| | Articles SURVEY AND SUMMARY: The non-Watson–Crick base pairs and their associated isostericity matrices Neocles B. Leontis, Jesse Stombaugh, and Eric Westhof PMCID: PMC134247 Transcription elongation factor Spt4 mediates loss of phosphorylated RNA polymerase II transcription in response to DNA damage Lars E. T. Jansen, Ana I. Belo, Rinske Hulsker, and Jaap Brouwer PMCID: PMC134242 Transcription and nuclear transport of CAG/CTG trinucleotide repeats in yeast Emmanuelle Fabre, Bernard Dujon, and Guy-Franck Richard PMCID: PMC134249 A splicing silencer that regulates smooth muscle specific alternative splicing is active in multiple cell types Natalia Gromak and Christopher W. J. Smith PMCID: PMC134246 C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site Keiko Kita, Junko Tsuda, and Shin-ya Nakai PMCID: PMC134244 Oxidative DNA damage induced by copper and hydrogen peroxide promotes CG→TT tandem mutations at methylated CpG dinucleotides in nucleotide excision repair-deficient cells Dong-Hyun Lee, Timothy R. O’Connor, and Gerd P. Pfeifer PMCID: PMC134245 RNA molecules with structure dependent functions are uniquely folded Shu-Yun Le, Kaizhong Zhang, and Jacob V. Maizel, Jr PMCID: PMC134240 Ku heterodimer binds to both ends of the Werner protein and functional interaction occurs at the Werner N-terminus Parimal Karmakar, Carey M. Snowden, Dale A. Ramsden, and Vilhelm A. Bohr PMCID: PMC134248 Metallo-β-lactamase fold within nucleic acids processing enzymes: the β-CASP family Isabelle Callebaut, Despina Moshous, Jean-Paul Mornon, and Jean-Pierre de Villartay PMCID: PMC134238 Imprinting regulator DNMT3L is a transcriptional repressor associated with histone deacetylase activity Ulla Aapola, Ingrid Liiv, and Pärt Peterson PMCID: PMC134241 A functional gene discovery in the Fas-mediated pathway to apoptosis by analysis of transiently expressed randomized hybrid-ribozyme libraries Hiroaki Kawasaki and Kazunari Taira PMCID: PMC134243 Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies Donald Hamelberg, Loren Dean Williams, and W. David Wilson PMCID: PMC134239 The human XPC DNA repair gene: arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function Sikandar G. Khan, Vanessa Muniz-Medina, Tala Shahlavi, Carl C. Baker, Hiroki Inui, Takahiro Ueda, Steffen Emmert, Thomas D. Schneider, and Kenneth H. Kraemer PMCID: PMC134237 Subcellular trafficking of antisense oligonucleotides and down-regulation of bcl-2 gene expression in human melanoma cells using a fusogenic liposome delivery system Qiang Hu, Marcel B. Bally, and Thomas D. Madden PMCID: PMC137064 NAR Methods Online Manufacturing DNA microarrays from unpurified PCR products Frank Diehl, Boris Beckmann, Nadine Kellner, Nicole C. Hauser, Susanne Diehl, and Jörg D. Hoheisel PMCID: PMC134252 A functional screening assay for the isolation of transcription factors Christoph Wiesner, Martina Hoeth, Bernd R. Binder, and Rainer de Martin PMCID: PMC134253 Analysis of RNA flexibility by scanning force spectroscopy Michael Bonin, Rong Zhu, Yvonne Klaue, Jürgen Oberstrass, Egbert Oesterschulze, and Wolfgang Nellen PMCID: PMC134254 Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry Frederic Rosu, Valérie Gabelica, Claude Houssier, and Edwin De Pauw PMCID: PMC134255 Counting CAG repeats in the Huntington’s disease gene by restriction endonuclease EcoP15I cleavage Elisabeth Möncke-Buchner, Stefanie Reich, Merlind Mücke, Monika Reuter, Walter Messer, Erich E. Wanker, and Detlev H. Krüger PMCID: PMC134256 Novel ceftazidime-resistance β-lactamases generated by a codon-based mutagenesis method and selection Paul Gaytán, Joel Osuna, and Xavier Soberón PMCID: PMC134257 Solid phase capturable dideoxynucleotides for multiplex genotyping using mass spectrometry Sobin Kim, John R. Edwards, Liyong Deng, Wendy Chung, and Jingyue Ju PMCID: PMC134258 Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays Hongyue Dai, Michael Meyer, Sergey Stepaniants, Michael Ziman, and Roland Stoughton PMCID: PMC134259 DNA probes on beads arrayed in a capillary, ‘Bead-array’, exhibited high hybridization performance Yoshinobu Kohara, Hideyuki Noda, Kazunori Okano, and Hideki Kambara PMCID: PMC134260 Removal of impurities from transcription factor preparations that alter their DNA-binding properties Liping Sun and Thomas Kodadek PMCID: PMC134261 Corrigendum Nucleic Acids Res. 2002 August 15; 30(16): 3642. PMCID: PMC137991 Corrects: Delisha A. Stewart, et al. Acridine-modified, clamp-forming antisense oligonucleotides synergize with cisplatin to inhibit c-Myc expression and B16-F0 tumor progression. Nucleic Acids Res. 2002 June 1; 30(11): 2565–2574. Erratum Nucleic Acids Res. 2002 August 15; 30(16): 3642. PMCID: PMC137005 Corrects: Jung-Hua Yeh, et al. Control of IL-2Rα gene expression: structural changes within the proximal enhancer/core promoter during T-cell development. Nucleic Acids Res. 2002 May 1; 30(9): 1944–1951. |
