| | Articles RadA protein from Archaeoglobus fulgidus forms rings, nucleoprotein filaments and catalyses homologous recombination Michael J. McIlwraith, David R. Hall, Alicja Z. Stasiak, Andrzej Stasiak, Dale B. Wigley, and Stephen C. West PMCID: PMC92570 Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp Béatrice Clouet d’Orval, Marie-Line Bortolin, Christine Gaspin, and Jean-Pierre Bachellerie PMCID: PMC92551 A minimal Bcl-x promoter is activated by Brn-3a and repressed by p53 Katharine L. Sugars, Vishwanie Budhram-Mahadeo, Graham Packham, and David S. Latchman PMCID: PMC92563 Correction of liver dysfunction in DNA repair-deficient mice with an ERCC1 transgene Jim Selfridge, Kan-Tai Hsia, Nicola J. Redhead, and David W. Melton PMCID: PMC92547 Identification of factors mediating the developmental regulation of the early acting –3.9 kb chicken lysozyme enhancer element Pascal Lefevre, Joanna Kontaraki, and Constanze Bonifer PMCID: PMC92539 A second eIF4E protein in Schizosaccharomyces pombe has distinct eIF4G-binding properties Marina Ptushkina, Karine Berthelot, Tobias von der Haar, Lars Geffers, Jim Warwicker, and John E. G. McCarthy PMCID: PMC92561 RNA polymerase II and III transcription factors can stimulate DNA replication by modifying origin chromatin structures Morana Bodmer-Glavas, Karin Edler, and Alcide Barberis PMCID: PMC92542 An mRNA degrading complex in Rhodobacter capsulatus Stephanie Jäger, Oliver Fuhrmann, Claudia Heck, Markus Hebermehl, Emile Schiltz, Reinhard Rauhut, and Gabriele Klug PMCID: PMC92556 Transcription of potato spindle tuber viroid by RNA polymerase II starts predominantly at two specific sites Andreas Fels, Kanghong Hu, and Detlev Riesner PMCID: PMC92535 Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation Carvell T. Nguyen, Felicidad A. Gonzales, and Peter A. Jones PMCID: PMC92514 Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic polη François Boudsocq, Shigenori Iwai, Fumio Hanaoka, and Roger Woodgate PMCID: PMC92520 Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain Atsushi Yamagata, Ryoji Masui, Yoshimitsu Kakuta, Seiki Kuramitsu, and Keiichi Fukuyama PMCID: PMC92510 A downstream regulatory element located within the coding sequence mediates autoregulated expression of the yeast fatty acid synthase gene FAS2 by the FAS1 gene product Peter Wenz, Sabine Schwank, Ursula Hoja, and Hans-Joachim Schüller PMCID: PMC92567 REPuter: the manifold applications of repeat analysis on a genomic scale Stefan Kurtz, Jomuna V. Choudhuri, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, and Robert Giegerich PMCID: PMC92531 Prediction of DNA single-strand conformation polymorphism: analysis by capillary electrophoresis and computerized DNA modeling Donald H. Atha, Wojciech Kasprzak, Catherine D. O’Connell, and Bruce A. Shapiro PMCID: PMC92558 Control of DNA excision efficiency in Paramecium Karine Dubrana and Laurence Amar PMCID: PMC92537 Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging Kyoko Hanawa-Suetsugu, Valérie Bordeau, Hyouta Himeno, Akira Muto, and Brice Felden PMCID: PMC92554 The abundance of sterile transcripts in Giardia lamblia Heidi G. Elmendorf, Steven M. Singer, and Theodore E. Nash PMCID: PMC92544 The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH Petr Fojtík and Michaela Vorlícková PMCID: PMC92515 Characterization of the type IV restriction modification system BspLU11III from Bacillus sp. LU11 Konstantin Lepikhov, Andrei Tchernov, Ludmila Zheleznaja, Nicholas Matvienko, Joern Walter, and Thomas A. Trautner PMCID: PMC92511 Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales James A. McCloskey, David E. Graham, Shaolian Zhou, Pamela F. Crain, Michael Ibba, Jordan Konisky, Dieter Söll, and Gary J. Olsen PMCID: PMC92529 Degradation of the unstable EP1 mRNA in Trypanosoma brucei involves initial destruction of the 3′-untranslated region Henriette Irmer and Christine Clayton PMCID: PMC92565 Extrahelical cytosine bases in DNA duplexes containing d[GCC]n·d[GCC]n repeats: detection by a mechlorethamine crosslinking reaction Pornchai Rojsitthisak, Rebecca M. Romero, and Ian S. Haworth PMCID: PMC92524 RNAMotif, an RNA secondary structure definition and search algorithm Thomas J. Macke, David J. Ecker, Robin R. Gutell, Daniel Gautheret, David A. Case, and Rangarajan Sampath PMCID: PMC92549 Sea urchin mtDBP is a two-faced transcription termination factor with a biased polarity depending on the RNA polymerase Patricio Fernandez-Silva, Paola Loguercio Polosa, Marina Roberti, Barbara Di Ponzio, Maria Nicola Gadaleta, Julio Montoya, and Palmiro Cantatore PMCID: PMC92518 A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids Xiaolian Gao, Eric LeProust, Hua Zhang, Onnop Srivannavit, Erdogan Gulari, Peilin Yu, Ciro Nishiguchi, Qin Xiang, and Xiaochuan Zhou PMCID: PMC92522 Detection of the 5′-cap structure of messenger RNAs with the use of the cap-jumping approach V. A. Efimov, O. G. Chakhmakhcheva, J. Archdeacon, J. M. Fernandez, O. N. Fedorkin, Yu. L. Dorokhov, and J. G. Atabekov PMCID: PMC92527 Heat shock regulatory elements are present in telomeric repeats of Chironomus thummi Jose Luis Martinez, Tilman Sanchez-Elsner, Gloria Morcillo, and Jose Luis Diez PMCID: PMC92508 NAR Methods Online Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36 000 bovine ESTs Akiko Takasuga, Shinji Hirotsune, Reiko Itoh, Ayako Jitohzono, Harumi Suzuki, Hisashi Aso, and Yoshikazu Sugimoto PMCID: PMC92572 Behavior of DNA fibers stretched by precise meniscus motion control Kazunori Otobe and Toshio Ohtani PMCID: PMC92573 General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: application to Pseudomonas putida KT2440 Christian Weinel, Burkhard Tümmler, Helmut Hilbert, Karen E. Nelson, and Claudia Kiewitz PMCID: PMC92575 Detection of simple mutations and polymorphisms in large genomic regions Evgeni V. Sokurenko, Veronika Tchesnokova, Anthony T. Yeung, Catherine A. Oleykowski, Elena Trintchina, Kelly T. Hughes, Rebecca A. Rashid, J. Mark Brint, Steve L. Moseley, and Stephen Lory PMCID: PMC92577 Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches Carsten Rosenow, Rini Mukherjee Saxena, Mark Durst, and Thomas R. Gingeras PMCID: PMC92579 Isolation of viral coat protein mutants with altered assembly and aggregation properties David S. Peabody and Lina Al-Bitar PMCID: PMC92581 Preparing a human membrane and secreted protein-enriched cDNA library using PCR primers derived from a genomic database Yi Fan, Chih Yuan Wu, Cheng Wei Chen, Tse Wen Chang, and Carmay Lim PMCID: PMC92583 Modulation of myosin A expression by a newly established tetracycline repressor-based inducible system in Toxoplasma gondii Markus Meissner, Susan Brecht, Hermann Bujard, and Dominique Soldati PMCID: PMC92585 L-RCA (ligation-rolling circle amplification): a general method for genotyping of single nucleotide polymorphisms (SNPs) Xiaoquan Qi, Saleha Bakht, Katrien M. Devos, Mike D. Gale, and Anne Osbourn PMCID: PMC92587 |
