| | Survey and Summary Spatial organization of RNA polymerase II transcription in the nucleus Marilyn N. Szentirmay and Michèle Sawadogo PMCID: PMC105382 Articles Encephalitozoon cuniculi (Microspora) genome: physical map and evidence for telomere-associated rDNA units on all chromosomes Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, Aaron Bensimon, and Christian P. Vivarès PMCID: PMC105373 Differential functional behavior of viral ![[var phi]](corehtml/pmc/pmcents/x03C6.gif) 29, Nf and GA-1 SSB proteins Irene Gascón, José M. Lázaro, and Margarita Salas PMCID: PMC105360 Repair of tRNAs in metazoan mitochondria Andreas S. Reichert and Mario Mörl PMCID: PMC105380 Domain specific interaction in the XRCC1–DNA polymerase β complex Assen Marintchev, Anthony Robertson, Emilios K. Dimitriadis, Rajendra Prasad, Samuel H. Wilson, and Gregory P. Mullen PMCID: PMC105377 DNA repair in a yeast origin of replication: contributions of photolyase and nucleotide excision repair Bernhard Suter, Ralf-Erik Wellinger, and Fritz Thoma PMCID: PMC105381 Optimizing heterologous expression in Dictyostelium: importance of 5′ codon adaptation Elisa B. Vervoort, Arno van Ravestein, Noël N. M. E. van Peij, Judith C. Heikoop, Peter J. M. van Haastert, Gijs F. Verheijden, and Maarten H. K. Linskens PMCID: PMC105365 Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA May Meroueh, Patrick J. Grohar, Jian Qiu, John SantaLucia, Jr, Stephen A. Scaringe, and Christine S. Chow PMCID: PMC105375 Codon usage in Chlamydia trachomatis is the result of strand-specific mutational biases and a complex pattern of selective forces Héctor Romero, Alejandro Zavala, and Héctor Musto PMCID: PMC105376 Functional interactions between an atypical NF-κB site from the rat CYP2B1 promoter and the transcriptional repressor RBP-Jκ/CBF1 Sang Hyun Lee, Xiao-li Wang, and Jeff DeJong PMCID: PMC105370 Bi-directional replication and random termination D. Santamaría, E. Viguera, M. L. Martínez-Robles, O. Hyrien, P. Hernández, D. B. Krimer, and J. B. Schvartzman PMCID: PMC105368 Differential mRNA expression of the human DNA methyltransferases (DNMTs) 1, 3a and 3b during the G0/G1 to S phase transition in normal and tumor cells Keith D. Robertson, Khandan Keyomarsi, Felicidad A. Gonzales, Mihaela Velicescu, and Peter A. Jones PMCID: PMC105379 Structural organization of Staf–DNA complexes Myriam Schaub, Alain Krol, and Philippe Carbon PMCID: PMC105361 Thermodynamics of DNA binding of MM17, a ‘single chain dimer’ of transcription factor MASH-1 Martin Sieber and Rudolf K. Allemann PMCID: PMC105363 Tethered naphthalene diimide-based intercalators for DNA triplex stabilization Diego A. Gianolio, Joanna M. Segismundo, and Larry W. McLaughlin PMCID: PMC105359 Mitochondrial DNA damage and a hypoxic response are induced by CoCl2 in rat neuronal PC12 cells Guichun Wang, Tapas K. Hazra, Sankar Mitra, Heung-Man Lee, and Ella W. Englander PMCID: PMC105383 Methylation mosaicism of 5′-(CGG)n-3′ repeats in fragile X, premutation and normal individuals Bülent Genç, Herbert Müller-Hartmann, Michael Zeschnigk, Heidrun Deissler, Birgit Schmitz, Frank Majewski, Alexander von Gontard, and Walter Doerfler PMCID: PMC105369 Targeted elimination of zygotic messages in Xenopus laevis embryos by modified oligonucleotides possessing terminal cationic linkages John M. Dagle, Jennifer L. Littig, Lillian B. Sutherland, and Daniel L. Weeks PMCID: PMC105372 Specific binding of Hoechst 33258 to site 1 thymidylate synthase mRNA Junhyeong Cho and Robert R. Rando PMCID: PMC105371 Cloning of neuronal mtDNA variants in cultured cells by synaptosome fusion with mtDNA-less cells Ian Trounce, Janet Schmiedel, Hsiu-Chuan Yen, Seyed Hosseini, Michael D. Brown, Jeffrey J. Olson, and Douglas C. Wallace PMCID: PMC105374 Crystal structure of a DNA·RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC) Yong Xiong and Muttaiya Sundaralingam PMCID: PMC105378 The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer Craig K. Sherburne, Trevor D. Lawley, Matthew W. Gilmour, F. R. Blattner, Valerie Burland, Erik Grotbeck, Debra J. Rose, and Diane E. Taylor PMCID: PMC105367 Hemicatenanes form upon inhibition of DNA replication Isabelle Lucas and Olivier Hyrien PMCID: PMC105366 Flanking sequences with an essential role in hydrolysis of a self-cleaving group I-like ribozyme Christer Einvik, Henrik Nielsen, Reza Nour, and Steinar Johansen PMCID: PMC105364 Histone deacetylase-independent transcriptional repression by methyl-CpG-binding protein 2 Fang Yu, Jens Thiesen, and Wolf H. Strätling PMCID: PMC105362 NAR Methods Online Antisense delivery using protamine–oligonucleotide particles Monika Junghans, Jörg Kreuter, and Andreas Zimmer PMCID: PMC105384 Alkaline fixation drastically improves the signal of in situ hybridization Eugenia Basyuk, Edouard Bertrand, and Laurent Journot PMCID: PMC105385 Normalization strategies for cDNA microarrays Johannes Schuchhardt, Dieter Beule, Arif Malik, Eryc Wolski, Holger Eickhoff, Hans Lehrach, and Hanspeter Herzel PMCID: PMC105386 In-gel DNA radiolabelling and two-dimensional pulsed field gel electrophoresis procedures suitable for fingerprinting and mapping small eukaryotic genomes Jean-François Brugère, Emmanuel Cornillot, Guy Méténier, and Christian P. Vivarès PMCID: PMC105387 Characterization of the mRNA ligands bound by the RNA binding protein hnRNP A2 utilizing a novel in vivo technique Seth A. Brooks and William F. C. Rigby PMCID: PMC105388 |
