| | Articles A novel RNA-binding protein from Triturus carnifex identified by RNA-ligand screening with the newt hammerhead ribozyme Michela A. Denti, A. Emilio Martínez de Alba, Rudolf Sägesser, Mina Tsagris, and Martin Tabler PMCID: PMC102618 MethTools—a toolbox to visualize and analyze DNA methylation data Christoph Grunau, Ruben Schattevoy, Niels Mache, and André Rosenthal PMCID: PMC102603 Improving dideoxynucleotide-triphosphate utilisation by the hyper-thermophilic DNA polymerase from the archaeon Pyrococcus furiosus Steven J. Evans, Mark J. Fogg, Anthony Mamone, Maria Davis, Laurence H. Pearl, and Bernard A. Connolly PMCID: PMC102620 A simple in vitro Tn7-based transposition system with low target site selectivity for genome and gene analysis Matthew C. Biery, Fiona J. Stewart, Anne E. Stellwagen, Elisabeth A. Raleigh, and Nancy L. Craig PMCID: PMC102592 Genetic analysis of a La homolog in Drosophila melanogaster Chunyang Bai and Peter P. Tolias PMCID: PMC102613 Identification of a base-specific contact between the restriction endonuclease SsoII and its recognition sequence by photocross-linking Elena A. Kubareva, Hubert Thole, Anna S. Karyagina, Tatiana S. Oretskaya, Alfred Pingoud, and Vera Pingoud PMCID: PMC102617 Transcripts of the ndhH–D operon of barley plastids: possible role of unedited site III in splicing of the ndhA intron Eva María del Campo, Bartolomé Sabater, and Mercedes Martín PMCID: PMC102609 An ‘environment to nucleus’ signaling system operates in B lymphocytes: redox status modulates BSAP/Pax-5 activation through Ref-1 nuclear translocation Gianluca Tell, Alessandro Zecca, Lucia Pellizzari, Paola Spessotto, Alfonso Colombatti, Mark R. Kelley, Giuseppe Damante, and Carlo Pucillo PMCID: PMC102597 Transactivation and growth suppression by the gut-enriched Krüppel-like factor (Krüppel-like factor 4) are dependent on acidic amino acid residues and protein–protein interaction Deborah E. Geiman, Han Ton-That, Jerainne M. Johnson, and Vincent W. Yang PMCID: PMC102607 Excision repair at the level of the nucleotide in the upstream control region, the coding sequence and in the region where transcription terminates of the Saccharomyces cerevisiae MFA2 gene and the role of RAD26 Yumin Teng and Raymond Waters PMCID: PMC102608 The tetracycline-responsive promoter contains functional interferon-inducible response elements Andreas Rang and Hans Will PMCID: PMC102598 Tissue-specific chromatin structure of the phenobarbital- responsive unit and proximal promoter of CYP2B1/2 and modulation by phenobarbital Jongsook Kim, Ilia Rivera-Rivera, and Byron Kemper PMCID: PMC102623 Polymorphisms in the large subunit of human RNA polymerase II as target for allele-specific inhibition Anneloor L. M. A. ten Asbroek, Kees Fluiter, Marjon van Groenigen, Marleen Nooij, and Frank Baas PMCID: PMC102615 Characterization of the E.coli poly(A) polymerase: nucleotide specificity, RNA-binding affinities and RNA structure dependence Shlomit Yehudai-Resheff and Gadi Schuster PMCID: PMC102612 Regulation of double-strand break-induced mammalian homologous recombination by UBL1, a RAD51-interacting protein Wenhui Li, Bahar Hesabi, Angela Babbo, Carol Pacione, Jingmei Liu, David J. Chen, Jac A. Nickoloff, and Zhiyuan Shen PMCID: PMC102610 Understanding oligonucleotide-mediated inhibition of gene expression in Xenopus laevis oocytes Cheryl Bailey and Daniel L. Weeks PMCID: PMC102614 Recognition of 5-aminouracil (U#) in the central strand of a DNA triplex: orientation selective binding of different third strand bases Vipul S. Rana and Krishna N. Ganesh PMCID: PMC102601 Stereochemical control of DNA biosynthesis Vasily V. Sosunov, Fanny Santamaria, Lyubov S. Victorova, Gilles Gosselin, Bernard Rayner, and Alexander A. Krayevsky PMCID: PMC102595 Specific bonding of puromycin to full-length protein at the C-terminus Etsuko Miyamoto-Sato, Naoto Nemoto, Kensei Kobayashi, and Hiroshi Yanagawa PMCID: PMC102619 The catalytic subunit DNA-dependent protein kinase (DNA-PKcs) facilitates recovery from radiation-induced inhibition of DNA replication Jun Guan, Steven DiBiase, and George Iliakis PMCID: PMC102621 DNA sequence analysis by hybridization with oligonucleotide microchips: MALDI mass spectrometry identification of 5mers contiguously stacked to microchip oligonucleotides Andrey A. Stomakhin, Vadim A. Vasiliskov, Edward Timofeev, Dennis Schulga, Richard J. Cotter, and Andrei D. Mirzabekov PMCID: PMC102611 Identification of a novel 70 kDa protein that binds to the core promoter element and is essential for ribosomal DNA transcription Kazuo Yamamoto, Atsuro Koga, Mika Yamamoto, Yu-ichi Nishi, Taka-aki Tamura, Yasuhisa Nogi, and Masami Muramatsu PMCID: PMC102616 Evaluation and characterization of catabolite-responsive elements (cre) of Bacillus subtilis Yasuhiko Miwa, Atsuo Nakata, Atsushi Ogiwara, Mami Yamamoto, and Yasutaro Fujita PMCID: PMC102602 Poly(A)-binding protein I of Leishmania: functional analysis and localisation in trypanosomatid parasites Elizabeth J. Bates, Ellen Knuepfer, and Deborah F. Smith PMCID: PMC102622 Evidence for evolutionarily conserved secondary structure in the H19 tumor suppressor RNA Veronica Juan, Chad Crain, and Charles Wilson PMCID: PMC102599 A highly ordered structure in V(D)J recombination cleavage complexes is facilitated by HMG1 Xianming Mo, Tu Bailin, Scott Noggle, and Moshe J. Sadofsky PMCID: PMC102605 Protein sequences conserved in prokaryotic aminoacyl-tRNA synthetases are important for the activity of the processivity factor of human mitochondrial DNA polymerase José A. Carrodeguas and Daniel F. Bogenhagen PMCID: PMC102604 Purification and characterization of the DNA cleavage and recognition site of I-ScaI mitochondrial group I intron encoded endonuclease produced in Escherichia coli Claude Monteilhet, Dorota Dziadkowiec, Tomasz Szczepanek, and Jaga Lazowska PMCID: PMC102596 Structures of m-iodo Hoechst–DNA complexes in crystals with reduced solvent content: implications for minor groove binder drug design Christopher J. Squire, L. J. Baker, George R. Clark, Roger F. Martin, and Jonathan White PMCID: PMC102593 Intermolecular interactions and water structure in a condensed phase B-DNA crystal George R. Clark, Christopher J. Squire, L. J. Baker, Roger F. Martin, and Jonathan White PMCID: PMC102594 RNA-binding properties of the mitochondrial Y-box protein RBP16 Michel Pelletier, Melissa M. Miller, and Laurie K. Read PMCID: PMC102606 Terminal deoxynucleotidyl transferase catalyzes the reaction of DNA phosphorylation Andrey A. Arzumanov, Lyubov S. Victorova, Maxim V. Jasko, Dmitry S. Yesipov, and Alexander A. Krayevsky PMCID: PMC102600 NAR Methods Online A novel procedure for efficient genotyping of single nucleotide polymorphisms Sascha Sauer, Doris Lechner, Kurt Berlin, Hans Lehrach, Jean-Louis Escary, Nick Fox, and Ivo Glynne Gut PMCID: PMC102624 Functional coexpression of serine protein kinase SRPK1 and its substrate ASF/SF2 in Escherichia coli Bai-Gong Yue, Paul Ajuh, Göran Akusjärvi, Angus I. Lamond, and Jan-Peter Kreivi PMCID: PMC102625 |
