholipase C and D Pathways Determines the Response of Two Distinct Clusters of Genes in Arabidopsis Cell Suspensions
Chantal Vergnolle, Marie-Noëlle Vaultier, Ludivine Taconnat, Jean-Pierre Renou, Jean-Claude Kader, Alain Zachowski, and Eric Ruelland
Plant Physiol. 2005 November; 139(3): 1217–1233. doi: 10.1104/pp.105.068171.
PMCID: PMC1283760
Arabidopsis FHY1 Protein Stability Is Regulated by Light via Phytochrome A and 26S Proteasome
Yunping Shen, Suhua Feng, Ligeng Ma, Rongcheng Lin, Li-Jia Qu, Zhangliang Chen, Haiyang Wang, and Xing Wang Deng
Plant Physiol. 2005 November; 139(3): 1234–1243. doi: 10.1104/pp.105.067645.
PMCID: PMC1283761
Sec22 and Memb11 Are v-SNAREs of the Anterograde Endoplasmic Reticulum-Golgi Pathway in Tobacco Leaf Epidermal Cells
Laurent Chatre, Federica Brandizzi, Agnès Hocquellet, Chris Hawes, and Patrick Moreau
Plant Physiol. 2005 November; 139(3): 1244–1254. doi: 10.1104/pp.105.067447.
PMCID: PMC1283762
Development and Hormone Action
Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize Lateral and Seminal Root Initiation Mutant rum1
Katrin Woll, Lisa A. Borsuk, Harald Stransky, Dan Nettleton, Patrick S. Schnable, and Frank Hochholdinger
Plant Physiol. 2005 November; 139(3): 1255–1267. doi: 10.1104/pp.105.067330.
PMCID: PMC1283763
12-Oxo-Phytodienoic Acid Triggers Expression of a Distinct Set of Genes and Plays a Role in Wound-Induced Gene Expression in Arabidopsis
Nozomi Taki, Yuko Sasaki-Sekimoto, Takeshi Obayashi, Akihiro Kikuta, Koichi Kobayashi, Takayuki Ainai, Kaori Yagi, Nozomu Sakurai, Hideyuki Suzuki, Tatsuru Masuda, Ken-ichiro Takamiya, Daisuke Shibata, Yuichi Kobayashi, and Hiroyuki Ohta
Plant Physiol. 2005 November; 139(3): 1268–1283. doi: 10.1104/pp.105.067058.
PMCID: PMC1283764
A Mutation in the Anticodon of a Single tRNAala Is Sufficient to Confer Auxin Resistance in Arabidopsis
Jason Perry, Xinhua Dai, and Yunde Zhao
Plant Physiol. 2005 November; 139(3): 1284–1290. doi: 10.1104/pp.105.068700.
PMCID: PMC1283765
The rib1 Mutant of Arabidopsis Has Alterations in Indole-3-Butyric Acid Transport, Hypocotyl Elongation, and Root Architecture
Julie Poupart, Aaron M. Rashotte, Gloria K. Muday, and Candace S. Waddell
Plant Physiol. 2005 November; 139(3): 1460–1471. doi: 10.1104/pp.105.067967.
PMCID: PMC1283781
Cryptochrome 1 Contributes to Blue-Light Sensing in Pea
J. Damien Platten, Eloise Foo, Robert C. Elliott, Valérie Hecht, James B. Reid, and James L. Weller
Plant Physiol. 2005 November; 139(3): 1472–1482. doi: 10.1104/pp.105.067462.
PMCID: PMC1283782
Functional Interaction between Two Transcription Factors Involved in the Developmental Regulation of a Small Heat Stress Protein Gene Promoter
Juan Díaz-Martín, Concepción Almoguera, Pilar Prieto-Dapena, José M. Espinosa, and Juan Jordano
Plant Physiol. 2005 November; 139(3): 1483–1494. doi: 10.1104/pp.105.069963.
PMCID: PMC1283783
Environmental Stress and Adaptation to Stress
Ascorbic Acid Deficiency Activates Cell Death and Disease Resistance Responses in Arabidopsis
Valeria Pavet, Enrique Olmos, Guy Kiddle, Shaheen Mowla, Sanjay Kumar, John Antoniw, María E. Alvarez, and Christine H. Foyer
Plant Physiol. 2005 November; 139(3): 1291–1303. doi: 10.1104/pp.105.067686.
PMCID: PMC1283766
Genetic and Molecular Analyses of Natural Variation Indicate CBF2 as a Candidate Gene for Underlying a Freezing Tolerance Quantitative Trait Locus in Arabidopsis
Carlos Alonso-Blanco, Concepción Gomez-Mena, Francisco Llorente, Maarten Koornneef, Julio Salinas, and José M. Martínez-Zapater
Plant Physiol. 2005 November; 139(3): 1304–1312. doi: 10.1104/pp.105.068510.
PMCID: PMC1283767
Enhanced Tolerance to Environmental Stress in Transgenic Plants Expressing the Transcriptional Coactivator Multiprotein Bridging Factor 1c
Nobuhiro Suzuki, Ludmila Rizhsky, Hongjian Liang, Joel Shuman, Vladimir Shulaev, and Ron Mittler
Plant Physiol. 2005 November; 139(3): 1313–1322. doi: 10.1104/pp.105.070110.
PMCID: PMC1283768
HKT1 Mediates Sodium Uniport in Roots. Pitfalls in the Expression of HKT1 in Yeast
Rosario Haro, María A. Bañuelos, María E. Senn, Javier Barrero-Gil, and Alonso Rodríguez-Navarro
Plant Physiol. 2005 November; 139(3): 1495–1506. doi: 10.1104/pp.105.067553.
PMCID: PMC1283784
Salt Stress in Thellungiella halophila Activates Na+ Transport Mechanisms Required for Salinity Tolerance
Rosario Vera-Estrella, Bronwyn J. Barkla, Liliana García-Ramírez, and Omar Pantoja
Plant Physiol. 2005 November; 139(3): 1507–1517. doi: 10.1104/pp.105.067850.
PMCID: PMC1283785
Overexpression of AtCpNifS Enhances Selenium Tolerance and Accumulation in Arabidopsis
Douglas Van Hoewyk, Gulnara F. Garifullina, Ashley R. Ackley, Salah E. Abdel-Ghany, Matthew A. Marcus, Sirine Fakra, Keiki Ishiyama, Eri Inoue, Marinus Pilon, Hideki Takahashi, and Elizabeth A.H. Pilon-Smits
Plant Physiol. 2005 November; 139(3): 1518–1528. doi: 10.1104/pp.105.068684.
PMCID: PMC1283786
Genetics, Genomics, and Molecular Evolution
Analysis of the cDNAs of Hypothetical Genes on Arabidopsis Chromosome 2 Reveals Numerous Transcript Variants
Yong-Li Xiao, Shannon R. Smith, Nadeeza Ishmael, Julia C. Redman, Nihkil Kumar, Erin L. Monaghan, Mulu Ayele, Brian J. Haas, Hank C. Wu, and Christopher D. Town
Plant Physiol. 2005 November; 139(3): 1323–1337. doi: 10.1104/pp.105.063479.
PMCID: PMC1283769
Plant-Derived Transfer DNAs
Caius M. Rommens, Oleg Bougri, Hua Yan, Jaime M. Humara, Joanna Owen, Kathy Swords, and Jingsong Ye
Plant Physiol. 2005 November; 139(3): 1338–1349. doi: 10.1104/pp.105.068692.
PMCID: PMC1283770
Transcriptome Analysis Reveals Specific Modulation of Abscisic Acid Signaling by ROP10 Small GTPase in Arabidopsis
Zeyu Xin, Yihong Zhao, and Zhi-Liang Zheng
Plant Physiol. 2005 November; 139(3): 1350–1365. doi: 10.1104/pp.105.068064.
PMCID: PMC1283771
Variations in CYP74B2 (Hydroperoxide Lyase) Gene Expression Differentially Affect Hexenal Signaling in the Columbia and Landsberg erecta Ecotypes of Arabidopsis
Hui Duan, Meng-Yu Huang, Kathryn Palacio, and Mary A. Schuler
Plant Physiol. 2005 November; 139(3): 1529–1544. doi: 10.1104/pp.105.067249.
PMCID: PMC1283787
Plants Interacting with Other Organisms
Gibberellins Are Involved in Nodulation of Sesbania rostrata
Sam Lievens, Sofie Goormachtig, Jeroen Den Herder, Ward Capoen, René Mathis, Peter Hedden, and Marcelle Holsters
Plant Physiol. 2005 November; 139(3): 1366–1379. doi: 10.1104/pp.105.066944.
PMCID: PMC1283772
The Polygalacturonase-Inhibiting Protein PGIP2 of Phaseolus vulgaris Has Evolved a Mixed Mode of Inhibition of Endopolygalacturonase PG1 of Botrytis cinerea
Francesca Sicilia, Juan Fernandez-Recio, Claudio Caprari, Giulia De Lorenzo, Demetrius Tsernoglou, Felice Cervone, and Luca Federici
Plant Physiol. 2005 November; 139(3): 1380–1388. doi: 10.1104/pp.105.067546.
PMCID: PMC1283773
Nectarin IV, a Potent Endoglucanase Inhibitor Secreted into the Nectar of Ornamental Tobacco Plants. Isolation, Cloning, and Characterization
S.M. Saqlan Naqvi, April Harper, Clay Carter, Gang Ren, Adel Guirgis, William S. York, and Robert W. Thornburg
Plant Physiol. 2005 November; 139(3): 1389–1400. doi: 10.1104/pp.105.065227.
PMCID: PMC1283774
Suppression of Allene Oxide Cyclase in Hairy Roots of Medicago truncatula Reduces Jasmonate Levels and the Degree of Mycorrhization with Glomus intraradices
Stanislav Isayenkov, Cornelia Mrosk, Irene Stenzel, Dieter Strack, and Bettina Hause
Plant Physiol. 2005 November; 139(3): 1401–1410. doi: 10.1104/pp.105.069054.
PMCID: PMC1283775
Arabidopsis Vegetative Storage Protein Is an Anti-Insect Acid Phosphatase
Yilin Liu, Ji-Eun Ahn, Sumana Datta, Ron A. Salzman, Jaewoong Moon, Beatrice Huyghues-Despointes, Barry Pittendrigh, Larry L. Murdock, Hisashi Koiwa, and Keyan Zhu-Salzman
Plant Physiol. 2005 November; 139(3): 1545–1556. doi: 10.1104/pp.105.066837.
PMCID: PMC1283788
Systems Biology, Molecular Biology, and Gene Regulation
An Egg Apparatus-Specific Enhancer of Arabidopsis, Identified by Enhancer Detection
Wei Yang, Richard A. Jefferson, Eric Huttner, James M. Moore, Wendy B. Gagliano, and Ueli Grossniklaus
Plant Physiol. 2005 November; 139(3): 1421–1432. doi: 10.1104/pp.105.068262.
PMCID: PMC1283777
Whole Plant and Ecophysiology
Differential Capacity for High-Affinity Manganese Uptake Contributes to Differences between Barley Genotypes in Tolerance to Low Manganese Availability
Pai Pedas, Christopher A. Hebbern, Jan K. Schjoerring, Peter E. Holm, and Søren Husted
Plant Physiol. 2005 November; 139(3): 1411–1420. doi: 10.1104/pp.105.067561.
PMCID: PMC1283776
Independent Roles for EARLY FLOWERING 3 and ZEITLUPE in the Control of Circadian Timing, Hypocotyl Length, and Flowering Time
Woe-Yeon Kim, Karen A. Hicks, and David E. Somers
Plant Physiol. 2005 November; 139(3): 1557–1569. doi: 10.1104/pp.105.067173.
PMCID: PMC1283789
Correction
CORRECTION
Plant Physiol. 2005 November; 139(3): 1570. doi: 10.1104/pp.104.900178.
PMCID: PMC1283790
Corrects: Melissa P. Mezzari, et al. Gene Expression and Microscopic Analysis of Arabidopsis Exposed to Chloroacetanilide Herbicides and Explosive Compounds. A Phytoremediation Approach. Plant Physiol. 2005 June; 138(2): 858–869.
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