| | Articles Lawrence Grossman (1924–2006) Stuart Linn PMCID: PMC1368653 RecJ exonuclease: substrates, products and interaction with SSB Eugene S. Han, Deani L. Cooper, Nicole S. Persky, Vincent A. Sutera, Jr, Richard D. Whitaker, Melissa L. Montello, and Susan T. Lovett PMCID: PMC1373692 Role of the silkworm argonaute2 homolog gene in double-strand break repair of extrachromosomal DNA Haruna Tsukioka, Masateru Takahashi, Hiroaki Mon, Kazuhiro Okano, Kazuei Mita, Toru Shimada, Jae Man Lee, Yutaka Kawaguchi, Katsumi Koga, and Takahiro Kusakabe PMCID: PMC1368654 Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs John P. McDonald, Ashley Hall, Didier Gasparutto, Jean Cadet, Jack Ballantyne, and Roger Woodgate PMCID: PMC1373694 Terminal DNA structure and ATP influence binding parameters of the DNA-dependent protein kinase at an early step prior to DNA synapsis Marko Jovanovic and William S. Dynan PMCID: PMC1373693 Differential induction of Leishmania donovani bi-subunit topoisomerase I–DNA cleavage complex by selected flavones and camptothecin: activity of flavones against camptothecin-resistant topoisomerase I Benu Brata Das, Nilkantha Sen, Amit Roy, Somdeb Bose Dasgupta, Agneyo Ganguly, Bikash Chandra Mohanta, Biswanath Dinda, and Hemanta K. Majumder PMCID: PMC1373691 Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands Zehua Chen and Thomas D. Schneider PMCID: PMC1380254 Inhibition of Hsp90 acts synergistically with topoisomerase II poisons to increase the apoptotic killing of cells due to an increase in topoisomerase II mediated DNA damage Catherine R. Barker, Anne V. McNamara, Stephen A. Rackstraw, David E. Nelson, Mike R. White, Alastair J. M. Watson, and John R. Jenkins PMCID: PMC1373695 Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes J. Xu, M. C. Kiel, A. Golshani, J. G. Chosay, H. Aoki, and M. C. Ganoza PMCID: PMC1383619 Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains Manuel Llinás, Zbynek Bozdech, Edith D. Wong, Alex T. Adai, and Joseph L. DeRisi PMCID: PMC1380255 A novel interaction of pokeweed antiviral protein with translation initiation factors 4G and iso4G: a potential indirect mechanism to access viral RNAs M. Wang and K. A. Hudak PMCID: PMC1380256 Accuracy of DNA methylation pattern preservation by the Dnmt1 methyltransferase Rachna Goyal, Richard Reinhardt, and Albert Jeltsch PMCID: PMC1383621 Alkylation of template strand of coding region causes effective gene silencing Ken-ichi Shinohara, Shunta Sasaki, Masafumi Minoshima, Toshikazu Bando, and Hiroshi Sugiyama PMCID: PMC1383623 Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay Evan A. Farkash, Gary D. Kao, Shane R. Horman, and Eline T. Luning Prak PMCID: PMC1385994 The gene encoding the fragile X RNA-binding protein is controlled by nuclear respiratory factor 2 and the CREB family of transcription factors Karen T. Smith, Robert D. Nicholls, and Daniel Reines PMCID: PMC1383620 Krüppel-like factor 5 is an important mediator for lipopolysaccharide-induced proinflammatory response in intestinal epithelial cells Sengthong Chanchevalap, Mandayam O. Nandan, Beth B. McConnell, Laetitia Charrier, Didier Merlin, Jonathan P. Katz, and Vincent W. Yang PMCID: PMC1383625 Post-transcriptional regulation of thioredoxin by the stress inducible heterogenous ribonucleoprotein A18 Ruiqing Yang, David J. Weber, and France Carrier PMCID: PMC1388095 RNA-binding of the human cytomegalovirus transactivator protein UL69, mediated by arginine-rich motifs, is not required for nuclear export of unspliced RNA Zsolt Toth, Peter Lischka, and Thomas Stamminger PMCID: PMC1383624 Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and −1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants Xiaoxing Wang, Sek-Man Wong, and D. X. Liu PMCID: PMC1383626 A data-driven clustering method for time course gene expression data Ping Ma, Cristian I. Castillo-Davis, Wenxuan Zhong, and Jun S. Liu PMCID: PMC1388097 Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method Michał Łęgiewicz, Agnieszka Wichłacz, Bartosz Brzezicha, and Jerzy Ciesiołka PMCID: PMC1388270 Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thaliana Melanie Cole, Carolin Nolte, and Wolfgang Werr PMCID: PMC1388269 The hepatitis C virus 3′-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase Shelton S. Bradrick, Robert W. Walters, and Matthias Gromeier PMCID: PMC1388098 Methods Online Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans Emma Meaburn, Lee M. Butcher, Leonard C. Schalkwyk, and Robert Plomin PMCID: PMC1368655 Nucleic acid visualization with UCSF Chimera Gregory S. Couch, Donna K. Hendrix, and Thomas E. Ferrin PMCID: PMC1368656 RAISE: a simple and novel method of generating random insertion and deletion mutations Ryota Fujii, Motomitsu Kitaoka, and Kiyoshi Hayashi PMCID: PMC1380258 New softwares for automated microsatellite marker development Wellington Martins, Daniel de Sousa, Karina Proite, Patrícia Guimarães, Marcio Moretzsohn, and David Bertioli PMCID: PMC1380257 Controlled loading of oligodeoxyribonucleotide monolayers onto unoxidized crystalline silicon; fluorescence-based determination of the surface coverage and of the hybridization efficiency; parallel imaging of the process by Atomic Force Microscopy Fabrizio Cattaruzza, Antonio Cricenti, Alberto Flamini, Marco Girasole, Giovanni Longo, Tommaso Prosperi, Giuseppina Andreano, Luciano Cellai, and Emanuele Chirivino PMCID: PMC1385995 The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation Folkert J. van Werven and H. Th. Marc Timmers PMCID: PMC1383622 A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes Matthew E. Pipkin and Mathias G. Lichtenheld PMCID: PMC1388096 |
