| | Survey and Summary Comparison
of the RNA polymerase III transcription machinery in Schizosaccharomyces
pombe, Saccharomyces cerevisiae and human Ying Huang and Richard
J. Maraia Nucleic Acids Res. 2001 July 1; 29(13): 2675–2690. PMCID: PMC55761 Articles A sensitive, single-tube assay
to measure the enzymatic activities of influenza RNA polymerase
and other poly(A) polymerases: application to kinetic and inhibitor
analysis Lisa Hooker, Rebecca Strong, Ralph Adams, Balraj Handa, John H. Merrett, Joseph A. Martin, and Klaus Klumpp Nucleic Acids Res. 2001 July 1; 29(13): 2691–2698. PMCID: PMC55778 Histone variant macroH2A contains
two distinct macrochromatin domains capable of directing macroH2A
to the inactive X chromosome Brian P. Chadwick, Cory
M. Valley, and Huntington
F. Willard Nucleic Acids Res. 2001 July 1; 29(13): 2699–2705. PMCID: PMC55781 Analysis of the open region of
RNA polymerase II transcription complexes in the early phase of elongation Ulrike Fiedler and H.
Th. Marc Timmers Nucleic Acids Res. 2001 July 1; 29(13): 2706–2714. PMCID: PMC55769 Primer-dependent synthesis by
poliovirus RNA-dependent RNA polymerase (3Dpol) Virgen Rodriguez-Wells, Stephen
J. Plotch, and Jeffrey
J. DeStefano Nucleic Acids Res. 2001 July 1; 29(13): 2715–2724. PMCID: PMC55776 Translesional synthesis on DNA
templates containing the 2′-deoxyribonolactone
lesion Nathalie Berthet, Yoann Roupioz, Jean-François Constant, Mitsuharu Kotera, and Jean Lhomme Nucleic Acids Res. 2001 July 1; 29(13): 2725–2732. PMCID: PMC55770 Accumulation of H/ACA
snoRNPs depends on the integrity of the conserved central domain
of the RNA-binding protein Nhp2p Anthony Henras, Christophe Dez, Jacqueline Noaillac-Depeyre, Yves Henry, and Michèle Caizergues-Ferrer Nucleic Acids Res. 2001 July 1; 29(13): 2733–2746. PMCID: PMC55775 Ribosomal protein gene cluster
analysis in eubacterium genomics: homology between Sinorhizobium
meliloti strain 1021 and Bacillus subtilis Frédérique Barloy-Hubler, Valérie Lelaure, and Francis Galibert Nucleic Acids Res. 2001 July 1; 29(13): 2747–2756. PMCID: PMC55768 Initiation of HIV-2 reverse transcription:
a secondary structure model of the RNA–tRNALys3 duplex Frédéric Freund, Florence Boulmé, Simon Litvak, and Laura Tarrago-Litvak Nucleic Acids Res. 2001 July 1; 29(13): 2757–2765. PMCID: PMC55777 In vivo co-localisation
of MBNL protein with DMPK expanded-repeat transcripts Majid Fardaei, Ken Larkin, J.
David Brook, and Marion G. Hamshere Nucleic Acids Res. 2001 July 1; 29(13): 2766–2771. PMCID: PMC55763 Unusually wide co-factor tolerance
in a metalloenzyme; divalent metal ions modulate endo–exonuclease activity
in T5 exonuclease Scott J. Garforth, Dipak Patel, Min Feng, and Jon
R. Sayers Nucleic Acids Res. 2001 July 1; 29(13): 2772–2779. PMCID: PMC55779 Significantly higher activity
of a cytoplasmic hammerhead ribozyme than a corresponding nuclear counterpart:
engineered tRNAs with an extended 3′ end can
be exported efficiently and specifically to the cytoplasm in mammalian
cells Tomoko Kuwabara, Masaki Warashina, Shiori Koseki, Masayuki Sano, Jun Ohkawa, Kazuhisa Nakayama, and Kazunari Taira Nucleic Acids Res. 2001 July 1; 29(13): 2780–2788. PMCID: PMC55762 E2F-1 represses transcription
of the human telomerase reverse transcriptase gene David L. Crowe, Dan
C. Nguyen, Kenneth
J. Tsang, and Satoru Kyo Nucleic Acids Res. 2001 July 1; 29(13): 2789–2794. PMCID: PMC55771 Hexamminecobalt(III)-induced
condensation of calf thymus DNA: circular dichroism and hydration measurements Besik I. Kankia, Vitaly Buckin, and Victor A. Bloomfield Nucleic Acids Res. 2001 July 1; 29(13): 2795–2801. PMCID: PMC55774 hMYH cell cycle-dependent expression,
subcellular localization and association with replication foci: evidence
suggesting replication-coupled repair of adenine:8-oxoguanine mispairs Istvan Boldogh, Daun Milligan, Myung Soog Lee, Heather Bassett, R. Stephen Lloyd, and Amanda K. McCullough Nucleic Acids Res. 2001 July 1; 29(13): 2802–2809. PMCID: PMC55773 E2F mediates induction of the
Sp1-controlled promoter of the human DNA polymerase B-subunit
gene POLE2Deqi Huang, Maarit Jokela, Jussi Tuusa, Sven Skog, Kari Poikonen, and Juhani E. Syväoja Nucleic Acids Res. 2001 July 1; 29(13): 2810–2821. PMCID: PMC55767 Developmentally-regulated packaging
of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis Ellen L. Shen and Daniel
F. Bogenhagen Nucleic Acids Res. 2001 July 1; 29(13): 2822–2828. PMCID: PMC55765 Measurement of steady-state kinetic
parameters for DNA unwinding by the bacteriophage T4 Dda helicase: use
of peptide nucleic acids to trap single-stranded DNA products of
helicase reactions Bindu Nanduri, Robert
L. Eoff, Alan
J. Tackett, and Kevin
D. Raney Nucleic Acids Res. 2001 July 1; 29(13): 2829–2835. PMCID: PMC55784 14-3-3τ associates
with and activates the MEF2D transcription factor during muscle
cell differentiation So-Jung Choi, So-Youn Park, and Tae-Hee Han Nucleic Acids Res. 2001 July 1; 29(13): 2836–2842. PMCID: PMC55772 The Bloom’s and Werner’s
syndrome proteins are DNA structure-specific helicases Payam Mohaghegh, Julia
K. Karow, Robert
M. Brosh Jr, Vilhelm
A. Bohr, and Ian D. Hickson Nucleic Acids Res. 2001 July 1; 29(13): 2843–2849. PMCID: PMC55766 Genome-wide detection of alternative
splicing in expressed sequences of human genes Barmak Modrek, Alissa Resch, Catherine Grasso, and Christopher Lee Nucleic Acids Res. 2001 July 1; 29(13): 2850–2859. PMCID: PMC55780 Amino acid–base interactions:
a three-dimensional analysis of protein–DNA interactions
at an atomic level Nicholas M. Luscombe, Roman A. Laskowski, and Janet M. Thornton Nucleic Acids Res. 2001 July 1; 29(13): 2860–2874. PMCID: PMC55782 Translesion synthesis by yeast
DNA polymerase ζ from templates containing
lesions of ultraviolet radiation and acetylaminofluorene Dongyu Guo, Xiaohua Wu, Deepak
K. Rajpal, John-Stephen Taylor, and Zhigang Wang Nucleic Acids Res. 2001 July 1; 29(13): 2875–2883. PMCID: PMC55783 SPINE: an integrated tracking
database and data mining approach for identifying feasible targets
in
high-throughput structural proteomics Paul Bertone, Yuval Kluger, Ning Lan, Deyou Zheng, Dinesh Christendat, Adelinda Yee, Aled M. Edwards, Cheryl H. Arrowsmith, Gaetano T. Montelione, and Mark Gerstein Nucleic Acids Res. 2001 July 1; 29(13): 2884–2898. PMCID: PMC55760 DNA repair and sequence context
affect 1O2-induced mutagenesis in bacteria L. F. Agnez-Lima, R.
L. Napolitano, R.
P. P. Fuchs, P.
Di Mascio, A.
R. Muotri, and C. F. M. Menck Nucleic Acids Res. 2001 July 1; 29(13): 2899–2903. PMCID: PMC55764 NAR Methods Online Rapid characterization of DNA
oligomers and genotyping of single nucleotide polymorphism using nucleotide-specific
mass tags Fadi Abdi, E.
Morton Bradbury, Norman Doggett, and Xian Chen Nucleic Acids Res. 2001 July 1; 29(13): e61. PMCID: PMC55785 Exciton interaction in molecular
beacons: a sensitive sensor for short range modifications of the
nucleic acid structure Serena Bernacchi and Yves Mély Nucleic Acids Res. 2001 July 1; 29(13): e62. PMCID: PMC55786 yMGV: a database for visualization
and data mining of published genome-wide yeast expression data Philippe Marc, Frédéric Devaux, and Claude Jacq Nucleic Acids Res. 2001 July 1; 29(13): e63. PMCID: PMC55787 The mapping of nucleosomes and
regulatory protein binding sites at the Saccharomyces
cerevisiae MFA2 gene: a high resolution approach Yumin Teng, Shirong Yu, and Raymond Waters Nucleic Acids Res. 2001 July 1; 29(13): e64. PMCID: PMC55788 Bisulfite genomic sequencing:
systematic investigation of critical experimental parameters C. Grunau, S. J. Clark, and A. Rosenthal Nucleic Acids Res. 2001 July 1; 29(13): e65. PMCID: PMC55789 Reproducible and inexpensive
probe preparation for oligonucleotide arrays Yuzhi Zhang, Brendan
D. Price, Sotirios Tetradis, Subrata Chakrabarti, Gautam Maulik, and G.
Mike Makrigiorgos Nucleic Acids Res. 2001 July 1; 29(13): e66. PMCID: PMC55790 Novel display of knotted DNA
molecules by
two-dimensional gel electrophoresis Sonia Trigueros, Javier Arsuaga, Maria E. Vazquez, De Witt Sumners, and Joaquim Roca Nucleic Acids Res. 2001 July 1; 29(13): e67. PMCID: PMC55791 Quantification of splice variants
using real-time PCR Ina I. Vandenbroucke, Jo Vandesompele, Anne
De Paepe, and Ludwine Messiaen Nucleic Acids Res. 2001 July 1; 29(13): e68. PMCID: PMC55792 Minisequencing on oligonucleotide
microarrays: comparison of immobilisation chemistries Katarina Lindroos, Ulrika Liljedahl, Mirja Raitio, and Ann-Christine Syvänen Nucleic Acids Res. 2001 July 1; 29(13): e69. PMCID: PMC55793 |