| | Articles Repairing the Sickle Cell mutation. II. Effect of psoralen linker length on specificity of formation and yield of third strand-directed photoproducts with the mutant target sequence Olga Amosova, Steven L. Broitman, and Jacques R. Fresco PMCID: PMC169896 Repairing the Sickle Cell mutation. III. Effect of irradiation wavelength on the specificity and type of photoproduct formed by a 3′-terminal psoralen on a third strand directed to the mutant base pair Steven L. Broitman, Olga Amosova, and Jacques R. Fresco PMCID: PMC169894 Identification and analysis of ‘extended –10’ promoters in Escherichia coli Jennie E. Mitchell, Dongling Zheng, Stephen J. W. Busby, and Stephen D. Minchin PMCID: PMC169978 Rpb7 subunit of RNA polymerase II interacts with an RNA-binding protein involved in processing of transcripts Hiroshi Mitsuzawa, Emi Kanda, and Akira Ishihama PMCID: PMC169969 Insertion of the T3 DNA polymerase thioredoxin binding domain enhances the processivity and fidelity of Taq DNA polymerase John F. Davidson, Richard Fox, Dawn D. Harris, Sally Lyons-Abbott, and Lawrence A. Loeb PMCID: PMC169918 Probing the substrate specificity of Escherichia coli RNase E using a novel oligonucleotide-based assay Vladimir R. Kaberdin PMCID: PMC169975 Regulation of TCF ETS-domain transcription factors by helix–loop–helix motifs Julie Stinson, Toshiaki Inoue, Paula Yates, Anne Clancy, John D. Norton, and Andrew D. Sharrocks PMCID: PMC169972 A yeast knockout strain to discriminate between active and inactive tRNA molecules Renaud Geslain, Franck Martin, Alain Camasses, and Gilbert Eriani PMCID: PMC169964 Identifying the methyltransferases for m5U747 and m5U1939 in 23S rRNA using MALDI mass spectrometry Christian Toft Madsen, Jonas Mengel-Jørgensen, Finn Kirpekar, and Stephen Douthwaite PMCID: PMC169892 NMR study on the interaction between RPA and DNA decamer containing cis-syn cyclobutane pyrimidine dimer in the presence of XPA: implication for damage verification and strand-specific dual incision in nucleotide excision repair Joon-Hwa Lee, Chin-Ju Park, Alphonse I. Arunkumar, Walter J. Chazin, and Byong-Seok Choi PMCID: PMC169961 RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space Carlos M. Duarte, Leven M. Wadley, and Anna Marie Pyle PMCID: PMC169959 Molecular handcuffing of the relaxosome at the origin of conjugative transfer of the plasmid R1162 Xiaolin Zhang, Shuyu Zhang, and Richard J. Meyer PMCID: PMC169967 Efficient incorporation of positively charged 2′, 3′-dideoxynucleoside-5′-triphosphates by DNA polymerases and their application in ‘direct-load’ DNA sequencing Patrick J. Finn, Matthew G. Bull, Haiguang Xiao, Paula D. Phillips, John R. Nelson, Greg Grossmann, Satyam Nampalli, Bernard F. McArdle, J. Anthony Mamone, Parke K. Flick, Carl W. Fuller, and Shiv Kumar PMCID: PMC169923 Cell cycle arrest and apoptosis provoked by UV radiation-induced DNA damage are transcriptionally highly divergent responses Massimiliano Gentile, Leena Latonen, and Marikki Laiho PMCID: PMC169943 Two protein–protein interaction sites on the spliceosome-associated human cyclophilin CypH Dierk Ingelfinger, Sven F. Göthel, Mohamed A. Marahiel, Ulrich Reidt, Ralf Ficner, Reinhard Lührmann, and Tilmann Achsel PMCID: PMC169899 Methylation of CpG dinucleotides in the open reading frame of a testicular germ cell-specific intronless gene, Tact1/Actl7b, represses its expression in somatic cells Mizue Hisano, Hiroshi Ohta, Yoshitake Nishimune, and Masami Nozaki PMCID: PMC169926 Apoptin protein multimers form distinct higher-order nucleoprotein complexes with DNA Sirik R. Leliveld, Remus T. Dame, Mieke A. Mommaas, Henk K. Koerten, Claire Wyman, Astrid A. A. M. Danen-van Oorschot, Jennifer L. Rohn, Mathieu H. M. Noteborn, and Jan Pieter Abrahams PMCID: PMC169900 Structures of Escherichia coli DNA mismatch repair enzyme MutS in complex with different mismatches: a common recognition mode for diverse substrates Ganesh Natrajan, Meindert H. Lamers, Jacqueline H. Enzlin, Herrie H. K. Winterwerp, Anastassis Perrakis, and Titia K. Sixma PMCID: PMC169951 The bacterial transposon Tn7 causes premature polyadenylation of mRNA in eukaryotic organisms: TAGKO mutagenesis in filamentous fungi Clive Lo, Kiichi Adachi, Jeffrey R. Shuster, John E. Hamer, and Lisbeth Hamer PMCID: PMC169947 Large scale study of protein domain distribution in the context of alternative splicing Shuo Liu and Russ B. Altman PMCID: PMC169920 Alterations in the intracellular level of a protein subunit of human RNase P affect processing of tRNA precursors Amit Cohen, Robert Reiner, and Nayef Jarrous PMCID: PMC169977 Zinc finger-dependent HIV-1 nucleocapsid protein–TAR RNA interactions Nick Lee, Robert J. Gorelick, and Karin Musier-Forsyth PMCID: PMC169955 The sequence and analysis of Trypanosoma brucei chromosome II Najib M. A. El-Sayed, Elodie Ghedin, Jinming Song, Annette MacLeod, Frederic Bringaud, Christopher Larkin, David Wanless, Jeremy Peterson, Lihua Hou, Sonya Taylor, Alison Tweedie, Nicolas Biteau, Hanif G. Khalak, Xiaoying Lin, Tanya Mason, Linda Hannick, Elisabet Caler, Gaëlle Blandin, Daniella Bartholomeu, Anjana J. Simpson, Samir Kaul, Hong Zhao, Grace Pai, Susan Van Aken, Teresa Utterback, Brian Haas, Hean L. Koo, Lowell Umayam, Bernard Suh, Caroline Gerrard, Vanessa Leech, Rong Qi, Shiguo Zhou, David Schwartz, Tamara Feldblyum, Steven Salzberg, Andrew Tait, C. Michael R. Turner, Elisabetta Ullu, Owen White, Sara Melville, Mark D. Adams, Claire M. Fraser, and John E. Donelson PMCID: PMC169936 The DNA sequence of chromosome I of an African trypanosome: gene content, chromosome organisation, recombination and polymorphism Neil Hall, Matthew Berriman, Nicola J. Lennard, Barbara R. Harris, Christiane Hertz-Fowler, Emmanuelle N. Bart-Delabesse, Caroline S. Gerrard, Rebecca J. Atkin, Andrew J. Barron, Sharen Bowman, Sarah P. Bray-Allen, Frédéric Bringaud, Louise N. Clark, Craig H. Corton, Ann Cronin, Robert Davies, Jonathon Doggett, Audrey Fraser, Eric Grüter, Sarah Hall, A. David Harper, Mike P. Kay, Vanessa Leech, Rebecca Mayes, Claire Price, Michael A. Quail, Ester Rabbinowitsch, Christopher Reitter, Kim Rutherford, Jürgen Sasse, Sarah Sharp, Ratna Shownkeen, Annette MacLeod, Sonya Taylor, Alison Tweedie, C. Michael R. Turner, Andrew Tait, Keith Gull, Bart Barrell, and Sara E. Melville PMCID: PMC169939 ADAR2 A→I editing: site selectivity and editing efficiency are separate events Annika M. Källman, Margareta Sahlin, and Marie Öhman PMCID: PMC169957 Role of cysteine amino acid residues on the RNA binding activity of human thymidylate synthase Xiukun Lin, Jun Liu, Frank Maley, and Edward Chu PMCID: PMC169953 Biochemical analysis of components of the pre-replication complex of Archaeoglobus fulgidus Ian Grainge, Sarah Scaife, and Dale B. Wigley PMCID: PMC169903 Sequence–structure–function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase John Mouaikel, Janusz M. Bujnicki, Jamal Tazi, and Rémy Bordonné PMCID: PMC169889 Single nucleotide polymorphisms (SNPs) that map to gaps in the human SNP map Circe Tsui, Laura E. Coleman, Jacqulyn L. Griffith, E. Andrew Bennett, Summer G. Goodson, Jason D. Scott, W. Stephen Pittard, and Scott E. Devine PMCID: PMC169912 Cloning, functional analysis and post-transcriptional regulation of a type II DNA topoisomerase from Leishmania infantum. A new potential target for anti-parasite drugs Tobias Hanke, María J. Ramiro, Sonia Trigueros, Joaquim Roca, and Vicente Larraga PMCID: PMC169929 An important role for RUNX3 in human L1 transcription and retrotransposition Nuo Yang, Lin Zhang, Yue Zhang, and Haig H. Kazazian Jr PMCID: PMC169909 Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC′ redefines the substrate-binding site and suggests a model for protein–RNA interactions Gordana Maravić, Janusz M. Bujnicki, Marcin Feder, Sándor Pongor, and Mirna Flögel PMCID: PMC169915 Characterisation of the substrate specificity of homogeneous vaccinia virus uracil-DNA glycosylase Natale Scaramozzino, Guenhael Sanz, Jean Marc Crance, Murat Saparbaev, Robert Drillien, Jacques Laval, Bodil Kavli, and Daniel Garin PMCID: PMC169932 NAR Methods Online Impact of surface chemistry and blocking strategies on DNA microarrays Scott Taylor, Stephanie Smith, Brad Windle, and Anthony Guiseppi-Elie PMCID: PMC169979 Dendrimeric coating of glass slides for sensitive DNA microarrays analysis Véronique Le Berre, Emmanuelle Trévisiol, Adilia Dagkessamanskaia, Serguei Sokol, Anne-Marie Caminade, Jean Pierre Majoral, Bernard Meunier, and Jean François PMCID: PMC169980 Gene expression analysis using single molecule detection Kerstin Korn, Paola Gardellin, Bohao Liao, Mario Amacker, Åsa Bergström, Henrik Björkman, Agnès Camacho, Sabine Dörhöfer, Klaus Dörre, Johanna Enström, Thomas Ericson, Tatiana Favez, Michael Gösch, Adrian Honegger, Sandra Jaccoud, Markus Lapczyna, Erik Litborn, Per Thyberg, Holger Winter, and Rudolf Rigler PMCID: PMC169981 Combination of DNA-directed immobilization and immuno-PCR: very sensitive antigen detection by means of self-assembled DNA–protein conjugates Christof M. Niemeyer, Ron Wacker, and Michael Adler PMCID: PMC169982 Method to protect a targeted amino acid residue during random mutagenesis Daisuke Umeno, Kaori Hiraga, and Frances H. Arnold PMCID: PMC169983 Detection of methylation of human p16Ink4a gene 5′-CpG islands by electrochemical method coupled with linker-PCR Peng Hou, Meiju Ji, Cunwang Ge, Jiayao Shen, Song Li, Nongyue He, and Zuhong Lu PMCID: PMC169984 Mathematics of quantitative kinetic PCR and the application of standard curves R. G. Rutledge and C. Côté PMCID: PMC169985 A sensitive transcriptome analysis method that can detect unknown transcripts Ryutaro Fukumura, Hirokazu Takahashi, Toshiyuki Saito, Yoko Tsutsumi, Akira Fujimori, Shinji Sato, Kouichi Tatsumi, Ryoko Araki, and Masumi Abe PMCID: PMC169986 Restriction site tagged (RST) microarrays: a novel technique to study the species composition of complex microbial systems Eugene R. Zabarovsky, Lev Petrenko, Alexei Protopopov, Olga Vorontsova, Alexey S. Kutsenko, Yanyan Zhao, Gelena Kilosanidze, Veronika Zabarovska, Elian Rakhmanaliev, Bertil Pettersson, Vladimir I. Kashuba, Olle Ljungqvist, Elisabeth Norin, Tore Midtvedt, Roland Möllby, Gösta Winberg, and Ingemar Ernberg PMCID: PMC169987 A model-based analysis of microarray experimental error and normalisation Yongxiang Fang, Andrew Brass, David C. Hoyle, Andrew Hayes, Abdulla Bashein, Stephen G. Oliver, David Waddington, and Magnus Rattray PMCID: PMC169988 Ligation of high-melting-temperature ‘clamp’ sequence extends the scanning range of rare point-mutational analysis by constant denaturant capillary electrophoresis (CDCE) to most of the human genome Andrea S. Kim and William G. Thilly PMCID: PMC169989 A chemical enucleation method for the transfer of mitochondrial DNA to ρ° cells Maria Pilar Bayona-Bafaluy, Giovanni Manfredi, and Carlos T. Moraes PMCID: PMC169990 Regionalized GC content of template DNA as a predictor of PCR success Yair Benita, Ronald S. Oosting, Martin C. Lok, Michael J. Wise, and Ian Humphery-Smith PMCID: PMC169991 |
