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Volume 25(1);  January 1, 1997
Research Articles
GenBank.
D A Benson, M S Boguski, D J Lipman, and J Ostell
Nucleic Acids Res. 1997 January 1; 25(1): 1–6.
PMCID: PMC146400
The EMBL Nucleotide Sequence Database.
G Stoesser, P Sterk, M A Tuli, P J Stoehr, and G N Cameron
Nucleic Acids Res. 1997 January 1; 25(1): 7–14.
PMCID: PMC146376
DNA Data Bank of Japan in the age of information biology.
Y Tateno and T Gojobori
Nucleic Acids Res. 1997 January 1; 25(1): 14–17.
PMCID: PMC146410
The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes.
C Harger, M Skupski, E Allen, C Clark, D Crowley, E Dickinson, D Easley, A Espinosa-Lujan, A Farmer, C Fields, L Flores, L Harris, G Keen, M Manning, M McLeod, J O'Neill, M Pumilia, R Reinert, D Rider, J Rohrlich, Y Romero, J Schwertfeger, G Seluja, A Siepel, P A Schad, et al.
Nucleic Acids Res. 1997 January 1; 25(1): 18–23.
PMCID: PMC146367
| Abstract |
The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database.
D G George, R J Dodson, J S Garavelli, D H Haft, L T Hunt, C R Marzec, B C Orcutt, K E Sidman, G Y Srinivasarao, L S Yeh, L M Arminski, R S Ledley, A Tsugita, and W C Barker
Nucleic Acids Res. 1997 January 1; 25(1): 24–28.
PMCID: PMC146415
MIPS: a database for protein sequences, homology data and yeast genome information.
H W Mewes, K Albermann, K Heumann, S Liebl, and F Pfeiffer
Nucleic Acids Res. 1997 January 1; 25(1): 28–30.
PMCID: PMC146421
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
A Bairoch and R Apweiler
Nucleic Acids Res. 1997 January 1; 25(1): 31–36.
PMCID: PMC146382
The metabolic pathway collection: an update.
E Selkov, M Galimova, I Goryanin, Y Gretchkin, N Ivanova, Y Komarov, N Maltsev, N Mikhailova, V Nenashev, R Overbeek, E Panyushkina, L Pronevitch, and E Selkov, Jr
Nucleic Acids Res. 1997 January 1; 25(1): 37–38.
PMCID: PMC146375
Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC (update 1996).
M Kröger and R Wahl
Nucleic Acids Res. 1997 January 1; 25(1): 39–42.
PMCID: PMC146385
EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.
P D Karp, M Riley, S M Paley, A Pellegrini-Toole, and M Krummenacker
Nucleic Acids Res. 1997 January 1; 25(1): 43–51.
PMCID: PMC146379
Genes and proteins of Escherichia coli K-12 (GenProtEC).
M Riley
Nucleic Acids Res. 1997 January 1; 25(1): 51–52.
PMCID: PMC146413
The NRSub database: update 1997.
G Perrière, I Moszer, and T Gojobori
Nucleic Acids Res. 1997 January 1; 25(1): 53–56.
PMCID: PMC146364
Yeast Protein database (YPD): a database for the complete proteome of Saccharomyces cerevisiae.
W E Payne and J I Garrels
Nucleic Acids Res. 1997 January 1; 25(1): 57–62.
PMCID: PMC146399
FlyBase: a Drosophila database. The FlyBase consortium.
W M Gelbart, M Crosby, B Matthews, W P Rindone, J Chillemi, S Russo Twombly, D Emmert, M Ashburner, R A Drysdale, E Whitfield, G H Millburn, A de Grey, T Kaufman, K Matthews, D Gilbert, V Strelets, and C Tolstoshev
Nucleic Acids Res. 1997 January 1; 25(1): 63–66.
PMCID: PMC146418
GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development.
B Jacq, F Horn, F Janody, N Gompel, O Serralbo, E Mohr, C Leroy, B Bellon, L Fasano, P Laurenti, and L Röder
Nucleic Acids Res. 1997 January 1; 25(1): 67–71.
PMCID: PMC146365
The GDB Human Genome Database Anno 1997.
K H Fasman, S I Letovsky, P Li, R W Cottingham, and D T Kingsbury
Nucleic Acids Res. 1997 January 1; 25(1): 72–81.
PMCID: PMC146370
The Radiation Hybrid Database.
P Rodriguez-Tomé and P Lijnzaad
Nucleic Acids Res. 1997 January 1; 25(1): 81–84.
PMCID: PMC146391
The Mouse Genome Database (MGD). A comprehensive public resource of genetic, phenotypic and genomic data. The Mouse Genome Informatics Group.
J A Blake, J E Richardson, M T Davisson, and J T Eppig
Nucleic Acids Res. 1997 January 1; 25(1): 85–91.
PMCID: PMC146406
| Abstract |
Molecular Probe Data Base (MPDB).
M G Campi, M Castoldi, P Romano, E Thüroff, M A Manniello, B Iannotta, G Rondanina, T Ruzzon, and L Santi
Nucleic Acids Res. 1997 January 1; 25(1): 92–95.
PMCID: PMC146387
Compilation of 5S rRNA and 5S rRNA gene sequences.
T Specht, M Szymanski, M Z Barciszewska, J Barciszewski, and V A Erdmann
Nucleic Acids Res. 1997 January 1; 25(1): 96–97.
PMCID: PMC146404
Small RNA database.
J Gu and R Reddy
Nucleic Acids Res. 1997 January 1; 25(1): 98–102.
PMCID: PMC146407
The uRNA database.
C Zwieb
Nucleic Acids Res. 1997 January 1; 25(1): 102–103.
PMCID: PMC146409
The guide RNA database.
A E Souza, T Hermann, and H U Göringer
Nucleic Acids Res. 1997 January 1; 25(1): 104–106.
PMCID: PMC146412
The Signal Recognition Particle Database (SRPDB).
C Zwieb and N Larsen
Nucleic Acids Res. 1997 January 1; 25(1): 107–108.
PMCID: PMC146417
The RDP (Ribosomal Database Project).
B L Maidak, G J Olsen, N Larsen, R Overbeek, M J McCaughey, and C R Woese
Nucleic Acids Res. 1997 January 1; 25(1): 109–111.
PMCID: PMC146422
Database on the structure of small ribosomal subunit RNA.
Y Van de Peer, J Jansen, P De Rijk, and R De Wachter
Nucleic Acids Res. 1997 January 1; 25(1): 111–116.
PMCID: PMC146374
Database on the structure of large ribosomal subunit RNA.
P De Rijk, Y Van de Peer, and R De Wachter
Nucleic Acids Res. 1997 January 1; 25(1): 117–122.
PMCID: PMC146373
Update of the viroid and viroid-like sequence database: addition of a hepatitis delta virus RNA section.
D Lafontaine, S Mercure, and J P Perreault
Nucleic Acids Res. 1997 January 1; 25(1): 123–125.
PMCID: PMC146369
The RNA modification database.
P F Crain and J A McCloskey
Nucleic Acids Res. 1997 January 1; 25(1): 126–127.
PMCID: PMC146386
The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0).
G Kemball-Cook and E G Tuddenham
Nucleic Acids Res. 1997 January 1; 25(1): 128–132.
PMCID: PMC146401
Haemophilia B: database of point mutations and short additions and deletions, 7th edition.
F Giannelli, P M Green, S S Sommer, M C Poon, M Ludwig, R Schwaab, P H Reitsma, M Goossens, A Yoshioka, M S Figueiredo, and G G Brownlee
Nucleic Acids Res. 1997 January 1; 25(1): 133–135.
PMCID: PMC146360
Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and both the lacI and lacZ gene in transgenic rodents.
N F Cariello, G R Douglas, M J Dycaico, N J Gorelick, G S Provost, and T Soussi
Nucleic Acids Res. 1997 January 1; 25(1): 136–137.
PMCID: PMC146381
p53 and APC gene mutations: software and databases.
C Béroud and T Soussi
Nucleic Acids Res. 1997 January 1; 25(1): 138.
PMCID: PMC146392
The PAH mutation analysis consortium database: update 1996.
P Nowacki, S Byck, L Prevost, and C R Scriver
Nucleic Acids Res. 1997 January 1; 25(1): 139–142.
PMCID: PMC146402
The alpha/beta fold family of proteins database and the cholinesterase gene server ESTHER.
X Cousin, T Hotelier, K Giles, P Lievin, J P Toutant, and A Chatonnet
Nucleic Acids Res. 1997 January 1; 25(1): 143–146.
PMCID: PMC146416
Marfan Database (second edition): software and database for the analysis of mutations in the human FBN1 gene.
G Collod-Béroud, C Béroud, L Adès, C Black, M Boxer, D J Brock, M Godfrey, C Hayward, L Karttunen, D Milewicz, L Peltonen, R I Richards, M Wang, C Junien, and C Boileau
Nucleic Acids Res. 1997 January 1; 25(1): 147–150.
PMCID: PMC146361
Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects.
P Hainaut, T Soussi, B Shomer, M Hollstein, M Greenblatt, E Hovig, C C Harris, and R Montesano
Nucleic Acids Res. 1997 January 1; 25(1): 151–157.
PMCID: PMC146396
The androgen receptor gene mutations database.
B Gottlieb, M Trifiro, R Lumbroso, and L Pinsky
Nucleic Acids Res. 1997 January 1; 25(1): 158–162.
PMCID: PMC146393
| Abstract |
The Nuclear Receptor Resource Project.
E Martinez, D D Moore, E Keller, D Pearce, V Robinson, P N MacDonald, S S Simons, Jr, E Sanchez, and M Danielsen
Nucleic Acids Res. 1997 January 1; 25(1): 163–165.
PMCID: PMC146394
BTKbase, mutation database for X-linked agammaglobulinemia (XLA)
M Vihinen, B H Belohradsky, R N Haire, E Holinski-Feder, S P Kwan, I Lappalainen, H Lehväslaiho, T Lester, A Meindl, H D Ochs, J Ollila, I Vorechovsky, M Weiss, and C I Smith
Nucleic Acids Res. 1997 January 1; 25(1): 166–171.
PMCID: PMC146405
Software and database for the analysis of mutations in the human LDL receptor gene.
M Varret, J P Rabès, G Collod-Béroud, C Junien, C Boileau, and C Béroud
Nucleic Acids Res. 1997 January 1; 25(1): 172–180.
PMCID: PMC146377
The human type I collagen mutation database.
R Dalgleish
Nucleic Acids Res. 1997 January 1; 25(1): 181–187.
PMCID: PMC146420
Expansion of the 16S and 23S ribosomal RNA mutation databases (16SMDB and 23SMDB).
K L Triman and B J Adams
Nucleic Acids Res. 1997 January 1; 25(1): 188–191.
PMCID: PMC146368
A mutation spectra database for bacterial and mammalian genes.
F Hutchinson and J E Donnellan, Jr
Nucleic Acids Res. 1997 January 1; 25(1): 192–195.
PMCID: PMC146388
MITOMAP: an update on the status of the human mitochondrial genome database.
A M Kogelnik, M T Lott, M D Brown, S B Navathe, and D C Wallace
Nucleic Acids Res. 1997 January 1; 25(1): 196–199.
PMCID: PMC146395
MmtDB: a Metazoa mitochondrial DNA variants database.
D Calò, A De Pascali, D Sasanelli, F Tanzariello, M Tommaseo Ponzetta, C Saccone, and M Attimonelli
Nucleic Acids Res. 1997 January 1; 25(1): 200–205.
PMCID: PMC146362
IMGT, the international ImMunoGeneTics database.
V Giudicelli, D Chaume, J Bodmer, W Müller, C Busin, S Marsh, R Bontrop, L Marc, A Malik, and M P Lefranc
Nucleic Acids Res. 1997 January 1; 25(1): 206–211.
PMCID: PMC146384
Novel developments with the PRINTS protein fingerprint database.
T K Attwood, M E Beck, A J Bleasby, K Degtyarenko, A D Michie, and D J Parry-Smith
Nucleic Acids Res. 1997 January 1; 25(1): 212–217.
PMCID: PMC146411
The PROSITE database, its status in 1997.
A Bairoch, P Bucher, and K Hofmann
Nucleic Acids Res. 1997 January 1; 25(1): 217–221.
PMCID: PMC146371
Recent enhancements to the Blocks Database servers.
J G Henikoff, S Pietrokovski, and S Henikoff
Nucleic Acids Res. 1997 January 1; 25(1): 222–225.
PMCID: PMC146414
The HSSP database of protein structure-sequence alignments.
R Schneider, A de Daruvar, and C Sander
Nucleic Acids Res. 1997 January 1; 25(1): 226–230.
PMCID: PMC146419
Dali/FSSP classification of three-dimensional protein folds.
L Holm and C Sander
Nucleic Acids Res. 1997 January 1; 25(1): 231–234.
PMCID: PMC146389
An update of the DEF database of protein fold class predictions.
M Reczko, D Karras, and H Bohr
Nucleic Acids Res. 1997 January 1; 25(1): 235.
PMCID: PMC146378
SCOP: a structural classification of proteins database.
T J Hubbard, A G Murzin, S E Brenner, and C Chothia
Nucleic Acids Res. 1997 January 1; 25(1): 236–239.
PMCID: PMC146380
The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments.
P Fábián, J Murvai, Z Hátsági, K Vlahovicek, H Hegyi, and S Pongor
Nucleic Acids Res. 1997 January 1; 25(1): 240–243.
PMCID: PMC146372
Codon usage tabulated from the international DNA sequence databases.
Y Nakamura, T Gojobori, and T Ikemura
Nucleic Acids Res. 1997 January 1; 25(1): 244–245.
PMCID: PMC146397
The translational signal database, TransTerm: more organisms, complete genomes.
M E Dalphin, C M Brown, P A Stockwell, and W P Tate
Nucleic Acids Res. 1997 January 1; 25(1): 246–247.
PMCID: PMC146403
REBASE-restriction enzymes and methylases.
R J Roberts and D Macelis
Nucleic Acids Res. 1997 January 1; 25(1): 248–262.
PMCID: PMC146408
The ribonuclease P database.
J W Brown
Nucleic Acids Res. 1997 January 1; 25(1): 263–264.
PMCID: PMC146423
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
E Wingender, A E Kel, O V Kel, H Karas, T Heinemeyer, P Dietze, R Knüppel, A G Romaschenko, and N A Kolchanov
Nucleic Acids Res. 1997 January 1; 25(1): 265–268.
PMCID: PMC146363
MHCPEP, a database of MHC-binding peptides: update 1996.
V Brusic, G Rudy, A P Kyne, and L C Harrison
Nucleic Acids Res. 1997 January 1; 25(1): 269–271.
PMCID: PMC146366
Histone and histone fold sequences and structures: a database.
A D Baxevanis and D Landsman
Nucleic Acids Res. 1997 January 1; 25(1): 272–273.
PMCID: PMC146383
The directory of P450-containing systems in 1996.
P Fábián and K N Degtyarenko
Nucleic Acids Res. 1997 January 1; 25(1): 274–277.
PMCID: PMC146390
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins.
J E Hansen, O Lund, K Rapacki, and S Brunak
Nucleic Acids Res. 1997 January 1; 25(1): 278–282.
PMCID: PMC146398
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