| | This journal provides immediate access to some articles. In This Issue Proc Natl Acad Sci U S A. 2005 August 16; 102(33): 11569–11570. doi: 10.1073/iti3305102.PMCID: PMC1188018 Commentaries Mechanical control of tissue growth: Function follows form Donald E. Ingber PMCID: PMC1188017 Centromere renewal and replacement in the plant kingdom R. Kelly Dawe PMCID: PMC1187995 Perspective Ubiquitin at Fox Chase Irwin A. Rose PMCID: PMC1187975 Profile Profile of Diane E. Griffin Nick Zagorski PMCID: PMC1188013 Physical Sciences Applied Physical Sciences Direct measurement of electrical transport through single DNA molecules of complex sequence Hezy Cohen, Claude Nogues, Ron Naaman, and Danny Porath PMCID: PMC1188002 From the Cover:
Emergent patterns of growth controlled by multicellular form and mechanics Celeste M. Nelson, Ronald P. Jean, John L. Tan, Wendy F. Liu, Nathan J. Sniadecki, Alexander A. Spector, and Christopher S. Chen PMCID: PMC1187971 Chemistry Carbon nanotubes as multifunctional biological transporters and near-infrared agents for selective cancer cell destruction Nadine Wong Shi Kam, Michael O'Connell, Jeffrey A. Wisdom, and Hongjie Dai PMCID: PMC1187972 Single-nucleotide polymorphism detection with “wire-like” DNA probes that display quasi “on–off” digital action Masahiko Inouye, Reona Ikeda, Masayoshi Takase, Takashi Tsuri, and Junya Chiba PMCID: PMC1183446 Polarizable molecules in the vibrational spectroscopy of water Edward Harder, Joel D. Eaves, Andrei Tokmakoff, and B. J. Berne PMCID: PMC1187998 Convergent evolution of chemical defense in poison frogs and arthropod prey between Madagascar and the Neotropics Valerie C. Clark, Christopher J. Raxworthy, Valérie Rakotomalala, Petra Sierwald, and Brian L. Fisher PMCID: PMC1187980 Computer Sciences From the Cover:
Geographic routing in social networks David Liben-Nowell, Jasmine Novak, Ravi Kumar, Prabhakar Raghavan, and Andrew Tomkins PMCID: PMC1187977 Unsupervised learning of natural languages Zach Solan, David Horn, Eytan Ruppin, and Shimon Edelman PMCID: PMC1187953 Geology Asynchronous extinction of late Quaternary sloths on continents and islands David W. Steadman, Paul S. Martin, Ross D. E. MacPhee, A. J. T. Jull, H. Gregory McDonald, Charles A. Woods, Manuel Iturralde-Vinent, and Gregory W. L. Hodgins PMCID: PMC1187974 Physics Nearsightedness of electronic matter E. Prodan and W. Kohn PMCID: PMC1188007 Structure and fluctuations of a single floating lipid bilayer J. Daillant, E. Bellet-Amalric, A. Braslau, T. Charitat, G. Fragneto, F. Graner, S. Mora, F. Rieutord, and B. Stidder PMCID: PMC1183447 Biological Sciences Biochemistry Vitamin C biosynthesis in trypanosomes: A role for the glycosome Shane R. Wilkinson, S. Radhika Prathalingam, Martin C. Taylor, David Horn, and John M. Kelly PMCID: PMC1187986 From the Cover:
Location analysis of estrogen receptor α target promoters reveals that FOXA1 defines a domain of the estrogen response Josée Laganière, Geneviève Deblois, Céline Lefebvre, Alain R. Bataille, François Robert, and Vincent Giguère PMCID: PMC1183449 Fractal intermediates in the self-assembly of silicatein filaments Meredith M. Murr and Daniel E. Morse PMCID: PMC1187983 Cyclin-dependent kinase (CDK) phosphorylation destabilizes somatic Wee1 via multiple pathways Nobumoto Watanabe, Harumi Arai, Jun-ichi Iwasaki, Masaaki Shiina, Kazuhiro Ogata, Tony Hunter, and Hiroyuki Osada PMCID: PMC1187955 Molecular basis of alanine discrimination in editing site Masaaki Sokabe, Ayuko Okada, Min Yao, Takashi Nakashima, and Isao Tanaka PMCID: PMC1187966 Activation of the plant plasma membrane H+-ATPase by phosphorylation and binding of 14-3-3 proteins converts a dimer into a hexamer Justyna Kanczewska, Sergio Marco, Caroline Vandermeeren, Olivier Maudoux, Jean-Louis Rigaud, and Marc Boutry PMCID: PMC1187987 Hyperphosphorylation regulates the activity of SREBP1 during mitosis Maria T. Bengoechea-Alonso, Tanel Punga, and Johan Ericsson PMCID: PMC1187962 Crystallization of a mammalian membrane protein overexpressed in Saccharomyces cerevisiae Marie Jidenko, Rikke C. Nielsen, Thomas Lykke-Møller Sørensen, Jesper V. Møller, Marc le Maire, Poul Nissen, and Christine Jaxel PMCID: PMC1187984 Biophysics Protein-folding landscapes in multichain systems Troy Cellmer, Dusan Bratko, John M. Prausnitz, and Harvey Blanch PMCID: PMC1188005 Unusual compactness of a polyproline type II structure Bojan Zagrovic, Jan Lipfert, Eric J. Sorin, Ian S. Millett, Wilfred F. van Gunsteren, Sebastian Doniach, and Vijay S. Pande PMCID: PMC1187952 Ligand migration pathway and protein dynamics in myoglobin: A time-resolved crystallographic study on L29W MbCO Marius Schmidt, Karin Nienhaus, Reinhard Pahl, Angela Krasselt, Spencer Anderson, Fritz Parak, G. Ulrich Nienhaus, and Vukica Šrajer PMCID: PMC1187994 A priori prediction of adsorption isotherm parameters and chromatographic behavior in ion-exchange systems Asif Ladiwala, Kaushal Rege, Curtis M. Breneman, and Steven M. Cramer PMCID: PMC1187950 Cell Biology From the Cover:
Emergent patterns of growth controlled by multicellular form and mechanics Celeste M. Nelson, Ronald P. Jean, John L. Tan, Wendy F. Liu, Nathan J. Sniadecki, Alexander A. Spector, and Christopher S. Chen PMCID: PMC1187971 Genetic reprogramming of tumor cells by zinc finger transcription factors Pilar Blancafort, Emily I. Chen, Beatriz Gonzalez, Sharon Bergquist, Andries Zijlstra, Daniel Guthy, Arndt Brachat, Ruud H. Brakenhoff, James P. Quigley, Dirk Erdmann, and Carlos F. Barbas, III PMCID: PMC1187960 Blood–testis barrier dynamics are regulated by an engagement/disengagement mechanism between tight and adherens junctions via peripheral adaptors Helen H. N. Yan and C. Yan Cheng PMCID: PMC1183102 NF-Ya activates multiple hematopoietic stem cell (HSC) regulatory genes and promotes HSC self-renewal Jiang Zhu, Yi Zhang, Gerard J. Joe, Richard Pompetti, and Stephen G. Emerson PMCID: PMC1187979 Developmental Biology From the Cover:
Molecular evidence for an activator–inhibitor mechanism in development of embryonic feather branching Matthew P. Harris, Scott Williamson, John F. Fallon, Hans Meinhardt, and Richard O. Prum PMCID: PMC1187956 Targeted disruption of Mig-6 in the mouse genome leads to early onset degenerative joint disease Yu-Wen Zhang, Yanli Su, Nathan Lanning, Pamela J. Swiatek, Roderick T. Bronson, Robert Sigler, Richard W. Martin, and George F. Vande Woude PMCID: PMC1187996 Tissue morphogenesis and vascular stability require the Frem2 protein, product of the mouse myelencephalic blebs gene John R. Timmer, Tracy W. Mak, Katia Manova, Kathryn V. Anderson, and Lee Niswander PMCID: PMC1183448 Precocious metamorphosis in transgenic silkworms overexpressing juvenile hormone esterase Anjang Tan, Hiromasa Tanaka, Toshiki Tamura, and Takahiro Shiotsuki PMCID: PMC1187958 Caenorhabditis elegans CNK-1 promotes Raf activation but is not essential for Ras/Raf signaling Christian E. Rocheleau, Agneta Rönnlund, Simon Tuck, and Meera V. Sundaram PMCID: PMC1187957 Ecology Convergent evolution of chemical defense in poison frogs and arthropod prey between Madagascar and the Neotropics Valerie C. Clark, Christopher J. Raxworthy, Valérie Rakotomalala, Petra Sierwald, and Brian L. Fisher PMCID: PMC1187980 Asynchronous extinction of late Quaternary sloths on continents and islands David W. Steadman, Paul S. Martin, Ross D. E. MacPhee, A. J. T. Jull, H. Gregory McDonald, Charles A. Woods, Manuel Iturralde-Vinent, and Gregory W. L. Hodgins PMCID: PMC1187974 Evolution An evolutionary constraint: Strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules R. Andrew Cameron, Suk Hen Chow, Kevin Berney, Tsz-Yeung Chiu, Qiu-Autumn Yuan, Alexander Krämer, Argelia Helguero, Andrew Ransick, Mirong Yun, and Eric H. Davidson PMCID: PMC1188003 Circuit topology and the evolution of robustness in two-gene circadian oscillators Andreas Wagner PMCID: PMC1183445 Diverse DNA transposons in rotifers of the class Bdelloidea Irina R. Arkhipova and Matthew Meselson PMCID: PMC1188004 Genetics Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting Austen R. D. Ganley, Kouji Hayashi, Takashi Horiuchi, and Takehiko Kobayashi PMCID: PMC1182552 From the Cover:
Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species Hye-Ran Lee, Wenli Zhang, Tim Langdon, Weiwei Jin, Huihuang Yan, Zhukuan Cheng, and Jiming Jiang PMCID: PMC1187982 Myc interacts genetically with Tip48/Reptin and Tip49/Pontin to control growth and proliferation during Drosophila development Paola Bellosta, Toby Hulf, Soda Balla Diop, Fabrice Usseglio, Jacques Pradel, Denise Aragnol, and Peter Gallant PMCID: PMC1187951 Immunology NKG2D-independent suppression of T cell proliferation by H60 and MICA Anja K. Kriegeskorte, Friedemann E. Gebhardt, Simona Porcellini, Matthias Schiemann, Christian Stemberger, Tobias J. Franz, Katharina M. Huster, Leon N. Carayannopoulos, Wayne M. Yokoyama, Marco Colonna, Antonio G. Siccardi, Stefan Bauer, and Dirk H. Busch PMCID: PMC1187963 CD1d ligation on human monocytes directly signals rapid NF-κB activation and production of bioactive IL-12 Simon C. Yue, Angela Shaulov, Ruojie Wang, Steven P. Balk, and Mark A. Exley PMCID: PMC1187978 IL-10-dependent infectious tolerance after the treatment of experimental allergic encephalomyelitis with redirected CD4+CD25+ T lymphocytes Divya J. Mekala, Rajshekhar S. Alli, and Terrence L. Geiger PMCID: PMC1188008 Establishment of NOD-Pdcd1-/- mice as an efficient animal model of type I diabetes Jian Wang, Taku Yoshida, Fumio Nakaki, Hiroshi Hiai, Taku Okazaki, and Tasuku Honjo PMCID: PMC1188011 Complex regulation of somatic hypermutation by cis-acting sequences in the endogenous IgH gene in hybridoma cells Diana Ronai, Maria Dolores Iglesias-Ussel, Manxia Fan, Marc J. Shulman, and Matthew D. Scharff PMCID: PMC1188009 Medical Sciences A map of the human genome in linkage disequilibrium units W. Tapper, A. Collins, J. Gibson, N. Maniatis, S. Ennis, and N. E. Morton PMCID: PMC1188000 Clioquinol down-regulates mutant huntingtin expression in vitro and mitigates pathology in a Huntington's disease mouse model Trent Nguyen, Aaron Hamby, and Stephen M. Massa PMCID: PMC1187967 Advanced glycation endproduct-induced aging of the retinal pigment epithelium and choroid: A comprehensive transcriptional response Jane Tian, Kazuki Ishibashi, Kazuko Ishibashi, Karen Reiser, Rhonda Grebe, Shyam Biswal, Peter Gehlbach, and James T. Handa PMCID: PMC1182551 The vast majority of bone-marrow-derived cells integrated into mdx muscle fibers are silent despite long-term engraftment Gerlinde Wernig, Viktor Janzen, Ralf Schäfer, Margit Zweyer, Ulrich Knauf, Oliver Hoegemeier, Rustam R. Mundegar, Stefan Garbe, Sebastian Stier, Thomas Franz, Marius Wernig, and Anton Wernig PMCID: PMC1187970 Epithelial membrane protein-1 is a biomarker of gefitinib resistance Anjali Jain, Charles A. Tindell, Isett Laux, Jacob B. Hunter, John Curran, Anna Galkin, Daniel E. Afar, Nina Aronson, Steven Shak, Ronald B. Natale, and David B. Agus PMCID: PMC1187965 Pooled association genome scanning: Validation and use to identify addiction vulnerability loci in two samples Qing-Rong Liu, Tomas Drgon, Donna Walther, Catherine Johnson, Oxanna Poleskaya, Judith Hess, and George R. Uhl PMCID: PMC1183486 Inactivation of phosphorylated endothelial nitric oxide synthase (Ser-1177) by O-GlcNAc in diabetes-associated erectile dysfunction Biljana Musicki, Melissa F. Kramer, Robyn E. Becker, and Arthur L. Burnett PMCID: PMC1187969 Microbiology INAUGURAL ARTICLE by a Recently Elected Academy Member: Modulation of disease, T cell responses, and measles virus clearance in monkeys vaccinated with H-encoding alphavirus replicon particles Chien-Hsiung Pan, Alexandra Valsamakis, Teresa Colella, Nitya Nair, Robert J. Adams, Fernando P. Polack, Catherine E. Greer, Silvia Perri, John M. Polo, and Diane E. Griffin PMCID: PMC1187989 Inhibitors of cathepsin L prevent severe acute respiratory syndrome coronavirus entry Graham Simmons, Dhaval N. Gosalia, Andrew J. Rennekamp, Jacqueline D. Reeves, Scott L. Diamond, and Paul Bates PMCID: PMC1188015 Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis Dali Liu, Bryan W. Lepore, Gregory A. Petsko, Pei W. Thomas, Everett M. Stone, Walter Fast, and Dagmar Ringe PMCID: PMC1187999 Neuroscience The striatofugal fiber system in primates: A reevaluation of its organization based on single-axon tracing studies Martin Lévesque and André Parent PMCID: PMC1187973 Egr3 stimulation of GABRA4 promoter activity as a mechanism for seizure-induced up-regulation of GABAA receptor α4 subunit expression D. S. Roberts, Y. H. Raol, S. Bandyopadhyay, I. V. Lund, E. C. Budreck, M. J. Passini, J. H. Wolfe, A. R. Brooks-Kayal, and S. J. Russek PMCID: PMC1187961 Apolipoprotein E allele-dependent pathogenesis: A model for age-related retinal degeneration G. Malek, L. V. Johnson, B. E. Mace, P. Saloupis, D. E. Schmechel, D. W. Rickman, C. A. Toth, P. M. Sullivan, and C. Bowes Rickman PMCID: PMC1187976 Monitoring disease progression in transgenic mouse models of Alzheimer's disease with proton magnetic resonance spectroscopy Malgorzata Marjanska, Geoffrey L. Curran, Thomas M. Wengenack, Pierre-Gilles Henry, Robin L. Bliss, Joseph F. Poduslo, Clifford R. Jack, Jr., Kâmil Uğurbil, and Michael Garwood PMCID: PMC1188012 Physiology In situ measurement of solute transport in the bone lacunar-canalicular system Liyun Wang, Yilin Wang, Yuefeng Han, Scott C. Henderson, Robert J. Majeska, Sheldon Weinbaum, and Mitchell B. Schaffler PMCID: PMC1187997 Interferon-α and -β differentially regulate osteoclastogenesis: Role of differential induction of chemokine CXCL11 expression Luiz F. Leomil Coelho, Gabriel Magno de Freitas Almeida, Franck J. D. Mennechet, Anne Blangy, and Gilles Uzé PMCID: PMC1187968 The metabolic basis of whole-organism RNA and phosphorus content James F. Gillooly, Andrew P. Allen, James H. Brown, James J. Elser, Carlos Martinez del Rio, Van M. Savage, Geoffrey B. West, William H. Woodruff, and H. Arthur Woods PMCID: PMC1187991 Plant Biology Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs N. Baumberger and D. C. Baulcombe PMCID: PMC1182554 A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation Julie Misson, Kashchandra G. Raghothama, Ajay Jain, Juliette Jouhet, Maryse A. Block, Richard Bligny, Philippe Ortet, Audrey Creff, Shauna Somerville, Norbert Rolland, Patrick Doumas, Philippe Nacry, Luis Herrerra-Estrella, Laurent Nussaume, and Marie-Christine Thibaud PMCID: PMC1188001 Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems Asuka Nishimura, Motoyuki Ashikari, Shaoyang Lin, Tomonori Takashi, Enrique R. Angeles, Toshio Yamamoto, and Makoto Matsuoka PMCID: PMC1187985 Subdomains for transport via plasmodesmata corresponding to the apical–basal axis are established during Arabidopsis embryogenesis Insoon Kim, Ken Kobayashi, Euna Cho, and Patricia C. Zambryski PMCID: PMC1188016 Social Sciences Anthropology Kinship-based politics and the optimal size of kin groups E. A. Hammel PMCID: PMC1187990 Social Sciences From the Cover:
Geographic routing in social networks David Liben-Nowell, Jasmine Novak, Ravi Kumar, Prabhakar Raghavan, and Andrew Tomkins PMCID: PMC1187977 |
