| | Articles Growth-regulated expression and G0-specific turnover of the mRNA that encodes URH49, a mammalian DExH/D box protein that is highly related to the mRNA export protein UAP56 Anne Pryor, Luh Tung, Zhe Yang, Fehmida Kapadia, Tien-Hsien Chang, and Lee F. Johnson PMCID: PMC390356 Distinct requirements for Ku in N nucleotide addition at V(D)J- and non-V(D)J-generated double-strand breaks Zoltan Sandor, Monica L. Calicchio, R. Geoffrey Sargent, David B. Roth, and John H. Wilson PMCID: PMC390357 Transcription factor decoy oligonucleotides modified with locked nucleic acids: an in vitro study to reconcile biostability with binding affinity Rita Crinelli, Marzia Bianchi, Lucia Gentilini, Linda Palma, Mads D. Sørensen, Torsten Bryld, Ravindra B. Babu, Khalil Arar, Jesper Wengel, and Mauro Magnani PMCID: PMC390358 Structural and functional analysis of Mre11-3 L. Matthew Arthur, Karin Gustausson, Karl-Peter Hopfner, Christian T. Carson, Travis H. Stracker, Annette Karcher, Diana Felton, Matthew D. Weitzman, John Tainer, and James P. Carney PMCID: PMC390353 Human replication protein A (RPA) binds a primer–template junction in the absence of its major ssDNA-binding domains Pavel E. Pestryakov, Denis Y. Khlimankov, Elena Bochkareva, Alexey Bochkarev, and Olga I. Lavrik PMCID: PMC390355 Characterization of a novel RNA polymerase II arrest site which lacks a weak 3′ RNA–DNA hybrid Peter J. Hawryluk, Andrea Újvári, and Donal S. Luse PMCID: PMC390359 Humanized telomeres and an attempt to express a functional human telomerase in yeast Amadou Bah, François Bachand, Éveline Clair, Chantal Autexier, and Raymund J. Wellinger PMCID: PMC390362 Covalently attached oligodeoxyribonucleotides induce RNase activity of a short peptide and modulate its base specificity Nadezhda L. Mironova, Dmytryi V. Pyshnyi, Eugenya M. Ivanova, Marina A. Zenkova, Hans J. Gross, and Valentin V. Vlassov PMCID: PMC390365 A third base pair for the polymerase chain reaction: inserting isoC and isoG Scott C. Johnson, Christopher B. Sherrill, David J. Marshall, Michael J. Moser, and James R. Prudent PMCID: PMC390373 Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition Eric J. Perkins, Barbara L. Kee, and Dale A. Ramsden PMCID: PMC390374 Identifying transcriptional regulatory sites in the human genome using an integrated system Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, and Shir-Ly Huang PMCID: PMC390354 Multiple domains of the Receptor-Interacting Protein 140 contribute to transcription inhibition Audrey Castet, Abdelhay Boulahtouf, Gwennaëlle Versini, Sandrine Bonnet, Patrick Augereau, Françoise Vignon, Saadi Khochbin, Stéphan Jalaguier, and Vincent Cavaillès PMCID: PMC390375 Selective inhibition of the DNA-dependent protein kinase (DNA-PK) by the radiosensitizing agent caffeine Wesley D. Block, Dennis Merkle, Katheryn Meek, and Susan P. Lees-Miller PMCID: PMC390360 Transcriptional organization of the Clostridium acetobutylicum genome Carlos J. Paredes, Isidore Rigoutsos, and E. Terry Papoutsakis PMCID: PMC390361 Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy Joongbaek Kim, Shige H. Yoshimura, Kohji Hizume, Ryosuke L. Ohniwa, Akira Ishihama, and Kunio Takeyasu PMCID: PMC390363 ESF1 is required for 18S rRNA synthesis in Saccharomyces cerevisiae Wen-Tao Peng, Nevan J. Krogan, Dawn P. Richards, Jack F. Greenblatt, and Timothy R. Hughes PMCID: PMC390369 Energetic basis for selective recognition of T·G mismatched base pairs in DNA by imidazole-rich polyamides Eilyn R. Lacy, Binh Nguyen, Minh Le, Kari K. Cox, Caroline O'Hare, John A. Hartley, Moses Lee, and W. David Wilson PMCID: PMC390366 2′-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro Byong Hoon Yoo, Elena Bochkareva, Alexey Bochkarev, Tung-Chung Mou, and Donald M. Gray PMCID: PMC390367 Chemical syntheses of inhibitory substrates of the RNA–RNA ligation reaction catalyzed by the hairpin ribozyme Archna P. Massey and Snorri Th. Sigurdsson PMCID: PMC390368 Structural features of the rice chromosome 4 centromere Yu Zhang, Yuchen Huang, Lei Zhang, Ying Li, Tingting Lu, Yiqi Lu, Qi Feng, Qiang Zhao, Zhukuan Cheng, Yongbiao Xue, Rod A. Wing, and Bin Han PMCID: PMC390372 Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro Jean-Leon Chong, Ray-Yuan Chuang, Luh Tung, and Tien-Hsien Chang PMCID: PMC390370 An RNA secondary structure bias for non-homologous reverse transcriptase-mediated deletions in vivo Mogens Duch, Maria L. Carrasco, Thomas Jespersen, Lars Aagaard, and Finn Skou Pedersen PMCID: PMC390364 The spread of LAGLIDADG homing endonuclease genes in rDNA Peik Haugen and Debashish Bhattacharya PMCID: PMC390371 NAR Methods Online Molecular analysis of high-copy insertion sites in maize A. Mark Settles, Susan Latshaw, and Donald R. McCarty PMCID: PMC390377 Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR Matthew P. Johnson, Larisa M. Haupt, and Lyn R. Griffiths PMCID: PMC390376 Instant evaluation of the absolute initial number of cDNA copies from a single real-time PCR curve Stéphane Swillens, Jean-Christophe Goffard, Yoann Maréchal, Alban de Kerchove d'Exaerde, and Hakim El Housni PMCID: PMC390378 Dual FRET molecular beacons for mRNA detection in living cells Philip J. Santangelo, Brent Nix, Andrew Tsourkas, and Gang Bao PMCID: PMC390379 Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells Nitin Nitin, Philip J. Santangelo, Gloria Kim, Shuming Nie, and Gang Bao PMCID: PMC390380 |
