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Volume 29(13);  July 1, 2001
Survey and Summary
Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human
Ying Huang and Richard J. Maraia
Nucleic Acids Res. 2001 July 1; 29(13): 2675–2690.
PMCID: PMC55761
Articles
A sensitive, single-tube assay to measure the enzymatic activities of influenza RNA polymerase and other poly(A) polymerases: application to kinetic and inhibitor analysis
Lisa Hooker, Rebecca Strong, Ralph Adams, Balraj Handa, John H. Merrett, Joseph A. Martin, and Klaus Klumpp
Nucleic Acids Res. 2001 July 1; 29(13): 2691–2698.
PMCID: PMC55778
Histone variant macroH2A contains two distinct macrochromatin domains capable of directing macroH2A to the inactive X chromosome
Brian P. Chadwick, Cory M. Valley, and Huntington F. Willard
Nucleic Acids Res. 2001 July 1; 29(13): 2699–2705.
PMCID: PMC55781
Analysis of the open region of RNA polymerase II transcription complexes in the early phase of elongation
Ulrike Fiedler and H. Th. Marc Timmers
Nucleic Acids Res. 2001 July 1; 29(13): 2706–2714.
PMCID: PMC55769
Primer-dependent synthesis by poliovirus RNA-dependent RNA polymerase (3Dpol)
Virgen Rodriguez-Wells, Stephen J. Plotch, and Jeffrey J. DeStefano
Nucleic Acids Res. 2001 July 1; 29(13): 2715–2724.
PMCID: PMC55776
Translesional synthesis on DNA templates containing the 2′-deoxyribonolactone lesion
Nathalie Berthet, Yoann Roupioz, Jean-François Constant, Mitsuharu Kotera, and Jean Lhomme
Nucleic Acids Res. 2001 July 1; 29(13): 2725–2732.
PMCID: PMC55770
Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p
Anthony Henras, Christophe Dez, Jacqueline Noaillac-Depeyre, Yves Henry, and Michèle Caizergues-Ferrer
Nucleic Acids Res. 2001 July 1; 29(13): 2733–2746.
PMCID: PMC55775
Ribosomal protein gene cluster analysis in eubacterium genomics: homology between Sinorhizobium meliloti strain 1021 and Bacillus subtilis
Frédérique Barloy-Hubler, Valérie Lelaure, and Francis Galibert
Nucleic Acids Res. 2001 July 1; 29(13): 2747–2756.
PMCID: PMC55768
Initiation of HIV-2 reverse transcription: a secondary structure model of the RNA–tRNALys3 duplex
Frédéric Freund, Florence Boulmé, Simon Litvak, and Laura Tarrago-Litvak
Nucleic Acids Res. 2001 July 1; 29(13): 2757–2765.
PMCID: PMC55777
In vivo co-localisation of MBNL protein with DMPK expanded-repeat transcripts
Majid Fardaei, Ken Larkin, J. David Brook, and Marion G. Hamshere
Nucleic Acids Res. 2001 July 1; 29(13): 2766–2771.
PMCID: PMC55763
Unusually wide co-factor tolerance in a metalloenzyme; divalent metal ions modulate endo–exonuclease activity in T5 exonuclease
Scott J. Garforth, Dipak Patel, Min Feng, and Jon R. Sayers
Nucleic Acids Res. 2001 July 1; 29(13): 2772–2779.
PMCID: PMC55779
Significantly higher activity of a cytoplasmic hammerhead ribozyme than a corresponding nuclear counterpart: engineered tRNAs with an extended 3′ end can be exported efficiently and specifically to the cytoplasm in mammalian cells
Tomoko Kuwabara, Masaki Warashina, Shiori Koseki, Masayuki Sano, Jun Ohkawa, Kazuhisa Nakayama, and Kazunari Taira
Nucleic Acids Res. 2001 July 1; 29(13): 2780–2788.
PMCID: PMC55762
E2F-1 represses transcription of the human telomerase reverse transcriptase gene
David L. Crowe, Dan C. Nguyen, Kenneth J. Tsang, and Satoru Kyo
Nucleic Acids Res. 2001 July 1; 29(13): 2789–2794.
PMCID: PMC55771
Hexamminecobalt(III)-induced condensation of calf thymus DNA: circular dichroism and hydration measurements
Besik I. Kankia, Vitaly Buckin, and Victor A. Bloomfield
Nucleic Acids Res. 2001 July 1; 29(13): 2795–2801.
PMCID: PMC55774
hMYH cell cycle-dependent expression, subcellular localization and association with replication foci: evidence suggesting replication-coupled repair of adenine:8-oxoguanine mispairs
Istvan Boldogh, Daun Milligan, Myung Soog Lee, Heather Bassett, R. Stephen Lloyd, and Amanda K. McCullough
Nucleic Acids Res. 2001 July 1; 29(13): 2802–2809.
PMCID: PMC55773
E2F mediates induction of the Sp1-controlled promoter of the human DNA polymerase [var epsilon] B-subunit gene POLE2
Deqi Huang, Maarit Jokela, Jussi Tuusa, Sven Skog, Kari Poikonen, and Juhani E. Syväoja
Nucleic Acids Res. 2001 July 1; 29(13): 2810–2821.
PMCID: PMC55767
Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis
Ellen L. Shen and Daniel F. Bogenhagen
Nucleic Acids Res. 2001 July 1; 29(13): 2822–2828.
PMCID: PMC55765
Measurement of steady-state kinetic parameters for DNA unwinding by the bacteriophage T4 Dda helicase: use of peptide nucleic acids to trap single-stranded DNA products of helicase reactions
Bindu Nanduri, Robert L. Eoff, Alan J. Tackett, and Kevin D. Raney
Nucleic Acids Res. 2001 July 1; 29(13): 2829–2835.
PMCID: PMC55784
14-3-3τ associates with and activates the MEF2D transcription factor during muscle cell differentiation
So-Jung Choi, So-Youn Park, and Tae-Hee Han
Nucleic Acids Res. 2001 July 1; 29(13): 2836–2842.
PMCID: PMC55772
The Bloom’s and Werner’s syndrome proteins are DNA structure-specific helicases
Payam Mohaghegh, Julia K. Karow, Robert M. Brosh Jr, Vilhelm A. Bohr, and Ian D. Hickson
Nucleic Acids Res. 2001 July 1; 29(13): 2843–2849.
PMCID: PMC55766
Genome-wide detection of alternative splicing in expressed sequences of human genes
Barmak Modrek, Alissa Resch, Catherine Grasso, and Christopher Lee
Nucleic Acids Res. 2001 July 1; 29(13): 2850–2859.
PMCID: PMC55780
Amino acid–base interactions: a three-dimensional analysis of protein–DNA interactions at an atomic level
Nicholas M. Luscombe, Roman A. Laskowski, and Janet M. Thornton
Nucleic Acids Res. 2001 July 1; 29(13): 2860–2874.
PMCID: PMC55782
Translesion synthesis by yeast DNA polymerase ζ from templates containing lesions of ultraviolet radiation and acetylaminofluorene
Dongyu Guo, Xiaohua Wu, Deepak K. Rajpal, John-Stephen Taylor, and Zhigang Wang
Nucleic Acids Res. 2001 July 1; 29(13): 2875–2883.
PMCID: PMC55783
SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics
Paul Bertone, Yuval Kluger, Ning Lan, Deyou Zheng, Dinesh Christendat, Adelinda Yee, Aled M. Edwards, Cheryl H. Arrowsmith, Gaetano T. Montelione, and Mark Gerstein
Nucleic Acids Res. 2001 July 1; 29(13): 2884–2898.
PMCID: PMC55760
DNA repair and sequence context affect 1O2-induced mutagenesis in bacteria
L. F. Agnez-Lima, R. L. Napolitano, R. P. P. Fuchs, P. Di Mascio, A. R. Muotri, and C. F. M. Menck
Nucleic Acids Res. 2001 July 1; 29(13): 2899–2903.
PMCID: PMC55764
NAR Methods Online
Rapid characterization of DNA oligomers and genotyping of single nucleotide polymorphism using nucleotide-specific mass tags
Fadi Abdi, E. Morton Bradbury, Norman Doggett, and Xian Chen
Nucleic Acids Res. 2001 July 1; 29(13): e61.
PMCID: PMC55785
Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure
Serena Bernacchi and Yves Mély
Nucleic Acids Res. 2001 July 1; 29(13): e62.
PMCID: PMC55786
yMGV: a database for visualization and data mining of published genome-wide yeast expression data
Philippe Marc, Frédéric Devaux, and Claude Jacq
Nucleic Acids Res. 2001 July 1; 29(13): e63.
PMCID: PMC55787
The mapping of nucleosomes and regulatory protein binding sites at the Saccharomyces cerevisiae MFA2 gene: a high resolution approach
Yumin Teng, Shirong Yu, and Raymond Waters
Nucleic Acids Res. 2001 July 1; 29(13): e64.
PMCID: PMC55788
Bisulfite genomic sequencing: systematic investigation of critical experimental parameters
C. Grunau, S. J. Clark, and A. Rosenthal
Nucleic Acids Res. 2001 July 1; 29(13): e65.
PMCID: PMC55789
Reproducible and inexpensive probe preparation for oligonucleotide arrays
Yuzhi Zhang, Brendan D. Price, Sotirios Tetradis, Subrata Chakrabarti, Gautam Maulik, and G. Mike Makrigiorgos
Nucleic Acids Res. 2001 July 1; 29(13): e66.
PMCID: PMC55790
Novel display of knotted DNA molecules by two-dimensional gel electrophoresis
Sonia Trigueros, Javier Arsuaga, Maria E. Vazquez, De Witt Sumners, and Joaquim Roca
Nucleic Acids Res. 2001 July 1; 29(13): e67.
PMCID: PMC55791
Quantification of splice variants using real-time PCR
Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, and Ludwine Messiaen
Nucleic Acids Res. 2001 July 1; 29(13): e68.
PMCID: PMC55792
Minisequencing on oligonucleotide microarrays: comparison of immobilisation chemistries
Katarina Lindroos, Ulrika Liljedahl, Mirja Raitio, and Ann-Christine Syvänen
Nucleic Acids Res. 2001 July 1; 29(13): e69.
PMCID: PMC55793
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