| | Articles Spontaneous and double-strand break-induced recombination, and gene conversion tract lengths, are differentially affected by overexpression of wild-type or ATPase-defective yeast Rad54 Perry M. Kim, Kimberly S. Paffett, Jachen A. Solinger, Wolf-Dietrich Heyer, and Jac A. Nickoloff PMCID: PMC117068 Opposing effects of Krüppel-like factor 4 (gut-enriched Krüppel-like factor) and Krüppel-like factor 5 (intestinal-enriched Krüppel-like factor) on the promoter of the Krüppel-like factor 4 gene Duyen T. Dang, Weidong Zhao, Channing S. Mahatan, Deborah E. Geiman, and Vincent W. Yang PMCID: PMC117055 Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors Li Liu, Shuqiu Cheng, Anja J. van Brabant, and Eric B. Kmiec PMCID: PMC117052 Antisense properties of tricyclo-DNA Dorte Renneberg, Emilie Bouliong, Ulrich Reber, Daniel Schümperli, and Christian J. Leumann PMCID: PMC117067 Deficiency of a novel mismatch repair activity in a bladder tumor cell line Liya Gu, Jianxin Wu, Bei-Bei Zhu, and Guo-Min Li PMCID: PMC117065 Non-contact positions impose site selectivity on Cre recombinase Andreas W. Rüfer and Brian Sauer PMCID: PMC117054 Identification and characterization of transcription factor IIIA from Schizosaccharomyces pombe Deborah B. Schulman and David R. Setzer PMCID: PMC117040 DNA assembly using bis-peptide nucleic acids (bisPNAs) Christopher J. Nulf and David R. Corey PMCID: PMC117044 Use of fluorescent sequence-specific polyamides to discriminate human chromosomes by microscopy and flow cytometry Melanie P. Gygi, Mark D. Ferguson, Heather C. Mefford, Kevin P. Lund, Christine O’Day, Peiwen Zhou, Cynthia Friedman, Ger van den Engh, Mark L. Stolowitz, and Barbara J. Trask PMCID: PMC117061 High efficiency detection of bi-stranded abasic clusters in γ-irradiated DNA by putrescine Alexandros G. Georgakilas, Paula V. Bennett, and Betsy M. Sutherland PMCID: PMC117048 Modulation of enzymatic activities of Escherichia coli DnaB helicase by single-stranded DNA-binding proteins Esther E. Biswas, Pei-Hua Chen, and Subhasis B. Biswas PMCID: PMC117039 The mitochondrial DNA polymerase as a target of oxidative damage Maria A. Graziewicz, Brian J. Day, and William C. Copeland PMCID: PMC117047 Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA Mark P. McPike, Julie M. Sullivan, Jerry Goodisman, and James C. Dabrowiak PMCID: PMC117057 The identification of spermine binding sites in 16S rRNA allows interpretation of the spermine effect on ribosomal 30S subunit functions Ioannis Amarantos, Ioannis K. Zarkadis, and Dimitrios L. Kalpaxis PMCID: PMC117059 Conformational change of Escherichia coli initiator methionyl-tRNAfMet upon binding to methionyl-tRNA formyl transferase Christine Mayer and Uttam L. RajBhandary PMCID: PMC117066 Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event Kazuko Shiroki, Chieko Ohsawa, Natuki Sugi, Motoaki Wakiyama, Kin-ichiro Miura, Manabu Watanabe, Yutaka Suzuki, and Sumio Sugano PMCID: PMC117063 Effects of double-strand break repair proteins on vertebrate telomere structure Chao Wei, Rose Skopp, Minoru Takata, Shunichi Takeda, and Carolyn M. Price PMCID: PMC117051 Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus Cristian Cañestro, Roser Gonzàlez-Duarte, and Ricard Albalat PMCID: PMC117041 Synthesis and application of charge-modified dye-labeled dideoxynucleoside-5′-triphosphates to ‘direct-load’ DNA sequencing Patrick J. Finn, Lei Sun, Satyam Nampalli, Haiguang Xiao, John R. Nelson, J. Anthony Mamone, Greg Grossmann, Parke K. Flick, Carl W. Fuller, and Shiv Kumar PMCID: PMC117042 Co-expression pattern from DNA microarray experiments as a tool for operon prediction Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, and James C. Liao PMCID: PMC117043 DNA bending and unwinding due to the major 1,2-GG intrastrand cross-link formed by antitumor cis-diamminedichloroplatinum(II) are flanking-base independent Kristyna Stehlikova, Hana Kostrhunova, Jana Kasparkova, and Viktor Brabec PMCID: PMC117060 The chAB4 and NF1-related long-range multisequence DNA families are contiguous in the centromeric heterochromatin of several human chromosomes Imre Cserpán, Róbert Katona, Tünde Praznovszky, Edit Novák, Márta Rózsavölgyi, Erika Csonka, Mónika Mórocz, Katalin Fodor, and Gyula Hadlaczky PMCID: PMC117038 Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution Ippeita Dan, Norinobu M. Watanabe, Eriko Kajikawa, Takafumi Ishida, Akhilesh Pandey, and Akihiro Kusumi PMCID: PMC117062 The p120ctn-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides Juliet M. Daniel, Christopher M. Spring, Howard C. Crawford, Albert B. Reynolds, and Akeel Baig PMCID: PMC117053 Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods Kerby Shedden and Stephen Cooper PMCID: PMC117069 On the epigenetic regulation of the human reelin promoter Ying Chen, Rajiv P. Sharma, Robert H. Costa, Erminio Costa, and Dennis R. Grayson PMCID: PMC117056 Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe Subhra Chakraborty, Bhaskarjyoti Sarmah, Niranjan Chakraborty, and Asis Datta PMCID: PMC117036 Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome Franca Fraternali and Luigi Cavallo PMCID: PMC117037 Pentamidine inhibits catalytic activity of group I intron Ca.LSU by altering RNA folding Yi Zhang, Zhijie Li, Daniel S. Pilch, and Michael J. Leibowitz PMCID: PMC117049 Functional analysis of the transcription factor ER71 and its activation of the matrix metalloproteinase-1 promoter Luciano De Haro and Ralf Janknecht PMCID: PMC117045 Structural perturbations in DNA caused by bis-intercalation of ditercalinium visualised by atomic force microscopy Torunn Berge, Nigel S. Jenkins, Richard B. Hopkirk, Michael J. Waring, J. Michael Edwardson, and Robert M. Henderson PMCID: PMC117064 Origin and fate of repeats in bacteria G. Achaz, E. P. C. Rocha, P. Netter, and E. Coissac PMCID: PMC117046 The role of DNA polymerase β in determining sensitivity to ionizing radiation in human tumor cells Conchita Vens, Els Dahmen-Mooren, Manon Verwijs-Janssen, Wim Blyweert, Lise Graversen, Harry Bartelink, and Adrian C. Begg PMCID: PMC117058 Studies on the synthesis of a G-rich octaoligoisonucleotide (isoT)2(isoG)4(isoT)2 by the phosphotriester approach and its formation of G-quartet structure Jun Chen, Liang Ren Zhang, Ji Mei Min, and Li He Zhang PMCID: PMC117050 NAR Methods Online A pH-jump approach for investigating secondary structure refolding kinetics in RNA J. H. A. Nagel, A. P. Gultyaev, K. J. Öistämö, K. Gerdes, and C. W. A. Pleij PMCID: PMC117070 |
