| | This journal provides immediate access to some articles. From the Academy Election to the National Academy of Sciences: Pathways to membership Bruce Alberts and Kenneth R. Fulton PMCID: PMC1140467 In This Issue Proc Natl Acad Sci U S A. 2005 May 24; 102(21): 7403–7404. doi: 10.1073/iti2105102.PMCID: PMC1140468 Commentaries Vesicle reuse revisited David Zenisek PMCID: PMC1140460 The stressed gut: Contributions of intestinal stress peptides to inflammation and motility Nigel W. Bunnett PMCID: PMC1140465 Perspective The rise of the ants: A phylogenetic and ecological explanation Edward O. Wilson and Bert Hölldobler PMCID: PMC1140440 Biography INAUGURAL ARTICLE by a Recently Elected Academy Member: Biography of Douglas T. Fearon Regina Nuzzo PMCID: PMC1140442 Physical Sciences Applied Mathematics Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps R. R. Coifman, S. Lafon, A. B. Lee, M. Maggioni, B. Nadler, F. Warner, and S. W. Zucker PMCID: PMC1140422 Geometric diffusions as a tool for harmonic analysis and structure definition of data: Multiscale methods R. R. Coifman, S. Lafon, A. B. Lee, M. Maggioni, B. Nadler, F. Warner, and S. W. Zucker PMCID: PMC1140426 Applied Physical Sciences Liquid-crystal imaging of molecular-tilt ordering in self-assembled lipid tubules Yue Zhao, Nidhi Mahajan, Ruibo Lu, and Jiyu Fang PMCID: PMC1140413 Chemistry Dissecting coherent vibrational spectra of small proteins into secondary structural elements by sensitivity analysis Wei Zhuang, Darius Abramavicius, and Shaul Mukamel PMCID: PMC1140409 The importance of weak absorption features in promoting tropospheric radical production Jamie Matthews, Amitabha Sinha, and Joseph S. Francisco PMCID: PMC1103708 Cross-reactivity and conformational multiplicity of an anti-polycyclic aromatic hydrocarbon mAb Nenad M. Grubor, John Hayes, Gerald J. Small, and Ryszard Jankowiak PMCID: PMC1140447 Metal ion-binding properties of (N3)-deprotonated uridine, thymidine, and related pyrimidine nucleosides in aqueous solution Bernd Knobloch, Wolfgang Linert, and Helmut Sigel PMCID: PMC1140430 Environmental Sciences From the Cover:
Human-modified temperatures induce species changes: Joint attribution Terry L. Root, Dena P MacMynowski, Michael D. Mastrandrea, and Stephen H. Schneider PMCID: PMC1129055 Geophysics The importance of weak absorption features in promoting tropospheric radical production Jamie Matthews, Amitabha Sinha, and Joseph S. Francisco PMCID: PMC1103708 Biological Sciences Agricultural Sciences Impact of an ectoparasite on the immunity and pathology of an invertebrate: Evidence for host immunosuppression and viral amplification Xiaolong Yang and Diana L. Cox-Foster PMCID: PMC1140434 Anthropology Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations Grant Hamilton, Mark Stoneking, and Laurent Excoffier PMCID: PMC1140411 Biochemistry The candidate tumor suppressor ING4 represses activation of the hypoxia inducible factor (HIF) Abdullah Ozer, Leeju C. Wu, and Richard K. Bruick PMCID: PMC1140452 Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain Kotaro Nakanishi, Shuya Fukai, Yoshiho Ikeuchi, Akiko Soma, Yasuhiko Sekine, Tsutomu Suzuki, and Osamu Nureki PMCID: PMC1140429 Three-dimensional structure of a halotolerant algal carbonic anhydrase predicts halotolerance of a mammalian homolog Lakshmanane Premkumar, Harry M. Greenblatt, Umesh K. Bageshwar, Tatyana Savchenko, Irena Gokhman, Joel L. Sussman, and Ada Zamir PMCID: PMC1111892 CD147 is a regulatory subunit of the γ-secretase complex in Alzheimer's disease amyloid β-peptide production Shuxia Zhou, Hua Zhou, Peter J. Walian, and Bing K. Jap PMCID: PMC1103709 The crystal structures of human steroidogenic factor-1 and liver receptor homologue-1 Weiru Wang, Chao Zhang, Adhirai Marimuthu, Heike I. Krupka, Maryam Tabrizizad, Rafe Shelloe, Upasana Mehra, Kevin Eng, Hoa Nguyen, Calvin Settachatgul, Ben Powell, Michael V. Milburn, and Brian L. West PMCID: PMC1140416 Dimeric SecA is essential for protein translocation Lucia B. Jilaveanu, Christopher R. Zito, and Donald Oliver PMCID: PMC1140455 Biophysics High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein Thang K. Chiu, Jan Kubelka, Regine Herbst-Irmer, William A. Eaton, James Hofrichter, and David R. Davies PMCID: PMC1140446 Quantitating intracellular transport of polyplexes by spatio-temporal image correlation spectroscopy Rajan P. Kulkarni, David D. Wu, Mark E. Davis, and Scott E. Fraser PMCID: PMC1140437 From the Cover:
Dissociation of an antiviral compound from the internal pocket of human rhinovirus 14 capsid Yumin Li, Zhigang Zhou, and Carol Beth Post PMCID: PMC1140408 Prion and water: Tight and dynamical hydration sites have a key role in structural stability Alfonso De Simone, Guy G. Dodson, Chandra S. Verma, Adriana Zagari, and Franca Fraternali PMCID: PMC1140432 A prokaryotic superoxide dismutase paralog lacking two Cu ligands: From largely unstructured in solution to ordered in the crystal Lucia Banci, Ivano Bertini, Vito Calderone, Fiorenza Cramaro, Rebecca Del Conte, Adele Fantoni, Stefano Mangani, Alessandro Quattrone, and Maria Silvia Viezzoli PMCID: PMC1140445 Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: Assessment in two blind tests S. Ołdziej, C. Czaplewski, A. Liwo, M. Chinchio, M. Nanias, J. A. Vila, M. Khalili, Y. A. Arnautova, A. Jagielska, M. Makowski, H. D. Schafroth, R. Kaźmierkiewicz, D. R. Ripoll, J. Pillardy, J. A. Saunders, Y. K. Kang, K. D. Gibson, and H. A. Scheraga PMCID: PMC1140449 A CACNA1F mutation identified in an X-linked retinal disorder shifts the voltage dependence of Cav1.4 channel activation Ariana Hemara-Wahanui, Stanislav Berjukow, Carolyn I. Hope, Peter K. Dearden, Shu-Biao Wu, Jane Wilson-Wheeler, Dianne M. Sharp, Patricia Lundon-Treweek, Gillian M. Clover, Jean-Charles Hoda, Jörg Striessnig, Rainer Marksteiner, Steffen Hering, and Marion A. Maw PMCID: PMC1140436 On the orientation of the backbone dipoles in native folds Daniel R. Ripoll, Jorge A. Vila, and Harold A. Scheraga PMCID: PMC1140453 Cell Biology CDX1 is an important molecular mediator of Barrett's metaplasia N. A. C. S. Wong, J. Wilding, S. Bartlett, Y. Liu, B. F. Warren, J. Piris, N. Maynard, R. Marshall, and W. F. Bodmer PMCID: PMC1140438 Components of the REST/CoREST/histone deacetylase repressor complex are disrupted, modified, and translocated in HSV-1-infected cells Haidong Gu, Yu Liang, Gail Mandel, and Bernard Roizman PMCID: PMC1140450 The frequencies of calcium oscillations are optimized for efficient calcium-mediated activation of Ras and the ERK/MAPK cascade Sabine Kupzig, Simon A. Walker, and Peter J. Cullen PMCID: PMC1103707 Targeting quantum dots to surface proteins in living cells with biotin ligase Mark Howarth, Keizo Takao, Yasunori Hayashi, and Alice Y. Ting PMCID: PMC1129026 VEGF–integrin interplay controls tumor growth and vascularization Sarmishtha De, Olga Razorenova, Noel Patrick McCabe, Timothy O'Toole, Jun Qin, and Tatiana V. Byzova PMCID: PMC1129024 Diacylglycerol kinase ι regulates Ras guanyl-releasing protein 3 and inhibits Rap1 signaling Debra S. Regier, Jared Higbee, Katrina M. Lund, Fumio Sakane, Stephen M. Prescott, and Matthew K. Topham PMCID: PMC1140424 Subsecond reorganization of the actin network in cell motility and chemotaxis Stefan Diez, Günther Gerisch, Kurt Anderson, Annette Müller-Taubenberger, and Till Bretschneider PMCID: PMC1140407 Developmental Biology Peptide signaling during terminal differentiation of Dictyostelium Christophe Anjard and William F. Loomis PMCID: PMC1140433 Environmental Sciences Human modification of global water vapor flows from the land surface Line J. Gordon, Will Steffen, Bror F. Jönsson, Carl Folke, Malin Falkenmark, and Åse Johannessen PMCID: PMC1140421 Evolution Male genital size reflects a tradeoff between attracting mates and avoiding predators in two live-bearing fish species R. Brian Langerhans, Craig A. Layman, and Thomas J. DeWitt PMCID: PMC1140428 Virulence and competitive ability in genetically diverse malaria infections Jacobus C. de Roode, Riccardo Pansini, Sandra J. Cheesman, Michelle E. H. Helinski, Silvie Huijben, Andrew R. Wargo, Andrew S. Bell, Brian H. K. Chan, David Walliker, and Andrew F. Read PMCID: PMC1140419 Genetics An N-ethyl-N-nitrosourea screen for genes involved in variegation in the mouse Marnie E. Blewitt, Nicola K. Vickaryous, Sarah J. Hemley, Alyson Ashe, Timothy J. Bruxner, Jost I. Preis, Ruth Arkell, and Emma Whitelaw PMCID: PMC1140414 From the Cover:
Stable X chromosome inactivation involves the PRC1 Polycomb complex and requires histone MACROH2A1 and the CULLIN3/SPOP ubiquitin E3 ligase Inmaculada Hernández-Muñoz, Anders H. Lund, Petra van der Stoop, Erwin Boutsma, Inhua Muijrers, Els Verhoeven, Dmitri A. Nusinow, Barbara Panning, York Marahrens, and Maarten van Lohuizen PMCID: PMC1140410 Immunology INAUGURAL ARTICLE by a Recently Elected Academy Member: BCL6b mediates the enhanced magnitude of the secondary response of memory CD8 + T lymphocytes Peter M. Manders, Patricia J. Hunter, Aino I. Telaranta, James M. Carr, Jennifer L. Marshall, Marlene Carrasco, Yusuke Murakami, Michael J. Palmowski, Vincenzo Cerundolo, Susan M. Kaech, Rafi Ahmed, and Douglas T. Fearon PMCID: PMC1140431 The activating NKG2D receptor assembles in the membrane with two signaling dimers into a hexameric structure David Garrity, Matthew E. Call, Jianwen Feng, and Kai W. Wucherpfennig PMCID: PMC1140444 Medical Sciences From the Cover:
Role of peripheral corticotropin-releasing factor and urocortin II in intestinal inflammation and motility in terminal ileum Susanne E. la Fleur, Elizabeth C. Wick, Prema S. Idumalla, Eileen F. Grady, and Aditi Bhargava PMCID: PMC1140406 Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia Pei-Zheng Zheng, Kan-Kan Wang, Qun-Ye Zhang, Qiu-Hua Huang, Yan-Zhi Du, Qing-Hua Zhang, Da-Kai Xiao, Shu-Hong Shen, Sandrine Imbeaud, Eric Eveno, Chun-Jun Zhao, Yu-Long Chen, Hui-Yong Fan, Samuel Waxman, Charles Auffray, Gang Jin, Sai-Juan Chen, Zhu Chen, and Ji Zhang PMCID: PMC1140456 Overexpression of LMO4 induces mammary hyperplasia, promotes cell invasion, and is a predictor of poor outcome in breast cancer Eleanor Y. M. Sum, Davendra Segara, Belinda Duscio, Mary L. Bath, Andrew S. Field, Robert L. Sutherland, Geoffrey J. Lindeman, and Jane E. Visvader PMCID: PMC1140463 Irreversible inhibitors of the EGF receptor may circumvent acquired resistance to gefitinib Eunice L. Kwak, Raffaella Sordella, Daphne W. Bell, Nadia Godin-Heymann, Ross A. Okimoto, Brian W. Brannigan, Patricia L. Harris, David R. Driscoll, Panos Fidias, Thomas J. Lynch, Sridhar K. Rabindran, John P. McGinnis, Allan Wissner, Sreenath V. Sharma, Kurt J. Isselbacher, Jeffrey Settleman, and Daniel A. Haber PMCID: PMC1129023 Resolvin E1, an endogenous lipid mediator derived from omega-3 eicosapentaenoic acid, protects against 2,4,6-trinitrobenzene sulfonic acid-induced colitis Makoto Arita, Masaru Yoshida, Song Hong, Eric Tjonahen, Jonathan N. Glickman, Nicos A. Petasis, Richard S. Blumberg, and Charles N. Serhan PMCID: PMC1103706 Serum protein markers for early detection of ovarian cancer Gil Mor, Irene Visintin, Yinglei Lai, Hongyu Zhao, Peter Schwartz, Thomas Rutherford, Luo Yue, Patricia Bray-Ward, and David C. Ward PMCID: PMC1140439 Sensitive detection of human papillomavirus in cervical, head/neck, and schistosomiasis-associated bladder malignancies H. Yang, K. Yang, A. Khafagi, Y. Tang, T. E. Carey, A. W. Opipari, R. Lieberman, P. A. Oeth, W. Lancaster, H. P. Klinger, A. O. Kaseb, A. Metwally, H. Khaled, and D. M. Kurnit PMCID: PMC1140403 Sumoylation induced by the Arf tumor suppressor: A p53-independent function Kenji Tago, Susanna Chiocca, and Charles J. Sherr PMCID: PMC1129025 Microbiology Regulatory on/off minimization of metabolic flux changes after genetic perturbations Tomer Shlomi, Omer Berkman, and Eytan Ruppin PMCID: PMC1140402 The two-component signal transduction system RR06/HK06 regulates expression of cbpA in Streptococcus pneumoniae Alistair J. Standish, Uwe H. Stroeher, and James C. Paton PMCID: PMC1140415 Neuroscience The Poggendorff illusion explained by natural scene geometry Catherine Q. Howe, Zhiyong Yang, and Dale Purves PMCID: PMC1093311 A direct intracranial record of emotions evoked by subliminal words Lionel Naccache, Raphaël Gaillard, Claude Adam, Dominique Hasboun, Stéphane Clémenceau, Michel Baulac, Stanislas Dehaene, and Laurent Cohen PMCID: PMC1140423 Inhibition of amyloid precursor protein processing by β-secretase through site-directed antibodies Michal Arbel, Iftach Yacoby, and Beka Solomon PMCID: PMC1140443 From the Cover:
Odor maps in the olfactory cortex Zhihua Zou, Fusheng Li, and Linda B. Buck PMCID: PMC1138263 Sexually dimorphic expression of trkB, a Z-linked gene, in early posthatch zebra finch brain Xuqi Chen, Robert J. Agate, Yuichiro Itoh, and Arthur P. Arnold PMCID: PMC1140405 Pharmacology Inhibition of protein kinase CK2 prevents the progression of glomerulonephritis Masateru Yamada, Susumu Katsuma, Tetsuya Adachi, Akira Hirasawa, Satoshi Shiojima, Tadashi Kadowaki, Yasushi Okuno, Taka-aki Koshimizu, Shigeo Fujii, Yumiko Sekiya, Yohei Miyamoto, Mitsutaka Tamura, Wako Yumura, Hiroshi Nihei, Makio Kobayashi, and Gozoh Tsujimoto PMCID: PMC1140418 Physiology Demasking biological oscillators: Properties and principles of entrainment exemplified by the Neurospora circadian clock Till Roenneberg, Zdravko Dragovic, and Martha Merrow PMCID: PMC1140435 Plant Biology A single amino acid converts a repressor to an activator of flowering Yoshie Hanzawa, Tracy Money, and Desmond Bradley PMCID: PMC1140427 The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth Hilde Nelissen, Delphine Fleury, Leonardo Bruno, Pedro Robles, Lieven De Veylder, Jan Traas, José Luis Micol, Marc Van Montagu, Dirk Inzé, and Mieke Van Lijsebettens PMCID: PMC1140448 The Arabidopsis SUMO E3 ligase SIZ1 controls phosphate deficiency responses Kenji Miura, Ana Rus, Altanbadralt Sharkhuu, Shuji Yokoi, Athikkattuvalasu S. Karthikeyan, Kashchandra G. Raghothama, Dongwon Baek, Yoon Duck Koo, Jing Bo Jin, Ray A. Bressan, Dae-Jin Yun, and Paul M. Hasegawa PMCID: PMC1140425 An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm Miles R. Armstrong, Stephen C. Whisson, Leighton Pritchard, Jorunn I. B. Bos, Eduard Venter, Anna O. Avrova, Anne P. Rehmany, Ulrike Böhme, Karen Brooks, Inna Cherevach, Nancy Hamlin, Brian White, Audrey Fraser, Angela Lord, Michael A. Quail, Carol Churcher, Neil Hall, Matthew Berriman, Sanwen Huang, Sophien Kamoun, Jim L. Beynon, and Paul R. J. Birch PMCID: PMC1140420 Social Sciences Social Sciences Using fingerprint image quality to improve the identification performance of the U.S. Visitor and Immigrant Status Indicator Technology Program Lawrence M. Wein and Manas Baveja PMCID: PMC1111891 |
