| | Articles A question of size: the eukaryotic proteome and the problems in defining it Paul M. Harrison, Anuj Kumar, Ning Lang, Michael Snyder, and Mark Gerstein PMCID: PMC101239 Compilation and analysis of group II intron insertions in bacterial genomes: evidence for retroelement behavior Lixin Dai and Steven Zimmerly PMCID: PMC101233 SGS1 is a multicopy suppressor of srs2: functional overlap between DNA helicases Hocine W. Mankouri, Tim J. Craig, and Alan Morgan PMCID: PMC101237 Identification of HDAC10, a novel class II human histone deacetylase containing a leucine-rich domain Jenny J. Tong, Jianhong Liu, Nicholas R. Bertos, and Xiang-Jiao Yang PMCID: PMC101247 Chemical incorporation of 1-methyladenosine into oligonucleotides Sergey N. Mikhailov, Jef Rozenski, Ekaterina V. Efimtseva, Roger Busson, Arthur Van Aerschot, and Piet Herdewijn PMCID: PMC101250 The contribution of 2′-hydroxyls to the cleavage activity of the Neurospora VS ribozyme Vanita D. Sood, Soraya Yekta, and Richard A. Collins PMCID: PMC101248 Methylation-dependent silencing at the H19 imprinting control region by MeCP2 Robert A. Drewell, Carolyn J. Goddard, Jean O. Thomas, and M. Azim Surani PMCID: PMC101245 Glucose-inducible expression of rrg1+ in Schizosaccharomyces pombe: post-transcriptional regulation of mRNA stability mediated by the downstream region of the poly(A) site Min Ji Kim, Jae Bum Kim, Dong Sun Kim, and Sang Dai Park PMCID: PMC101252 Phosphorylation of mammalian translation initiation factor 5 (eIF5) in vitro and in vivo Romit Majumdar, Amitabha Bandyopadhyay, Haiteng Deng, and Umadas Maitra PMCID: PMC101238 Interaction generality, a measurement to assess the reliability of a protein–protein interaction Rintaro Saito, Harukazu Suzuki, and Yoshihide Hayashizaki PMCID: PMC101243 RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta Jianzhi Zhang, Kimberly D. Dyer, and Helene F. Rosenberg PMCID: PMC101240 Directionality of λ plasmid DNA replication carried out by the heritable replication complex Sylwia Baraáska, Gragyna Konopa, and Grzegorz WÉgrzyn PMCID: PMC101236 Protein and drug interactions in the minor groove of DNA Zdenek Morávek, Stephen Neidle, and Bohdan Schneider PMCID: PMC101234 Regularities of context-dependent codon bias in eukaryotic genes Alexei Fedorov, Serge Saxonov, and Walter Gilbert PMCID: PMC101244 Processing of nucleopeptides mimicking the topoisomerase I–DNA covalent complex by tyrosyl-DNA phosphodiesterase Laurent Debéthune, Glenda Kohlhagen, Anna Grandas, and Yves Pommier PMCID: PMC101246 The 3′-untranslated regions of cytoskeletal muscle mRNAs inhibit translation by activating the double-stranded RNA-dependent protein kinase PKR Jean M. Nussbaum, Shobha Gunnery, and Michael B. Mathews PMCID: PMC101232 YY1 activates Msx2 gene independent of bone morphogenetic protein signaling D. P. Tan, K. Nonaka, G. H. Nuckolls, Y. H. Liu, R. E. Maxson, H. C. Slavkin, and L. Shum PMCID: PMC101235 Homologous recombination is essential for RAD51 up-regulation in Saccharomyces cerevisiae following DNA crosslinking damage Yuval Cohen, Michele Dardalhon, and Dietrich Averbeck PMCID: PMC101242 Analysis of similarity within 142 pairs of orthologous intergenic regions of Caenorhabditis elegans and Caenorhabditis briggsae Colleen T. Webb, Svetlana A. Shabalina, Aleksey Yu. Ogurtsov, and Alexey S. Kondrashov PMCID: PMC101251 Magnesium is required for specific DNA binding of the CREB B-ZIP domain Jonathan R. Moll, Asha Acharya, Jozset Gal, Alain A. Mir, and Charles Vinson PMCID: PMC101231 Identification and comparative analysis of the chloroplast α-subunit gene of DNA-dependent RNA polymerase from seven Euglena species Elena V. Sheveleva, Nicole V. Giordani, and Richard B. Hallick PMCID: PMC101230 Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors Martha L. Bulyk, Philip L. F. Johnson, and George M. Church PMCID: PMC101241 UV-induced T→C transition at a TT photoproduct site is dependent on Saccharomyces cerevisiae polymerase η in vivo Hong Zhang and Wolfram Siede PMCID: PMC101249 BALSA: Bayesian algorithm for local sequence alignment Bobbie-Jo M. Webb, Jun S. Liu, and Charles E. Lawrence PMCID: PMC101229 Mutations in domain V of the 23S ribosomal RNA of Bacillus subtilis that inactivate its protein folding property in vitro Saheli Chowdhury, Saumen Pal, Jaydip Ghosh, and Chanchal DasGupta PMCID: PMC101228 NAR Methods Online An improved helper phage system for efficient isolation of specific antibody molecules in phage display Hyunjung Baek, Kyoung-ho Suk, Yong-hwan Kim, and Sanghoon Cha PMCID: PMC101254 Single nucleotide polymorphism detection by combinatorial fluorescence energy transfer tags and biotinylated dideoxynucleotides Anthony K. Tong and Jingyue Ju PMCID: PMC101255 A novel medium throughput quantitative competitive PCR technology to simultaneously measure mRNA levels from multiple genes Junlong Zhang, Ian N. M. Day, and Christopher D. Byrne PMCID: PMC101256 Tumour class prediction and discovery by microarray-based DNA methylation analysis Péter Adorján, Jürgen Distler, Evelyne Lipscher, Fabian Model, Jürgen Müller, Cécile Pelet, Aron Braun, Andrea R. Florl, David Gütig, Gabi Grabs, André Howe, Mischo Kursar, Ralf Lesche, Erik Leu, André Lewin, Sabine Maier, Volker Müller, Thomas Otto, Christian Scholz, Wolfgang A. Schulz, Hans-Helge Seifert, Ina Schwope, Heike Ziebarth, Kurt Berlin, Christian Piepenbrock, and Alexander Olek PMCID: PMC101257 Facile method for automated genotyping of single nucleotide polymorphisms by mass spectrometry Sascha Sauer, David H. Gelfand, Francis Boussicault, Keith Bauer, Fred Reichert, and Ivo G. Gut PMCID: PMC101258 Corrigendum Nucleic Acids Res. 2002 March 1; 30(5): 1286. PMCID: PMC101253 Corrects: CORRIGENDUM. Nucleic Acids Res. 2002 March 1; 30(5): 1286. |
