| | Survey and Summary RNA helicases and abiotic stress George W. Owttrim PMCID: PMC1484253 Articles Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme Dayal Saran, Daniel M. Held, and Donald H. Burke PMCID: PMC1484251 PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase Shani Blanga-Kanfi, Michal Amitsur, Abdussalam Azem, and Gabriel Kaufmann PMCID: PMC1484252 Novel oligodeoxynucleotide agonists of TLR9 containing N3-Me-dC or N1-Me-dG modifications Mallikarjuna Reddy Putta, FuGang Zhu, Yukui Li, Lakshmi Bhagat, YanPing Cong, Ekambar R. Kandimalla, and Sudhir Agrawal PMCID: PMC1904100 Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine Anna K. Shchyolkina, Dmitry N. Kaluzhny, Donna J. Arndt-Jovin, Thomas M. Jovin, and Victor B. Zhurkin PMCID: PMC1500870 Structure of human tryptophanyl-tRNA synthetase in complex with tRNATrp reveals the molecular basis of tRNA recognition and specificity Ning Shen, Litao Guo, Bei Yang, Youxin Jin, and Jianping Ding PMCID: PMC1538984 Promiscuous mismatch extension by human DNA polymerase lambda Angel J. Picher, Miguel García-Díaz, Katarzyna Bebenek, Lars C. Pedersen, Thomas A. Kunkel, and Luis Blanco PMCID: PMC1904104 Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism Sergio de la Fuente van Bentem, Dorothea Anrather, Elisabeth Roitinger, Armin Djamei, Thomas Hufnagl, Andrea Barta, Edina Csaszar, Ilse Dohnal, David Lecourieux, and Heribert Hirt PMCID: PMC1904105 Genes invoked in the ovarian transition to menopause Alison Zimon, Anna Erat, Tiffany Von Wald, Brad Bissell, Anna Koulova, Chu H. Choi, Dimcho Bachvarov, Richard H. Reindollar, and Anny Usheva PMCID: PMC1904106 SAP30L interacts with members of the Sin3A corepressor complex and targets Sin3A to the nucleolus K. M. Viiri, H. Korkeamäki, M. K. Kukkonen, L. K. Nieminen, K. Lindfors, P. Peterson, M. Mäki, H. Kainulainen, and O. Lohi PMCID: PMC1500868 Metabolic regulation of ApoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor David M. Lehmann, Chad A. Galloway, Mark P. Sowden, and Harold C. Smith PMCID: PMC1500872 Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits Christophe Dessimoz, Brigitte Boeckmann, Alexander C. J. Roth, and Gaston H. Gonnet PMCID: PMC1500873 Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility Marc van Dijk, Aalt D. J. van Dijk, Victor Hsu, Rolf Boelens, and Alexandre M. J. J. Bonvin PMCID: PMC1500871 Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies Ling Zhang, Olga Rechkoblit, Lihua Wang, Dinshaw J. Patel, Robert Shapiro, and Suse Broyde PMCID: PMC1500869 Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson–Crick terminal base pairs Amanda S. O'Toole, Stacy Miller, Nathan Haines, M. Coleen Zink, and Martin J. Serra PMCID: PMC1500867 Homologous recombination is required for AAV-mediated gene targeting Ana Vasileva, R. Michael Linden, and Rolf Jessberger PMCID: PMC1488886 Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri Prajna R. Kulkarni, Xiaohui Cui, Joshua W. Williams, Ann M. Stevens, and Rahul V. Kulkarni PMCID: PMC1488887 Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison Yang Gao, Lauren K. Wolf, and Rosina M. Georgiadis PMCID: PMC1488884 Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis Yutaka Satou, Makoto Hamaguchi, Keisuke Takeuchi, Kenneth E. M. Hastings, and Nori Satoh PMCID: PMC1488885 Dpb11, the budding yeast homolog of TopBP1, functions with the checkpoint clamp in recombination repair Hideaki Ogiwara, Ayako Ui, Fumitoshi Onoda, Shusuke Tada, Takemi Enomoto, and Masayuki Seki PMCID: PMC1513344 A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC Fiona Innes, Ben Ramsbottom, and Robert J. White PMCID: PMC1488882 Methods Online Primer Extension Enrichment Reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens Lilia Ganova-Raeva, Xinjian Zhang, Fengli Cao, Howard Fields, and Yury Khudyakov PMCID: PMC1484250 Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes Pavel Neuzil, Chunyan Zhang, Juergen Pipper, Sharon Oh, and Lang Zhuo PMCID: PMC1904101 Methylation enrichment pyrosequencing: combining the specificity of MSP with validation by pyrosequencing Richard J. Shaw, Emily K. Akufo-Tetteh, Janet M. Risk, John K. Field, and Triantafillos Liloglou PMCID: PMC1904102 Short, synthetic and selectively 13C-labeled RNA sequences for the NMR structure determination of protein–RNA complexes Philipp Wenter, Luc Reymond, Sigrid D. Auweter, Frédéric H.-T. Allain, and Stefan Pitsch PMCID: PMC1904103 Cytoplasmic expression systems triggered by mRNA yield increased gene expression in post-mitotic neurons Paul J. Farrow, Lee B. Barrett, Mark Stevenson, Kerry D. Fisher, Jonathan Finn, Rachel Spice, Michael A. Allan, Martin Berry, Ann Logan, Leonard W. Seymour, and Martin L. Read PMCID: PMC1500874 Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification Jizu Yi, Wandi Zhang, and David Y. Zhang PMCID: PMC1488881 Rapid and sensitive detection of CpG-methylation using methyl-binding (MB)-PCR Claudia Gebhard, Lucia Schwarzfischer, Thu Hang Pham, Reinhard Andreesen, Andreas Mackensen, and Michael Rehli PMCID: PMC1488883 |
