| | Articles SURVEY AND SUMMARY A compilation of cellular transcription factor interactions with the HIV-1 LTR promoter Lloyd A. Pereira, Karen Bentley, Anna Peeters, Melissa J. Churchill, and Nicholas J. Deacon PMCID: PMC102541 Sp1 cooperates with c-Myc to activate transcription of the human telomerase reverse transcriptase gene (hTERT) Satoru Kyo, Masahiro Takakura, Takahiro Taira, Taro Kanaya, Hideaki Itoh, Masuo Yutsudo, Hiroyoshi Ariga, and Masaki Inoue PMCID: PMC102554 Association of a protein phosphatase 1 activity with the human factor C1 (HCF) complex Paul M. Ajuh, Gareth J. Browne, Nicola A. Hawkes, Patricia T. W. Cohen, Stefan G. E. Roberts, and Angus I. Lamond PMCID: PMC102561 Analysis of the c-myc IRES; a potential role for cell-type specific trans-acting factors and the nuclear compartment Mark Stoneley, Tatyana Subkhankulova, John P. C. Le Quesne, Mark J. Coldwell, Catherine L. Jopling, Graham J. Belsham, and Anne E. Willis PMCID: PMC102558 Prediction of transcription regulatory sites in Archaea by a comparative genomic approach M. S. Gelfand, E. V. Koonin, and A. A. Mironov PMCID: PMC102549 Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima Peder Worning, Lars J. Jensen, Karen E. Nelson, Søren Brunak, and David W. Ussery PMCID: PMC102551 Structural basis for recognition of the RNA major groove in the tau exon 10 splicing regulatory element by aminoglycoside antibiotics Luca Varani, Maria Grazia Spillantini, Michel Goedert, and Gabriele Varani PMCID: PMC102548 Active site constraints in the hydrolysis reaction catalyzed by bacterial RNase P: analysis of precursor tRNAs with a single 3′-S-phosphorothiolate internucleotide linkage Jens M. Warnecke, Erik J. Sontheimer, Joseph A. Piccirilli, and Roland K. Hartmann PMCID: PMC102553 Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: solution NMR structure of the 2:1 complex with d(CTTTTGCAAAAG)2 Evripidis Gavathiotis, Gary J. Sharman, and Mark S. Searle PMCID: PMC102559 The ribosomal P-proteins of the medfly Ceratitis capitata form a heterogeneous stalk structure interacting with the endogenous P-proteins, in conditional P0-null strains of the yeast Saccharomyces cerevisiae Mary Elizabeth Gagou, M. A. Rodriguez Gabriel, Juan P. G. Ballesta, and Sophia Kouyanou PMCID: PMC102563 Positional characterisation of false positives from computational prediction of human splice sites T. A. Thanaraj PMCID: PMC102552 The efficiency of Escherichia coli selenocysteine insertion is influenced by the immediate downstream nucleotide Karen E. Sandman and Christopher J. Noren PMCID: PMC102542 The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons Christine M. Gifford and Susan S. Wallace PMCID: PMC102543 Stabilities of intrastrand pyrimidine motif DNA and RNA triple helices Paula Rodrigues Hoyne, A. Marquis Gacy, Cynthia T. McMurray, and L. James Maher III PMCID: PMC102562 The virtues of self-binding: high sequence specificity for RNA cleavage by self-processed hammerhead ribozymes Tatsuo Ohmichi and Eric T. Kool PMCID: PMC102550 cis and trans factors affecting Mos1 mariner evolution and transposition in vitro, and its potential for functional genomics Luiz R. O. Tosi and Stephen M. Beverley PMCID: PMC102556 Selection of functional tRNA primers and primer binding site sequences from a retroviral combinatorial library: identification of new functional tRNA primers in murine leukemia virus replication Anders H. Lund, Mogens Duch, and Finn Skou Pedersen PMCID: PMC102544 Activation of c-myc promoter P1 by immunoglobulin κ gene enhancers in Burkitt lymphoma: functional characterization of the intron enhancer motifs κB, E box 1 and E box 2, and of the 3′ enhancer motif PU Nicola E. Wittekindt, Konstanze Hörtnagel, Christian Geltinger, and Axel Polack PMCID: PMC102546 Isolation and characterization of human orthologs of yeast CCR4–NOT complex subunits Thomas K. Albert, Marc Lemaire, Nynke L. van Berkum, Reiner Gentz, Martine A. Collart, and H. Th. Marc Timmers PMCID: PMC102560 Optimized synthesis of phosphorothioate oligodeoxyribonucleotides substituted with a 5′-protected thiol function and a 3′-amino group Yves Aubert, Sylvain Bourgerie, Laurent Meunier, Roger Mayer, Annie-Claude Roche, Michel Monsigny, Nguyen T. Thuong, and Ulysse Asseline PMCID: PMC102547 Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration Sanggyu Lee and Mark D. Garfinkel PMCID: PMC102545 Transcription-coupled DNA repair in yeast transcription factor IIE (TFIIE) mutants Lori Lommel, Sean M. Gregory, Karen I. Becker, and Kevin S. Sweder PMCID: PMC102557 Three different proteins recognize a multifunctional determinant that controls replication initiation, fork arrest and transcription in Tetrahymena Mohammad Mohammad, Swati Saha, and Geoffrey M. Kapler PMCID: PMC102555 NAR Methods Online Nucleic acid mutation analysis using catalytic DNA Murray J. Cairns, Andrew King, and Lun-Quan Sun PMCID: PMC102564 Optimised ligation of oligonucleotides by thermal ligases: comparison of Thermus scotoductus and Rhodothermus marinus DNA ligases to other thermophilic ligases J. Nicholas Housby, Sigrídur H. Thorbjarnardóttir, Zophonías O. Jónsson, and Edwin M. Southern PMCID: PMC102565 |
